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grant_code:"2018-05946"

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Current Database

  • EMDB [12]

Current status

  • REL [12]

Sample type

  • Complex [12]
  • Protein [12]
  • RNA [12]
  • Ligand [7]

Organism

  • Giardia intestinalis [5]
  • Escherichia coli [5]
  • Escherichia coli [4]
  • Giardia intestinalis [2]
  • Pseudoalteromonas translucida [1]

EM Method

  • Single-particle [12]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [4]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 2-5 MDa [11]

Release Date

  • 2026 [1]
  • 2024 [4]
  • 2023 [7]

Author by name

  • Sanyal S [12]
  • Emmerich AG [8]
  • Emmerich A [7]
  • Majumdar S [7]
  • Mandava CS [7]
  • Krakovka S [6]
  • Svard SG [6]
  • Larsson DSD [4]
  • Pundir S [4]
  • Selmer M [4]
  • Godsora BKJ [1]
  • Parajuli NP [1]
  • Pavlov MY [1]
  • Singh V [1]

Author by ORCID

  • Sanyal S [11]
  • Mandava CS [6]
  • Larsson DSD [4]
  • Selmer M [4]
  • Pundir S [4]
  • Emmerich A [1]
  • Parajuli NP [1]

Journal

  • NUCLEIC ACIDS RES [6]
  • TO BE PUBLISHED [5]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [5]

Microscope

  • FEI TITAN KRIOS [7]
  • TFS KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [12]

Film or detector model

  • GATAN K2 BASE 4K X 4K [5]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • FEI FALCON II 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [11]
  • Gene Ontology [11]
  • InterPro [11]
  • PDB [11]
  • PDBe-Kb [11]
  • Pfam [11]
  • UniProt [11]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • Complex Portal [4]
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Showing 1 - 10 of 12. Page 1 of 2
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EMD-52192
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Cryo-EM composite structure of 70S ribosome of marine cold bacterium Pseudoalteromonas translucida P. haloplanktis TAC125.
Composite map
CryoEM
Release date: July 15, 2026
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 9hig
Q-score: 0.561

Singh V, Godsora BKJ, Emmerich AG, Majumdar S, Sanyal S

To Be Published

EMD-18458
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3D View
E167K RF2 on E. coli 70S release complex with UAA
CryoEM
Release date: Sept. 25, 2024
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8qk7
Q-score: 0.568

Pundir S, Larsson DSD, Selmer M, Sanyal S

To Be Published

EMD-17346
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3D View
E167K RF2 on E. coli 70S release complex with UGG Structure I
CryoEM
Release date: May 22, 2024
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8p16
Q-score: 0.543

Pundir S, Larsson DSD, Selmer M, Sanyal S

To Be Published

EMD-17347
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E167K RF2 on E. coli 70S release complex with UGG Structure II
CryoEM
Release date: May 22, 2024
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8p17
Q-score: 0.545

Pundir S, Larsson DSD, Selmer M, Sanyal S

To Be Published

EMD-17348
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3D View
E167K RF2 on E. coli 70S release complex with UGG Structure III
CryoEM
Release date: May 22, 2024
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8p18
Q-score: 0.546

Pundir S, Larsson DSD, Selmer M, Sanyal S

To Be Published

EMD-16226
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Giardia Ribosome in PRE-T Classical State C
CryoEM
Release date: March 22, 2023
Resolution: 6.49 Å
EM Method: Single-particle
Fitted PDBs: 8bsj
Q-score: 0.411

Majumdar S, Emmerich A, Krakovka S, Mandava CS, Svard SG, Sanyal S

Nucleic Acids Res (2023) 51 pp. 3436-3451 [ Pubmed: 36912103 DOI: doi:10.1093/nar/gkad176 ]

EMD-16228
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3D View
Giardia Ribosome in PRE-T Hybrid State D1
CryoEM
Release date: March 22, 2023
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8btd
Q-score: 0.366

Majumdar S, Emmerich A, Krakovka S, Mandava CS, Svard SG, Sanyal S

Nucleic Acids Res (2023) 51 pp. 3436-3451 [ Pubmed: 36912103 DOI: doi:10.1093/nar/gkad176 ]

EMD-16235
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3D View
Giardia Ribosome in PRE-T Hybrid State D2
CryoEM
Release date: March 22, 2023
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 8btr
Q-score: 0.499

Majumdar S, Emmerich A, Krakovka S, Mandava CS, Svard SG, Sanyal S

Nucleic Acids Res (2023) 51 pp. 3436-3451 [ Pubmed: 36912103 DOI: doi:10.1093/nar/gkad176 ]

EMD-16211
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Giardia ribosome in POST-T state A1
CryoEM
Release date: March 15, 2023
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8br8
Q-score: 0.513

Majumdar S, Emmerich A, Krakovka S, Mandava CS, Svard SG, Sanyal S

Nucleic Acids Res (2023) 51 pp. 3436-3451 [ Pubmed: 36912103 DOI: doi:10.1093/nar/gkad176 ]

EMD-16222
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3D View
Giardia ribosome in POST-T state, no E-site tRNA A6
CryoEM
Release date: March 15, 2023
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8brm
Q-score: 0.462

Majumdar S, Emmerich A, Krakovka S, Mandava CS, Svard SG, Sanyal S

Nucleic Acids Res (2023) 51 pp. 3436-3451 [ Pubmed: 36912103 DOI: doi:10.1093/nar/gkad176 ]

Sort by: Download
Showing 1 - 10 of 12. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [12]

Current status

  • REL [12]

Sample type

  • Complex [12]
  • Protein [12]
  • RNA [12]
  • Ligand [7]

Organism

  • Giardia intestinalis [5]
  • Escherichia coli [5]
  • Escherichia coli [4]
  • Giardia intestinalis [2]
  • Pseudoalteromonas translucida [1]

EM Method

  • Single-particle [12]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [4]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 2-5 MDa [11]

Release Date

  • 2026 [1]
  • 2024 [4]
  • 2023 [7]

Author by name

  • Sanyal S [12]
  • Emmerich AG [8]
  • Emmerich A [7]
  • Majumdar S [7]
  • Mandava CS [7]
  • Krakovka S [6]
  • Svard SG [6]
  • Larsson DSD [4]
  • Pundir S [4]
  • Selmer M [4]
  • Godsora BKJ [1]
  • Parajuli NP [1]
  • Pavlov MY [1]
  • Singh V [1]

Author by ORCID

  • Sanyal S [11]
  • Mandava CS [6]
  • Larsson DSD [4]
  • Selmer M [4]
  • Pundir S [4]
  • Emmerich A [1]
  • Parajuli NP [1]

Journal

  • NUCLEIC ACIDS RES [6]
  • TO BE PUBLISHED [5]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [5]

Microscope

  • FEI TITAN KRIOS [7]
  • TFS KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [12]

Film or detector model

  • GATAN K2 BASE 4K X 4K [5]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • FEI FALCON II 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [11]
  • Gene Ontology [11]
  • InterPro [11]
  • PDB [11]
  • PDBe-Kb [11]
  • Pfam [11]
  • UniProt [11]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • Complex Portal [4]