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grant_code:"21H05142"

Filter By

Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Complex [7]
  • Protein [7]
  • Ligand [6]

Organism

  • Hyphochytrium catenoides [3]
  • Rhodomonas lens [2]
  • Homo sapiens [2]
  • Mus musculus [1]

EM Method

  • Single-particle [7]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [2]

Model molecular weight

  • 0-50 kDa [1]
  • 100-250 kDa [5]

Release Date

  • 2025 [2]
  • 2023 [3]
  • 2022 [2]

Author by name

  • Dror RO [7]
  • Fukuda M [7]
  • Kato HE [7]
  • Matsui TE [7]
  • Yamashita K [7]
  • Byrne EFX [5]
  • Deisseroth K [5]
  • Ikeda H [5]
  • Inoue K [5]
  • Inoue M [5]
  • Kim S [5]
  • Kim Y [5]
  • Kim YS [5]
  • Kishi KE [5]
  • Konno M [5]
  • Nagata T [5]
  • Paggi JM [5]
  • Ramakrishnan C [5]
  • Wang PY [5]
  • Jo Y [3]
  • Kandori H [3]
  • Katayama K [3]
  • Kim J [3]
  • Nakamura S [3]
  • Sugiura M [3]
  • Tajima S [3]
  • Takaramoto S [3]
  • Benster T [2]
  • Fukunaga A [2]
  • Inoue A [2]
  • Inoue W [2]
  • Inoue WJ [2]
  • Ishikita H [2]
  • Iwata S [2]
  • Kawakami K [2]
  • Kise R [2]
  • Kobayashi K [2]
  • Kojima A [2]
  • Koyanagi J [2]
  • Kugawa M [2]
  • Kusakizako T [2]
  • Liu K [2]
  • Lo M [2]
  • Nomura N [2]
  • Nureki O [2]
  • Quirin S [2]
  • Saito K [2]
  • Shibata M [2]
  • Suomivuori CM [2]
  • Thadhani E [2]
  • Tsujimura M [2]
  • Uemura T [2]

Author by ORCID

  • Kato HE [7]
  • Yamashita K [7]
  • Dror RO [7]
  • Wang PY [5]
  • Fukuda M [4]
  • Tajima S [3]
  • Jo Y [3]
  • Takaramoto S [3]
  • Shibata M [2]
  • Nagata T [2]
  • Byrne EFX [2]
  • Saito K [2]
  • Suomivuori CM [2]
  • Kawakami K [2]
  • Kim S [2]
  • Kobayashi K [2]
  • Ishikita H [2]
  • Nomura N [2]
  • Tsujimura M [2]
  • Inoue A [2]

Journal

  • CELL [5]
  • NAT COMMUN [2]

Microscope

  • FEI TITAN KRIOS [6]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K3 6K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]

External links

  • EMPIAR [6]
  • PDB [6]
  • ChEMBL [5]
  • ChEBI [4]
  • DrugBank [4]
  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
  • Complex Portal [1]
Sort by: Download
Showing 1 - 7 of 7. Page 1 of 1
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EMD-39003
Download Map
3D View
Raw data
EMPIAR-12493
TUG-1375 and 4-CMTB-bound human FFA2 in complex with Gi
Release date: April 2, 2025
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 8y6w
Q-score: 0.477

Kugawa M, Kawakami K, Kise R, Suomivuori CM, Tsujimura M, Kobayashi K, Kojima A, Inoue WJ, Fukuda M, Matsui TE, Fukunaga A, Koyanagi J, Kim S, Ikeda H, Yamashita K, Saito K, Ishikita H, Dror RO, Inoue A, Kato HE

Nat Commun (2025) 16 pp. 2809-2809 [ DOI: doi:10.1038/s41467-025-57983-4 Pubmed: 40140663 ]

EMD-39004
Download Map
3D View
Raw data
EMPIAR-12493
GLPG0974-bound human FFA2
Release date: April 2, 2025
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 8y6y
Q-score: 0.375

Kugawa M, Kawakami K, Kise R, Suomivuori CM, Tsujimura M, Kobayashi K, Kojima A, Inoue WJ, Fukuda M, Matsui TE, Fukunaga A, Koyanagi J, Kim S, Ikeda H, Yamashita K, Saito K, Ishikita H, Dror RO, Inoue A, Kato HE

Nat Commun (2025) 16 pp. 2809-2809 [ DOI: doi:10.1038/s41467-025-57983-4 Pubmed: 40140663 ]

EMD-34530
Download Map
3D View
Raw data
EMPIAR-11558
Membrane protein A
Release date: Sept. 6, 2023
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 8h86
Q-score: 0.661

Tajima S, Kim YS, Fukuda M, Jo Y, Wang PY, Paggi JM, Inoue M, Byrne EFX, Kishi KE, Nakamura S, Ramakrishnan C, Takaramoto S, Nagata T, Konno M, Sugiura M, Katayama K, Matsui TE, Yamashita K, Kim S, Ikeda H, Kim J, Kandori H, Dror RO, Inoue K, Deisseroth K, Kato HE

Cell (2023) 186 pp. 4325-4344.e26 [ Pubmed: 37652010 DOI: doi:10.1016/j.cell.2023.08.009 ]

EMD-34531
Download Map
3D View
Raw data
EMPIAR-11558
Membrane protein B
Release date: Sept. 6, 2023
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 8h87
Q-score: 0.682

Tajima S, Kim YS, Fukuda M, Jo Y, Wang PY, Paggi JM, Inoue M, Byrne EFX, Kishi KE, Nakamura S, Ramakrishnan C, Takaramoto S, Nagata T, Konno M, Sugiura M, Katayama K, Matsui TE, Yamashita K, Kim S, Ikeda H, Kim J, Kandori H, Dror RO, Inoue K, Deisseroth K, Kato HE

Cell (2023) 186 pp. 4325-4344.e26 [ Pubmed: 37652010 DOI: doi:10.1016/j.cell.2023.08.009 ]

EMD-35713
Download Map
3D View
Raw data
EMPIAR-11558
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Release date: Sept. 6, 2023
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 8iu0
Q-score: 0.636

Tajima S, Kim YS, Fukuda M, Jo Y, Wang PY, Paggi JM, Inoue M, Byrne EFX, Kishi KE, Nakamura S, Ramakrishnan C, Takaramoto S, Nagata T, Konno M, Sugiura M, Katayama K, Matsui TE, Yamashita K, Kim S, Ikeda H, Kim J, Kandori H, Dror RO, Inoue K, Deisseroth K, Kato HE

Cell (2023) 186 pp. 4325-4344.e26 [ Pubmed: 37652010 DOI: doi:10.1016/j.cell.2023.08.009 ]

EMD-32377
Download Map
3D View
Raw data
EMPIAR-10926
2.02 angstrom cryo-EM structure of the pump-like channelrhodopsin ChRmine
Release date: Feb. 2, 2022
Resolution: 2.02 Å
EM Method: Single-particle
Fitted PDBs: 7w9w
Q-score: 0.708

Kishi KE, Kim YS, Fukuda M, Inoue M, Kusakizako T, Wang PY, Ramakrishnan C, Byrne EFX, Thadhani E, Paggi JM, Matsui TE, Yamashita K, Nagata T, Konno M, Quirin S, Lo M, Benster T, Uemura T, Liu K, Shibata M, Nomura N, Iwata S, Nureki O, Dror RO, Inoue K, Deisseroth K, Kato HE

Cell (2022) 185 pp. 672- [ Pubmed: 35114111 DOI: doi:10.1016/j.cell.2022.01.007 ]

EMD-32378
Download Map
3D View
2.12 angstrom cryo-EM map of the pump-like channelrhodopsin ChRmine with Fab antibody fragment
Release date: Feb. 2, 2022
Resolution: 2.12 Å
EM Method: Single-particle

Kishi KE, Kim YS, Fukuda M, Inoue M, Kusakizako T, Wang PY, Ramakrishnan C, Byrne EFX, Thadhani E, Paggi JM, Matsui TE, Yamashita K, Nagata T, Konno M, Quirin S, Lo M, Benster T, Uemura T, Liu K, Shibata M, Nomura N, Iwata S, Nureki O, Dror RO, Inoue K, Deisseroth K, Kato HE

Cell (2022) 185 pp. 672-689.e23 [ Pubmed: 35114111 DOI: doi:10.1016/j.cell.2022.01.007 ]

Sort by: Download
Showing 1 - 7 of 7. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Complex [7]
  • Protein [7]
  • Ligand [6]

Organism

  • Hyphochytrium catenoides [3]
  • Rhodomonas lens [2]
  • Homo sapiens [2]
  • Mus musculus [1]

EM Method

  • Single-particle [7]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [2]

Model molecular weight

  • 0-50 kDa [1]
  • 100-250 kDa [5]

Release Date

  • 2025 [2]
  • 2023 [3]
  • 2022 [2]

Author by name

  • Dror RO [7]
  • Fukuda M [7]
  • Kato HE [7]
  • Matsui TE [7]
  • Yamashita K [7]
  • Byrne EFX [5]
  • Deisseroth K [5]
  • Ikeda H [5]
  • Inoue K [5]
  • Inoue M [5]
  • Kim S [5]
  • Kim Y [5]
  • Kim YS [5]
  • Kishi KE [5]
  • Konno M [5]
  • Nagata T [5]
  • Paggi JM [5]
  • Ramakrishnan C [5]
  • Wang PY [5]
  • Jo Y [3]
  • Kandori H [3]
  • Katayama K [3]
  • Kim J [3]
  • Nakamura S [3]
  • Sugiura M [3]
  • Tajima S [3]
  • Takaramoto S [3]
  • Benster T [2]
  • Fukunaga A [2]
  • Inoue A [2]
  • Inoue W [2]
  • Inoue WJ [2]
  • Ishikita H [2]
  • Iwata S [2]
  • Kawakami K [2]
  • Kise R [2]
  • Kobayashi K [2]
  • Kojima A [2]
  • Koyanagi J [2]
  • Kugawa M [2]
  • Kusakizako T [2]
  • Liu K [2]
  • Lo M [2]
  • Nomura N [2]
  • Nureki O [2]
  • Quirin S [2]
  • Saito K [2]
  • Shibata M [2]
  • Suomivuori CM [2]
  • Thadhani E [2]
  • Tsujimura M [2]
  • Uemura T [2]

Author by ORCID

  • Kato HE [7]
  • Yamashita K [7]
  • Dror RO [7]
  • Wang PY [5]
  • Fukuda M [4]
  • Tajima S [3]
  • Jo Y [3]
  • Takaramoto S [3]
  • Shibata M [2]
  • Nagata T [2]
  • Byrne EFX [2]
  • Saito K [2]
  • Suomivuori CM [2]
  • Kawakami K [2]
  • Kim S [2]
  • Kobayashi K [2]
  • Ishikita H [2]
  • Nomura N [2]
  • Tsujimura M [2]
  • Inoue A [2]

Journal

  • CELL [5]
  • NAT COMMUN [2]

Microscope

  • FEI TITAN KRIOS [6]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K3 6K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]

External links

  • EMPIAR [6]
  • PDB [6]
  • ChEMBL [5]
  • ChEBI [4]
  • DrugBank [4]
  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
  • Complex Portal [1]