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grant_code:"206377"

Filter By

Current Database

  • EMDB [14]

Current status

  • REL [14]

Sample type

  • Protein [13]
  • Virus [10]
  • Complex [4]
  • DNA [2]
  • RNA [1]

Organism

  • 3144506 [6]
  • Rhodobacter capsulatus [4]
  • Thermus virus p23-45 [4]
  • Rhodobacter capsulatus [2]
  • Enterobacteria phage hk97 [2]
  • Nipah virus [1]
  • (no species) [1]
  • 2202564 [1]
  • Byrnievirus hk97 [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [12]
  • Subtomogram averaging [2]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 20Å and < 30Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 500-1000 kDa [2]
  • 2-5 MDa [2]
  • > 10 MDa [2]

Release Date

  • 2024 [6]
  • 2023 [2]
  • 2022 [1]
  • 2021 [1]
  • 2020 [1]
  • 2019 [3]

Author by name

  • Antson AA [13]
  • Chechik M [12]
  • Jenkins HT [9]
  • Alim NTB [6]
  • Bardy P [6]
  • Beatty JT [6]
  • Blaza JN [6]
  • Botka T [6]
  • Byrom L [6]
  • Fogg PCM [6]
  • Hart SJ [6]
  • Kirchberger PC [6]
  • Konig HC [6]
  • Macdonald CIW [6]
  • Nicholas TR [6]
  • Traore DAK [6]
  • Turkenburg JP [6]
  • Bayfield OW [5]
  • Cheng N [4]
  • Dykeman EC [4]
  • Hesketh EL [4]
  • Minakhin L [4]
  • Ranson NA [4]
  • Severinov K [4]
  • Steven AC [4]
  • Winkler DC [4]
  • Greive SJ [3]
  • Klimuk E [3]
  • Bhattacharjee A [1]
  • Gomez-raya-vilanova MV [1]
  • Homberger C [1]
  • Ker DS [1]
  • Kerrinnes T [1]
  • Leskinen K [1]
  • Pajunen MI [1]
  • Rosenqvist P [1]
  • Skurnik M [1]
  • Smith JLR [1]
  • Virta P [1]
  • Voge J [1]
  • Vogel J [1]

Author by ORCID

  • Antson AA [13]
  • Jenkins HT [9]
  • Fogg PCM [6]
  • Blaza JN [6]
  • Bardy P [6]
  • Beatty JT [6]
  • Kirchberger PC [6]
  • Traore DAK [6]
  • Botka T [6]
  • Chechik M [5]
  • Bayfield OW [5]
  • Klimuk E [3]
  • Greive SJ [3]
  • Severinov K [3]
  • Ranson NA [3]
  • Hesketh EL [3]
  • Minakhin L [3]
  • Winkler DC [3]
  • Steven AC [3]
  • Pajunen MI [1]
  • Leskinen K [1]
  • Skurnik M [1]
  • Rosenqvist P [1]
  • Gomez-raya-vilanova MV [1]
  • Ker DS [1]
  • Homberger C [1]
  • Bhattacharjee A [1]
  • Vogel J [1]
  • Smith JLR [1]

Journal

  • BIORXIV [8]
  • PNAS [5]
  • ELIFE [1]
  • NUCLEIC ACIDS RES [1]
  • PLOS PATHOG [1]

Software

  • RELION [12]
  • EMAN2 [2]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [7]
  • TFS GLACIOS [5]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [14]

Film or detector model

  • FEI FALCON III 4K X 4K [5]
  • FEI FALCON IV 4K X 4K [5]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • EMPIAR [8]
  • PDBe-Kb [8]
  • UniProt [8]
  • PDB [7]
  • Gene Ontology [4]
  • InterPro [4]
  • Pfam [4]
  • AlphaFold DB [2]
Sort by: Download
Showing 1 - 10 of 14. Page 1 of 2
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EMD-50358
Download Map
3D View
Raw data
EMPIAR-12153
In vitro-induced genome-releasing intermediate of Rhodobacter microvirus Ebor computed with C5 symmetry
Release date: June 26, 2024
Resolution: 25.0 Å
EM Method: Single-particle

Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA

bioRxiv (2024) [ Pubmed: 38915634 DOI: doi:10.1101/2024.06.11.598214 ]

EMD-50356
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3D View
Raw data
EMPIAR-12156
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Release date: June 12, 2024
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9ffg
Q-score: 0.49

Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA

bioRxiv (2024) [ Pubmed: 38915634 DOI: doi:10.1101/2024.06.11.598214 ]

EMD-50357
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3D View
Raw data
EMPIAR-12148
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Release date: June 12, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9ffh
Q-score: 0.456

Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA

bioRxiv (2024) [ Pubmed: 38915634 DOI: doi:10.1101/2024.06.11.598214 ]

EMD-50359
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3D View
Raw data
EMPIAR-12168
Rhodobacter microvirus Ebor attached to B10 host cell reconstructed by single particle analysis with applied C5 symmetry
Release date: June 12, 2024
Resolution: 7.84 Å
EM Method: Single-particle

Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA

bioRxiv (2024) [ Pubmed: 38915634 DOI: doi:10.1101/2024.06.11.598214 ]

EMD-50360
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3D View
Raw data
EMPIAR-12170
Rhodobacter microvirus Ebor attached to the outer membrane vesicle
Release date: June 12, 2024
Resolution: 13.2 Å
EM Method: Subtomogram averaging

Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA

bioRxiv (2024) [ Pubmed: 38915634 DOI: doi:10.1101/2024.06.11.598214 ]

EMD-50361
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3D View
Raw data
EMPIAR-12185
Rhodobacter microvirus Ebor attached to the host cell reconstructed by subtomogram averaging
Release date: June 12, 2024
Resolution: 31.0 Å
EM Method: Subtomogram averaging

Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA

bioRxiv (2024) [ Pubmed: 38915634 DOI: doi:10.1101/2024.06.11.598214 ]

EMD-17794
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3D View
Raw data
EMPIAR-11620
HK97 small terminase in complex with DNA after focused classification
Release date: Aug. 9, 2023
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8pop
Q-score: 0.561

Chechik M, Greive SJ, Antson AA, Jenkins HT

PNAS (2024) 121 pp. e2406138121-e2406138121 [ DOI: doi:10.1073/pnas.2406138121 Pubmed: 39116131 ]

EMD-17818
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Raw data
EMPIAR-11620
Complex of HK97 small terminase with DNA
Release date: Aug. 9, 2023
Resolution: 2.92 Å
EM Method: Single-particle

Chechik M, Greive SJ, Antson AA, Jenkins HT

PNAS (2024) 121 pp. e2406138121-e2406138121 [ DOI: doi:10.1073/pnas.2406138121 Pubmed: 39116131 ]

EMD-12590
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Bacteriophage YerA41 head icosahedral reconstruction
Release date: March 23, 2022
Resolution: 5.62 Å
EM Method: Single-particle

Gomez-Raya-Vilanova MV, Leskinen K, Bhattacharjee A, Virta P, Rosenqvist P, Smith JLR, Bayfield OW, Homberger C, Kerrinnes T, Vogel J, Pajunen MI, Skurnik M

Nucleic Acids Res (2022) 50 pp. 3985-3997 [ DOI: doi:10.1093/nar/gkac203 Pubmed: 35357498 ]

EMD-12581
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CryoEM structure of the Nipah virus nucleocapsid single helical turn assembly
Release date: July 7, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7nt5
Q-score: 0.396

Ker DS, Jenkins HT, Greive SJ, Antson AA

PLoS Pathog (2021) 17 pp. e1009740-e1009740 [ DOI: doi:10.1371/journal.ppat.1009740 Pubmed: 34270629 ]

Sort by: Download
Showing 1 - 10 of 14. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [14]

Current status

  • REL [14]

Sample type

  • Protein [13]
  • Virus [10]
  • Complex [4]
  • DNA [2]
  • RNA [1]

Organism

  • 3144506 [6]
  • Rhodobacter capsulatus [4]
  • Thermus virus p23-45 [4]
  • Rhodobacter capsulatus [2]
  • Enterobacteria phage hk97 [2]
  • Nipah virus [1]
  • (no species) [1]
  • 2202564 [1]
  • Byrnievirus hk97 [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [12]
  • Subtomogram averaging [2]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 20Å and < 30Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 500-1000 kDa [2]
  • 2-5 MDa [2]
  • > 10 MDa [2]

Release Date

  • 2024 [6]
  • 2023 [2]
  • 2022 [1]
  • 2021 [1]
  • 2020 [1]
  • 2019 [3]

Author by name

  • Antson AA [13]
  • Chechik M [12]
  • Jenkins HT [9]
  • Alim NTB [6]
  • Bardy P [6]
  • Beatty JT [6]
  • Blaza JN [6]
  • Botka T [6]
  • Byrom L [6]
  • Fogg PCM [6]
  • Hart SJ [6]
  • Kirchberger PC [6]
  • Konig HC [6]
  • Macdonald CIW [6]
  • Nicholas TR [6]
  • Traore DAK [6]
  • Turkenburg JP [6]
  • Bayfield OW [5]
  • Cheng N [4]
  • Dykeman EC [4]
  • Hesketh EL [4]
  • Minakhin L [4]
  • Ranson NA [4]
  • Severinov K [4]
  • Steven AC [4]
  • Winkler DC [4]
  • Greive SJ [3]
  • Klimuk E [3]
  • Bhattacharjee A [1]
  • Gomez-raya-vilanova MV [1]
  • Homberger C [1]
  • Ker DS [1]
  • Kerrinnes T [1]
  • Leskinen K [1]
  • Pajunen MI [1]
  • Rosenqvist P [1]
  • Skurnik M [1]
  • Smith JLR [1]
  • Virta P [1]
  • Voge J [1]
  • Vogel J [1]

Author by ORCID

  • Antson AA [13]
  • Jenkins HT [9]
  • Fogg PCM [6]
  • Blaza JN [6]
  • Bardy P [6]
  • Beatty JT [6]
  • Kirchberger PC [6]
  • Traore DAK [6]
  • Botka T [6]
  • Chechik M [5]
  • Bayfield OW [5]
  • Klimuk E [3]
  • Greive SJ [3]
  • Severinov K [3]
  • Ranson NA [3]
  • Hesketh EL [3]
  • Minakhin L [3]
  • Winkler DC [3]
  • Steven AC [3]
  • Pajunen MI [1]
  • Leskinen K [1]
  • Skurnik M [1]
  • Rosenqvist P [1]
  • Gomez-raya-vilanova MV [1]
  • Ker DS [1]
  • Homberger C [1]
  • Bhattacharjee A [1]
  • Vogel J [1]
  • Smith JLR [1]

Journal

  • BIORXIV [8]
  • PNAS [5]
  • ELIFE [1]
  • NUCLEIC ACIDS RES [1]
  • PLOS PATHOG [1]

Software

  • RELION [12]
  • EMAN2 [2]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [7]
  • TFS GLACIOS [5]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [14]

Film or detector model

  • FEI FALCON III 4K X 4K [5]
  • FEI FALCON IV 4K X 4K [5]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • EMPIAR [8]
  • PDBe-Kb [8]
  • UniProt [8]
  • PDB [7]
  • Gene Ontology [4]
  • InterPro [4]
  • Pfam [4]
  • AlphaFold DB [2]