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grant_code:"21H05281"

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Current Database

  • EMDB [4]

Current status

  • REL [4]

Sample type

  • Complex [4]
  • DNA [4]
  • Ligand [4]
  • Protein [4]
  • RNA [4]

Organism

  • Escherichia coli [4]

EM Method

  • Single-particle [4]

Resolution

  • ≥ 2Å and < 3Å [4]

Model molecular weight

  • 250-500 kDa [3]
  • 500-1000 kDa [1]

Release Date

  • 2025 [4]

Author by name

  • Azam AH [4]
  • Chihara K [4]
  • Hiraizumi M [4]
  • Ishikawa J [4]
  • Kiga K [4]
  • Mitsuda Y [4]
  • Nagao A [4]
  • Nakazaki R [4]
  • Nishimasu H [4]
  • Suzuki T [4]
  • Yamashita K [4]
  • Yoneyama K [4]

Author by ORCID

  • Kiga K [4]
  • Nishimasu H [4]
  • Chihara K [4]
  • Hiraizumi M [4]
  • Yamashita K [4]
  • Suzuki T [4]
  • Ishikawa J [4]
  • Yoneyama K [4]

Journal

  • NAT COMMUN [4]

Software

  • CRYOSPARC [4]

Microscope

  • TFS KRIOS [4]

Electron Source

  • FIELD EMISSION GUN [4]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [4]

External links

  • AlphaFold DB [4]
  • ChEBI [4]
  • ChEMBL [4]
  • DrugBank [4]
  • PDB [4]
  • UniProt [4]
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Showing 1 - 4 of 4. Page 1 of 1
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EMD-62378
Download Map
3D View
Cryo-EM structure of the Retron-Eco7 complex state 1
Release date: Nov. 12, 2025
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 9kjx
Q-score: 0.561

Ishikawa J, Yoneyama K, Azam AH, Nagao A, Mitsuda Y, Nakazaki R, Chihara K, Hiraizumi M, Yamashita K, Suzuki T, Kiga K, Nishimasu H

Nat Commun (2025) 16 pp. 10821-10821 [ DOI: doi:10.1038/s41467-025-66589-9 Pubmed: 41330933 ]

EMD-62380
Download Map
3D View
Cryo-EM structure of the Retron-Eco7 complex state 3
Release date: Nov. 12, 2025
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9kjz
Q-score: 0.562

Ishikawa J, Yoneyama K, Azam AH, Nagao A, Mitsuda Y, Nakazaki R, Chihara K, Hiraizumi M, Yamashita K, Suzuki T, Kiga K, Nishimasu H

Nat Commun (2025) 16 pp. 10821-10821 [ DOI: doi:10.1038/s41467-025-66589-9 Pubmed: 41330933 ]

EMD-62381
Download Map
3D View
Cryo-EM structure of the Retron-Eco7 complex state 4
Release date: Nov. 12, 2025
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 9kk1
Q-score: 0.557

Ishikawa J, Yoneyama K, Azam AH, Nagao A, Mitsuda Y, Nakazaki R, Chihara K, Hiraizumi M, Yamashita K, Suzuki T, Kiga K, Nishimasu H

Nat Commun (2025) 16 pp. 10821-10821 [ DOI: doi:10.1038/s41467-025-66589-9 Pubmed: 41330933 ]

EMD-62382
Download Map
3D View
Cryo-EM structure of the Retron-Eco7 complex state 5
Release date: Nov. 12, 2025
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 9kk2
Q-score: 0.576

Ishikawa J, Yoneyama K, Azam AH, Nagao A, Mitsuda Y, Nakazaki R, Chihara K, Hiraizumi M, Yamashita K, Suzuki T, Kiga K, Nishimasu H

Nat Commun (2025) 16 pp. 10821-10821 [ DOI: doi:10.1038/s41467-025-66589-9 Pubmed: 41330933 ]

Sort by: Download
Showing 1 - 4 of 4. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [4]

Current status

  • REL [4]

Sample type

  • Complex [4]
  • DNA [4]
  • Ligand [4]
  • Protein [4]
  • RNA [4]

Organism

  • Escherichia coli [4]

EM Method

  • Single-particle [4]

Resolution

  • ≥ 2Å and < 3Å [4]

Model molecular weight

  • 250-500 kDa [3]
  • 500-1000 kDa [1]

Release Date

  • 2025 [4]

Author by name

  • Azam AH [4]
  • Chihara K [4]
  • Hiraizumi M [4]
  • Ishikawa J [4]
  • Kiga K [4]
  • Mitsuda Y [4]
  • Nagao A [4]
  • Nakazaki R [4]
  • Nishimasu H [4]
  • Suzuki T [4]
  • Yamashita K [4]
  • Yoneyama K [4]

Author by ORCID

  • Kiga K [4]
  • Nishimasu H [4]
  • Chihara K [4]
  • Hiraizumi M [4]
  • Yamashita K [4]
  • Suzuki T [4]
  • Ishikawa J [4]
  • Yoneyama K [4]

Journal

  • NAT COMMUN [4]

Software

  • CRYOSPARC [4]

Microscope

  • TFS KRIOS [4]

Electron Source

  • FIELD EMISSION GUN [4]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [4]

External links

  • AlphaFold DB [4]
  • ChEBI [4]
  • ChEMBL [4]
  • DrugBank [4]
  • PDB [4]
  • UniProt [4]