Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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grant_code:"21-44-07002"

Filter By

Current Database

  • EMDB [23]

Current status

  • REL [23]

Sample type

  • Virus [23]
  • Protein [8]

Organism

  • Tequintavirus dt57c [21]
  • 1567006 [2]
  • Certrevirus phite [1]

EM Method

  • Single-particle [12]
  • Tomography [9]
  • Helical reconstruction [2]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 1-2 MDa [2]
  • 2-5 MDa [2]
  • > 10 MDa [2]

Release Date

  • 2025 [1]
  • 2023 [22]

Author by name

  • Ayala R [23]
  • Wolf M [23]
  • Chen TH [22]
  • Golomidova AK [22]
  • Kulikov EE [22]
  • Letarov AV [22]
  • Moiseenko AV [22]
  • Orekhov PS [22]
  • Sokolova OS [22]
  • Street MA [22]
  • Bostina M [1]
  • Fineran PC [1]
  • Hodgkinson-bean J [1]
  • Jayawardena N [1]
  • Keal J [1]
  • Mayo-munoz D [1]
  • Rutter GL [1]
  • Watson BNJ [1]

Author by ORCID

  • Wolf M [23]
  • Ayala R [23]
  • Street MA [22]
  • Chen TH [22]
  • Letarov AV [22]
  • Moiseenko AV [22]
  • Orekhov PS [22]
  • Sokolova OS [22]
  • Hodgkinson-bean J [1]
  • Fineran PC [1]
  • Mayo-munoz D [1]
  • Watson BNJ [1]
  • Bostina M [1]
  • Rutter GL [1]

Journal

  • NAT COMMUN [23]

Software

  • CRYOSPARC [10]
  • RELION [2]
  • CISTEM [1]

Microscope

  • FEI TITAN KRIOS [23]

Electron Source

  • FIELD EMISSION GUN [23]

Film or detector model

  • FEI FALCON III 4K X 4K [23]

External links

  • PDB [7]
  • PDBe-Kb [7]
  • UniProt [7]
  • InterPro [6]
  • Pfam [5]
  • Gene Ontology [3]
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Showing 1 - 10 of 23. Page 1 of 3
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EMD-45420
Download Map
3D View
Bacteriophage PhiTE contracted tail
Release date: April 16, 2025
Resolution: 3.49 Å
EM Method: Helical reconstruction
Fitted PDBs: 9cba
Q-score: 0.518

Hodgkinson-Bean J, Ayala R, Jayawardena N, Rutter GL, Watson BNJ, Mayo-Munoz D, Keal J, Fineran PC, Wolf M, Bostina M

Nat Commun (2025) 16 pp. 3257-3257 [ Pubmed: 40188083 DOI: doi:10.1038/s41467-025-58514-x ]

EMD-34920
Download Map
3D View
Capsid of DT57C bacteriophage in the full state
Release date: Dec. 13, 2023
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ho3
Q-score: 0.524

Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

Nat Commun (2023) 14 pp. 8205-8205 [ Pubmed: 38081816 DOI: doi:10.1038/s41467-023-43824-9 ]

EMD-34949
Download Map
3D View
Capsid of DT57C bacteriophage in the empty state
Release date: Dec. 13, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8hqk
Q-score: 0.507

Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

Nat Commun (2023) 14 pp. 8205-8205 [ Pubmed: 38081816 DOI: doi:10.1038/s41467-023-43824-9 ]

EMD-34952
Composite map
Download Map
3D View
Neck of DT57C bacteriophage in the full state
Release date: Dec. 13, 2023
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8hqo
Q-score: 0.441

Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

Nat Commun (2023) 14 pp. 8205-8205 [ Pubmed: 38081816 DOI: doi:10.1038/s41467-023-43824-9 ]

EMD-34955
Composite map
Download Map
3D View
Baseplate of DT57C bacteriophage in the full state
Release date: Dec. 13, 2023
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8hqz
Q-score: 0.446

Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

Nat Commun (2023) 14 pp. 8205-8205 [ Pubmed: 38081816 DOI: doi:10.1038/s41467-023-43824-9 ]

EMD-34968
Download Map
3D View
Straight fiber of DT57C bacteriophage in the full state
Release date: Dec. 13, 2023
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 8hre
Q-score: 0.136

Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

Nat Commun (2023) 14 pp. 8205-8205 [ Pubmed: 38081816 DOI: doi:10.1038/s41467-023-43824-9 ]

EMD-34972
Download Map
3D View
Tail tube of DT57C bacteriophage in the full state
Release date: Dec. 13, 2023
Resolution: 4.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 8hrg
Q-score: 0.347

Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

Nat Commun (2023) 14 pp. 8205-8205 [ Pubmed: 38081816 DOI: doi:10.1038/s41467-023-43824-9 ]

EMD-34973
Download Map
3D View
Curved tail segment of the DT57C bacteriophage in the full state
Release date: Dec. 13, 2023
Resolution: 4.6 Å
EM Method: Single-particle

Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

Nat Commun (2023) 14 pp. 8205-8205 [ Pubmed: 38081816 DOI: doi:10.1038/s41467-023-43824-9 ]

EMD-35003
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3D View
Focused refinement of the TTrP region of the neck of the DT57C bacteriophage in the full state
Release date: Dec. 13, 2023
Resolution: 4.0 Å
EM Method: Single-particle

Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

Nat Commun (2023) 14 pp. 8205-8205 [ Pubmed: 38081816 DOI: doi:10.1038/s41467-023-43824-9 ]

EMD-35006
Download Map
3D View
Map of the neck of the DT57C bacteriophage in the full state with C12 symmetry
Release date: Dec. 13, 2023
Resolution: 3.4 Å
EM Method: Single-particle

Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

Nat Commun (2023) 14 pp. 8205-8205 [ Pubmed: 38081816 DOI: doi:10.1038/s41467-023-43824-9 ]

Sort by: Download
Showing 1 - 10 of 23. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [23]

Current status

  • REL [23]

Sample type

  • Virus [23]
  • Protein [8]

Organism

  • Tequintavirus dt57c [21]
  • 1567006 [2]
  • Certrevirus phite [1]

EM Method

  • Single-particle [12]
  • Tomography [9]
  • Helical reconstruction [2]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 1-2 MDa [2]
  • 2-5 MDa [2]
  • > 10 MDa [2]

Release Date

  • 2025 [1]
  • 2023 [22]

Author by name

  • Ayala R [23]
  • Wolf M [23]
  • Chen TH [22]
  • Golomidova AK [22]
  • Kulikov EE [22]
  • Letarov AV [22]
  • Moiseenko AV [22]
  • Orekhov PS [22]
  • Sokolova OS [22]
  • Street MA [22]
  • Bostina M [1]
  • Fineran PC [1]
  • Hodgkinson-bean J [1]
  • Jayawardena N [1]
  • Keal J [1]
  • Mayo-munoz D [1]
  • Rutter GL [1]
  • Watson BNJ [1]

Author by ORCID

  • Wolf M [23]
  • Ayala R [23]
  • Street MA [22]
  • Chen TH [22]
  • Letarov AV [22]
  • Moiseenko AV [22]
  • Orekhov PS [22]
  • Sokolova OS [22]
  • Hodgkinson-bean J [1]
  • Fineran PC [1]
  • Mayo-munoz D [1]
  • Watson BNJ [1]
  • Bostina M [1]
  • Rutter GL [1]

Journal

  • NAT COMMUN [23]

Software

  • CRYOSPARC [10]
  • RELION [2]
  • CISTEM [1]

Microscope

  • FEI TITAN KRIOS [23]

Electron Source

  • FIELD EMISSION GUN [23]

Film or detector model

  • FEI FALCON III 4K X 4K [23]

External links

  • PDB [7]
  • PDBe-Kb [7]
  • UniProt [7]
  • InterPro [6]
  • Pfam [5]
  • Gene Ontology [3]