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grant_code:"AI076331"

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Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Protein [6]
  • Virus [6]
  • Complex [3]
  • Ligand [2]

Organism

  • Zika virus [3]
  • Homo sapiens [3]
  • Usutu virus [2]
  • Escherichia phage phix174 [1]
  • Zika virus [1]

EM Method

  • Single-particle [6]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [1]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • > 10 MDa [6]

Release Date

  • 2021 [2]
  • 2020 [1]
  • 2019 [2]
  • 2018 [1]
  • 2017 [1]

Author by name

  • Rossmann MG [7]
  • Klose T [6]
  • Kuhn RJ [6]
  • Long F [4]
  • Khare B [3]
  • Miller AS [3]
  • Sevvana M [3]
  • Buda G [2]
  • Diamond MS [2]
  • Fang Q [2]
  • Fernandez E [2]
  • Fokine A [2]
  • Beutler N [1]
  • Bryan A [1]
  • Burton DR [1]
  • Crowe JE [1]
  • Crowe Jr Je [1]
  • Davidson E [1]
  • Doranz BJ [1]
  • Doyle M [1]
  • Hasan SS [1]
  • Jiang W [1]
  • Lai YC [1]
  • Miller A [1]
  • Parren M [1]
  • Porta JC [1]
  • Rogers TF [1]
  • Sapparapu G [1]
  • Sun L [1]
  • Sun Y [1]
  • Walker LM [1]

Author by ORCID

  • Klose T [6]
  • Khare B [3]
  • Kuhn RJ [3]
  • Sevvana M [3]
  • Fang Q [2]
  • Crowe JE [1]
  • Crowe Jr Je [1]
  • Jiang W [1]
  • Lai YC [1]
  • Parren M [1]
  • Beutler N [1]

Journal

  • PNAS [3]
  • J STRUCT BIOL [1]
  • NAT COMMUN [1]
  • SCIENCE [1]
  • STRUCTURE [1]
  • VIRUSES [1]

Software

  • JSPR [6]
  • RELION [5]
  • IMOD [1]

Microscope

  • FEI TITAN KRIOS [7]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [5]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]

External links

  • PDB [7]
  • UniProt [6]
  • AlphaFold DB [3]
  • CATH [2]
  • ChEBI [2]
  • ChEMBL [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [1]
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Showing 1 - 7 of 7. Page 1 of 1
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EMD-23272
Download Map
3D View
The mature Usutu SAAR-1776, Map A
CryoEM
Release date: Sept. 1, 2021
Resolution: 2.42 Å
EM Method: Single-particle
Fitted PDBs: 7lcg
Q-score: 0.558
Similar entry percentile: 48%

Khare B, Klose T, Fang Q, Rossmann MG, Kuhn RJ

PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2107408118 Pubmed: 34417300 ]

EMD-23273
Download Map
3D View
The mature Usutu SAAR-1776, Map B
CryoEM
Release date: Sept. 1, 2021
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 7lch
Q-score: 0.631
Similar entry percentile: 79%

Khare B, Klose T, Fang Q, Rossmann MG, Kuhn RJ

PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2107408118 Pubmed: 34417300 ]

EMD-22818
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3D View
Cryo-EM structure of Zika virus in complex with E protein cross-linking human monoclonal antibody ADI30056
CryoEM
Release date: Dec. 16, 2020
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7kcr
Q-score: 0.436
Similar entry percentile: 79%

Sevvana M, Rogers TF, Miller AS, Long F, Klose T, Beutler N, Lai YC, Parren M, Walker LM, Buda G, Burton DR, Rossmann MG, Kuhn RJ

Viruses (2020) 12 [ DOI: doi:10.3390/v12121346 Pubmed: 33255202 ]

EMD-9040
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3D View
Analysis of bacteriophage phiX174 tomograms using the locked self-rotation function
CryoEM
Release date: Feb. 27, 2019
EM Method: Tomography

Fokine A, Khare B, Sun Y, Rossmann MG

J Struct Biol (2019) 205 pp. 53-58 [ DOI: doi:10.1016/j.jsb.2019.01.006 Pubmed: 30742896 ]

EMD-9131
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3D View
Cryo-EM structure of the ZIKV virion in complex with Fab fragments of the potently neutralizing human monoclonal antibody ZIKV-195
CryoEM
Release date: Jan. 16, 2019
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6mid
Q-score: 0.451
Similar entry percentile: 85%

Long F, Doyle M, Fernandez E, Miller AS, Klose T, Sevvana M, Bryan A, Davidson E, Doranz BJ, Kuhn RJ, Diamond MS, Crowe Jr JE, Rossmann MG

PNAS (2019) 116 pp. 1591-1596 [ Pubmed: 30642974 DOI: doi:10.1073/pnas.1815432116 ]

EMD-7543
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Structure of Zika virus at a resolution of 3.1 Angstrom
CryoEM
Release date: July 4, 2018
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6co8
Q-score: 0.507
Similar entry percentile: 62%

Sevvana M, Long F, Miller AS, Klose T, Buda G, Sun L, Kuhn RJ, Rossmann MG

Structure (2018) 26 pp. 1169- [ Pubmed: 29958768 DOI: doi:10.1016/j.str.2018.05.006 ]

EMD-8548
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A Human Antibody Against Zika Virus Crosslinks the E Protein to Prevent Infection
CryoEM
Release date: March 29, 2017
Resolution: 6.2 Å
EM Method: Single-particle
Fitted PDBs: 5uhy
Q-score: 0.148
Similar entry percentile: 33%

Hasan SS, Miller A, Sapparapu G, Fernandez E, Klose T, Long F, Fokine A, Porta JC, Jiang W, Diamond MS, Crowe JE, Kuhn RJ, Rossmann MG

Nat Commun (2017) 8 pp. 14722-14722 [ Pubmed: 28300075 DOI: doi:10.1038/ncomms14722 ]

Sort by: Download
Showing 1 - 7 of 7. Page 1 of 1
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Protein [6]
  • Virus [6]
  • Complex [3]
  • Ligand [2]

Organism

  • Zika virus [3]
  • Homo sapiens [3]
  • Usutu virus [2]
  • Escherichia phage phix174 [1]
  • Zika virus [1]

EM Method

  • Single-particle [6]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [1]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • > 10 MDa [6]

Release Date

  • 2021 [2]
  • 2020 [1]
  • 2019 [2]
  • 2018 [1]
  • 2017 [1]

Author by name

  • Rossmann MG [7]
  • Klose T [6]
  • Kuhn RJ [6]
  • Long F [4]
  • Khare B [3]
  • Miller AS [3]
  • Sevvana M [3]
  • Buda G [2]
  • Diamond MS [2]
  • Fang Q [2]
  • Fernandez E [2]
  • Fokine A [2]
  • Beutler N [1]
  • Bryan A [1]
  • Burton DR [1]
  • Crowe JE [1]
  • Crowe Jr Je [1]
  • Davidson E [1]
  • Doranz BJ [1]
  • Doyle M [1]
  • Hasan SS [1]
  • Jiang W [1]
  • Lai YC [1]
  • Miller A [1]
  • Parren M [1]
  • Porta JC [1]
  • Rogers TF [1]
  • Sapparapu G [1]
  • Sun L [1]
  • Sun Y [1]
  • Walker LM [1]

Author by ORCID

  • Klose T [6]
  • Khare B [3]
  • Kuhn RJ [3]
  • Sevvana M [3]
  • Fang Q [2]
  • Crowe JE [1]
  • Crowe Jr Je [1]
  • Jiang W [1]
  • Lai YC [1]
  • Parren M [1]
  • Beutler N [1]

Journal

  • PNAS [3]
  • J STRUCT BIOL [1]
  • NAT COMMUN [1]
  • SCIENCE [1]
  • STRUCTURE [1]
  • VIRUSES [1]

Software

  • JSPR [6]
  • RELION [5]
  • IMOD [1]

Microscope

  • FEI TITAN KRIOS [7]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [5]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]

External links

  • PDB [7]
  • UniProt [6]
  • AlphaFold DB [3]
  • CATH [2]
  • ChEBI [2]
  • ChEMBL [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [1]