Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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Current Database

  • EMDB [53]

Current status

  • REL [53]

Sample type

  • Complex [53]
  • Protein [44]
  • Ligand [24]

Organism

  • Homo sapiens [53]
  • Severe acute respiratory syndrome coronavirus [33]

EM Method

  • Single-particle [53]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [27]
  • ≥ 4Å and < 5Å [8]
  • ≥ 6Å and < 8Å [10]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [1]
  • 100-250 kDa [13]
  • 250-500 kDa [5]
  • 500-1000 kDa [19]
  • 1-2 MDa [5]

Release Date

  • 2024 [15]
  • 2023 [23]
  • 2022 [14]
  • 2021 [1]

Author by name

  • Sun L [51]
  • Wang Y [43]
  • Zhang X [39]
  • Mao Q [37]
  • Chen Z [36]
  • Zhan W [34]
  • Hao A [27]
  • Liu Q [27]
  • Han L [23]
  • Zhang Z [22]
  • Beutler B [20]
  • Hu Y [20]
  • Moresco EMY [20]
  • Peng C [20]
  • Xun Y [20]
  • Yin Y [20]
  • Li C [18]
  • Chen ZG [17]
  • Wang P [15]
  • Wang X [15]
  • Zhan WQ [15]
  • Zhang M [13]
  • Ma Y [12]
  • Cai G [11]
  • Cao J [11]
  • Cao Z [11]
  • Chen Y [11]
  • Chu H [11]
  • Cui Y [11]
  • Cun Y [11]
  • Geng W [11]
  • Hu Z [11]
  • Huang J [11]
  • Huang X [11]
  • Li J [11]
  • Li M [11]
  • Luo C [11]
  • Mao T [11]
  • Qiao R [11]
  • Qiu T [11]
  • Wang C [11]
  • Wen Y [11]
  • Yoon C [11]
  • Zhang W [11]
  • Zhao C [11]
  • Zhao X [11]
  • Wu F [10]
  • Zhao J [10]
  • Ji P [7]
  • Liu M [7]
  • Lu L [7]
  • Song W [7]
  • Sun T [7]
  • Tu C [7]
  • Wu Y [7]
  • Ying T [7]
  • Zheng Q [7]
  • Zhu T [7]
  • Hao AH [4]
  • Jiang S [4]
  • Xie Y [4]
  • Deng Q [3]
  • Du S [3]
  • Gu X [3]
  • Hu G [3]
  • Huang K [3]
  • Kong Y [3]
  • Liu J [3]
  • Song Y [3]
  • Yang Z [3]
  • Zhang Y [3]
  • Zhu Y [3]
  • Chen R [1]
  • Fan K [1]
  • Fu W [1]
  • Gao Y [1]
  • Jiang Q [1]
  • Li Y [1]
  • Liu Z [1]
  • Mayer CT [1]
  • Schoofs T [1]
  • Wang K [1]
  • Wang Q [1]
  • Wu J [1]
  • Wu W [1]
  • Xu W [1]
  • Yuan Z [1]
  • Zhang Q [1]
  • Zhou J [1]
  • Zhou Y [1]

Author by ORCID

  • Sun L [38]
  • Chen Z [23]
  • Zhang Z [20]
  • Moresco EMY [20]
  • Beutler B [20]
  • Peng C [20]
  • Yin Y [20]
  • Wang P [15]
  • Huang X [11]
  • Zhao X [11]
  • Huang J [11]
  • Chu H [11]
  • Zhao J [10]
  • Wu F [10]
  • Lu L [7]
  • Wang Y [7]
  • Mao Q [6]
  • Ying T [4]
  • Zhang M [3]
  • Yang Z [3]
  • Hao A [3]
  • Wang Q [1]
  • Fan K [1]
  • Fu W [1]
  • Jiang Q [1]
  • Jiang S [1]
  • Zhang X [1]
  • Gao Y [1]
  • Mayer CT [1]
  • Zhou Y [1]
  • Wu W [1]
  • Schoofs T [1]
  • Wang Q [1]
  • Chen R [1]
  • Liu Z [1]
  • Wang K [1]
  • Yuan Z [1]
  • Zhang Q [1]
  • Xu W [1]
  • Zhou J [1]

Journal

  • NAT STRUCT MOL BIOL [20]
  • CELL DISCOV [18]
  • SIGNAL TRANSDUCT TARGET THER [4]
  • TO BE PUBLISHED [4]
  • CELL [3]
  • CELL RES [3]
  • PROTEIN CELL [1]

Software

  • RELION [20]

Microscope

  • FEI TITAN KRIOS [53]

Electron Source

  • FIELD EMISSION GUN [53]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [20]
  • FEI FALCON IV 4K X 4K [18]
  • GATAN K3 BIOQUANTUM 6K X 4K [13]
  • GATAN K2 QUANTUM 4K X 4K [2]

External links

  • Complex Portal [44]
  • InterPro [44]
  • PDB [44]
  • PDBe-Kb [44]
  • Pfam [44]
  • UniProt [44]
  • Gene Ontology [41]
  • ChEBI [24]
  • ChEMBL [24]
  • AlphaFold DB [18]
  • DrugBank [11]
Sort by: Download
Showing 1 - 10 of 53. Page 1 of 6
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EMD-37157
Download Map
3D View
State 2 of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5
Release date: Sept. 4, 2024
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8keh

Zhao X, Qiu T, Huang X, Mao Q, Wang Y, Qiao R, Li J, Mao T, Wang Y, Cun Y, Wang C, Luo C, Yoon C, Wang X, Li C, Cui Y, Zhao C, Li M, Chen Y, Cai G, Geng W, Hu Z, Cao J, Zhang W, Cao Z, Chu H, Sun L, Wang P

Cell Discov (2024) 10 pp. 14-14 [ Pubmed: 38320990 DOI: doi:10.1038/s41421-024-00648-1 ]

EMD-37139
Download Map
3D View
Structure of SARS-CoV Spike protein complexed with antibody PW5-5
Release date: Aug. 14, 2024
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8kdm

Zhao X, Qiu T, Huang X, Mao Q, Wang Y, Qiao R, Li J, Mao T, Wang Y, Cun Y, Wang C, Luo C, Yoon C, Wang X, Li C, Cui Y, Zhao C, Li M, Chen Y, Cai G, Geng W, Hu Z, Cao J, Zhang W, Cao Z, Chu H, Sun L, Wang P

Cell Discov (2024) 10 pp. 14-14 [ Pubmed: 38320990 DOI: doi:10.1038/s41421-024-00648-1 ]

EMD-37143
Download Map
3D View
The local refined map of SARS-CoV-2 XBB Variant Spike protein complexed with antibody PW5-535
Release date: Aug. 14, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8kdr

Zhao X, Qiu T, Huang X, Mao Q, Wang Y, Qiao R, Li J, Mao T, Wang Y, Cun Y, Wang C, Luo C, Yoon C, Wang X, Li C, Cui Y, Zhao C, Li M, Chen Y, Cai G, Geng W, Hu Z, Cao J, Zhang W, Cao Z, Chu H, Sun L, Wang P

Cell Discov (2024) 10 pp. 14-14 [ Pubmed: 38320990 DOI: doi:10.1038/s41421-024-00648-1 ]

EMD-37144
Download Map
3D View
Trimer state of SARS-CoV Spike protein complexed with antibody PW5-535
Release date: Aug. 14, 2024
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 8kds

Zhao X, Qiu T, Huang X, Mao Q, Wang Y, Qiao R, Li J, Mao T, Wang Y, Cun Y, Wang C, Luo C, Yoon C, Wang X, Li C, Cui Y, Zhao C, Li M, Chen Y, Cai G, Geng W, Hu Z, Cao J, Zhang W, Cao Z, Chu H, Sun L, Wang P

Cell Discov (2024) 10 pp. 14-14 [ Pubmed: 38320990 DOI: doi:10.1038/s41421-024-00648-1 ]

EMD-37145
Download Map
3D View
The local refined map of SARS-CoV Spike protein complexed with antibody PW5-5
Release date: Aug. 14, 2024
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8kdt

Zhao X, Qiu T, Huang X, Mao Q, Wang Y, Qiao R, Li J, Mao T, Wang Y, Cun Y, Wang C, Luo C, Yoon C, Wang X, Li C, Cui Y, Zhao C, Li M, Chen Y, Cai G, Geng W, Hu Z, Cao J, Zhang W, Cao Z, Chu H, Sun L, Wang P

Cell Discov (2024) 10 pp. 14-14 [ Pubmed: 38320990 DOI: doi:10.1038/s41421-024-00648-1 ]

EMD-37160
Download Map
3D View
Monomer state of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5
Release date: Aug. 14, 2024
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 8kej

Zhao X, Qiu T, Huang X, Mao Q, Wang Y, Qiao R, Li J, Mao T, Wang Y, Cun Y, Wang C, Luo C, Yoon C, Wang X, Li C, Cui Y, Zhao C, Li M, Chen Y, Cai G, Geng W, Hu Z, Cao J, Zhang W, Cao Z, Chu H, Sun L, Wang P

Cell Discov (2024) 10 pp. 14-14 [ Pubmed: 38320990 DOI: doi:10.1038/s41421-024-00648-1 ]

EMD-37161
Download Map
3D View
Monomer state of SARS-CoV Spike protein complexed with antibody PW5-535
Release date: Aug. 14, 2024
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 8kek

Zhao X, Qiu T, Huang X, Mao Q, Wang Y, Qiao R, Li J, Mao T, Wang Y, Cun Y, Wang C, Luo C, Yoon C, Wang X, Li C, Cui Y, Zhao C, Li M, Chen Y, Cai G, Geng W, Hu Z, Cao J, Zhang W, Cao Z, Chu H, Sun L, Wang P

Cell Discov (2024) 10 pp. 14-14 [ Pubmed: 38320990 DOI: doi:10.1038/s41421-024-00648-1 ]

EMD-37162
Download Map
3D View
Structure of SARS-CoV-2 Omicron BA.1 Spike complexed with antibody PW5-570
Release date: Aug. 14, 2024
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8keo

Zhao X, Qiu T, Huang X, Mao Q, Wang Y, Qiao R, Li J, Mao T, Wang Y, Cun Y, Wang C, Luo C, Yoon C, Wang X, Li C, Cui Y, Zhao C, Li M, Chen Y, Cai G, Geng W, Hu Z, Cao J, Zhang W, Cao Z, Chu H, Sun L, Wang P

Cell Discov (2024) 10 pp. 14-14 [ Pubmed: 38320990 DOI: doi:10.1038/s41421-024-00648-1 ]

EMD-37163
Download Map
3D View
The local refined map of SARS-CoV-2 Omicron BA.1 Spike complexed with antibody PW5-570
Release date: Aug. 14, 2024
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8kep

Zhao X, Qiu T, Huang X, Mao Q, Wang Y, Qiao R, Li J, Mao T, Wang Y, Cun Y, Wang C, Luo C, Yoon C, Wang X, Li C, Cui Y, Zhao C, Li M, Chen Y, Cai G, Geng W, Hu Z, Cao J, Zhang W, Cao Z, Chu H, Sun L, Wang P

Cell Discov (2024) 10 pp. 14-14 [ Pubmed: 38320990 DOI: doi:10.1038/s41421-024-00648-1 ]

EMD-37164
Download Map
3D View
State 1 of SARS-CoV-2 XBB Variant Spike protein trimer complexed with antibody PW5-5
Release date: Aug. 14, 2024
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8keq

Zhao X, Qiu T, Huang X, Mao Q, Wang Y, Qiao R, Li J, Mao T, Wang Y, Cun Y, Wang C, Luo C, Yoon C, Wang X, Li C, Cui Y, Zhao C, Li M, Chen Y, Cai G, Geng W, Hu Z, Cao J, Zhang W, Cao Z, Chu H, Sun L, Wang P

Cell Discov (2024) 10 pp. 14-14 [ Pubmed: 38320990 DOI: doi:10.1038/s41421-024-00648-1 ]

Sort by: Download
Showing 1 - 10 of 53. Page 1 of 6
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [53]

Current status

  • REL [53]

Sample type

  • Complex [53]
  • Protein [44]
  • Ligand [24]

Organism

  • Homo sapiens [53]
  • Severe acute respiratory syndrome coronavirus [33]

EM Method

  • Single-particle [53]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [27]
  • ≥ 4Å and < 5Å [8]
  • ≥ 6Å and < 8Å [10]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [1]
  • 100-250 kDa [13]
  • 250-500 kDa [5]
  • 500-1000 kDa [19]
  • 1-2 MDa [5]

Release Date

  • 2024 [15]
  • 2023 [23]
  • 2022 [14]
  • 2021 [1]

Author by name

  • Sun L [51]
  • Wang Y [43]
  • Zhang X [39]
  • Mao Q [37]
  • Chen Z [36]
  • Zhan W [34]
  • Hao A [27]
  • Liu Q [27]
  • Han L [23]
  • Zhang Z [22]
  • Beutler B [20]
  • Hu Y [20]
  • Moresco EMY [20]
  • Peng C [20]
  • Xun Y [20]
  • Yin Y [20]
  • Li C [18]
  • Chen ZG [17]
  • Wang P [15]
  • Wang X [15]
  • Zhan WQ [15]
  • Zhang M [13]
  • Ma Y [12]
  • Cai G [11]
  • Cao J [11]
  • Cao Z [11]
  • Chen Y [11]
  • Chu H [11]
  • Cui Y [11]
  • Cun Y [11]
  • Geng W [11]
  • Hu Z [11]
  • Huang J [11]
  • Huang X [11]
  • Li J [11]
  • Li M [11]
  • Luo C [11]
  • Mao T [11]
  • Qiao R [11]
  • Qiu T [11]
  • Wang C [11]
  • Wen Y [11]
  • Yoon C [11]
  • Zhang W [11]
  • Zhao C [11]
  • Zhao X [11]
  • Wu F [10]
  • Zhao J [10]
  • Ji P [7]
  • Liu M [7]
  • Lu L [7]
  • Song W [7]
  • Sun T [7]
  • Tu C [7]
  • Wu Y [7]
  • Ying T [7]
  • Zheng Q [7]
  • Zhu T [7]
  • Hao AH [4]
  • Jiang S [4]
  • Xie Y [4]
  • Deng Q [3]
  • Du S [3]
  • Gu X [3]
  • Hu G [3]
  • Huang K [3]
  • Kong Y [3]
  • Liu J [3]
  • Song Y [3]
  • Yang Z [3]
  • Zhang Y [3]
  • Zhu Y [3]
  • Chen R [1]
  • Fan K [1]
  • Fu W [1]
  • Gao Y [1]
  • Jiang Q [1]
  • Li Y [1]
  • Liu Z [1]
  • Mayer CT [1]
  • Schoofs T [1]
  • Wang K [1]
  • Wang Q [1]
  • Wu J [1]
  • Wu W [1]
  • Xu W [1]
  • Yuan Z [1]
  • Zhang Q [1]
  • Zhou J [1]
  • Zhou Y [1]

Author by ORCID

  • Sun L [38]
  • Chen Z [23]
  • Zhang Z [20]
  • Moresco EMY [20]
  • Beutler B [20]
  • Peng C [20]
  • Yin Y [20]
  • Wang P [15]
  • Huang X [11]
  • Zhao X [11]
  • Huang J [11]
  • Chu H [11]
  • Zhao J [10]
  • Wu F [10]
  • Lu L [7]
  • Wang Y [7]
  • Mao Q [6]
  • Ying T [4]
  • Zhang M [3]
  • Yang Z [3]
  • Hao A [3]
  • Wang Q [1]
  • Fan K [1]
  • Fu W [1]
  • Jiang Q [1]
  • Jiang S [1]
  • Zhang X [1]
  • Gao Y [1]
  • Mayer CT [1]
  • Zhou Y [1]
  • Wu W [1]
  • Schoofs T [1]
  • Wang Q [1]
  • Chen R [1]
  • Liu Z [1]
  • Wang K [1]
  • Yuan Z [1]
  • Zhang Q [1]
  • Xu W [1]
  • Zhou J [1]

Journal

  • NAT STRUCT MOL BIOL [20]
  • CELL DISCOV [18]
  • SIGNAL TRANSDUCT TARGET THER [4]
  • TO BE PUBLISHED [4]
  • CELL [3]
  • CELL RES [3]
  • PROTEIN CELL [1]

Software

  • RELION [20]

Microscope

  • FEI TITAN KRIOS [53]

Electron Source

  • FIELD EMISSION GUN [53]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [20]
  • FEI FALCON IV 4K X 4K [18]
  • GATAN K3 BIOQUANTUM 6K X 4K [13]
  • GATAN K2 QUANTUM 4K X 4K [2]

External links

  • Complex Portal [44]
  • InterPro [44]
  • PDB [44]
  • PDBe-Kb [44]
  • Pfam [44]
  • UniProt [44]
  • Gene Ontology [41]
  • ChEBI [24]
  • ChEMBL [24]
  • AlphaFold DB [18]
  • DrugBank [11]