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grant_code:"2018-05946"

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Current Database

  • EMDB [14]

Current status

  • REL [14]

Sample type

  • Complex [14]
  • Protein [12]
  • RNA [12]
  • Ligand [7]

Organism

  • Giardia intestinalis [5]
  • Escherichia coli [5]
  • Escherichia coli [4]
  • Pseudoalteromonas translucida [3]
  • Giardia intestinalis [2]

EM Method

  • Single-particle [14]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 2-5 MDa [12]

Release Date

  • 2026 [3]
  • 2024 [4]
  • 2023 [7]

Author by name

  • Sanyal S [14]
  • Emmerich AG [10]
  • Majumdar S [9]
  • Emmerich A [7]
  • Mandava CS [7]
  • Krakovka S [6]
  • Svard SG [6]
  • Larsson DSD [4]
  • Pundir S [4]
  • Selmer M [4]
  • Singh V [3]
  • Godsora BKJ [1]
  • Parajuli NP [1]
  • Pavlov MY [1]

Author by ORCID

  • Sanyal S [14]
  • Mandava CS [6]
  • Larsson DSD [4]
  • Selmer M [4]
  • Pundir S [4]
  • Singh V [3]
  • Emmerich AG [3]
  • Majumdar S [3]
  • Emmerich A [1]
  • Parajuli NP [1]
  • Godsora BKJ [1]

Journal

  • TO BE PUBLISHED [7]
  • NUCLEIC ACIDS RES [6]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [7]

Microscope

  • FEI TITAN KRIOS [7]
  • TFS KRIOS [7]

Electron Source

  • FIELD EMISSION GUN [14]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [7]
  • GATAN K2 BASE 4K X 4K [5]
  • FEI FALCON II 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • PDB [14]
  • AlphaFold DB [12]
  • Pfam [12]
  • UniProt [12]
  • Gene Ontology [11]
  • InterPro [11]
  • PDBe-Kb [11]
  • ChEBI [7]
  • ChEMBL [7]
  • DrugBank [7]
  • Complex Portal [4]
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Showing 1 - 10 of 14. Page 1 of 2
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EMD-52555
Download Map
3D View
50S-focused map for: 70S ribosome of marine cold bacterium Pseudoalteromonas translucida P. haloplanktis TAC125.
CryoEM
Focused map
Release date: July 29, 2026
Resolution: 2.28 Å
EM Method: Single-particle

Singh V, Emmerich AG, Majumdar S, Sanyal S

To Be Published

EMD-52556
Download Map
3D View
30S-focused map for: 70S ribosome of marine cold bacterium Pseudoalteromonas translucida P. haloplanktis TAC125.
CryoEM
Focused map
Release date: July 29, 2026
Resolution: 3.04 Å
EM Method: Single-particle

Singh V, Emmerich AG, Majumdar S, Sanyal S

To Be Published

EMD-52192
Download Map
3D View
Cryo-EM composite structure of 70S ribosome of marine cold bacterium Pseudoalteromonas translucida P. haloplanktis TAC125.
Composite map
CryoEM
Release date: July 15, 2026
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 9hig
Q-score: 0.561
Similar entry percentile: 44%

Singh V, Godsora BKJ, Emmerich AG, Majumdar S, Sanyal S

To Be Published

EMD-18458
Download Map
3D View
E167K RF2 on E. coli 70S release complex with UAA
CryoEM
Release date: Sept. 25, 2024
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8qk7
Q-score: 0.568
Similar entry percentile: 77%

Pundir S, Larsson DSD, Selmer M, Sanyal S

To Be Published

EMD-17346
Download Map
3D View
E167K RF2 on E. coli 70S release complex with UGG Structure I
CryoEM
Release date: May 22, 2024
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8p16
Q-score: 0.543
Similar entry percentile: 63%

Pundir S, Larsson DSD, Selmer M, Sanyal S

To Be Published

EMD-17347
Download Map
3D View
E167K RF2 on E. coli 70S release complex with UGG Structure II
CryoEM
Release date: May 22, 2024
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8p17
Q-score: 0.545
Similar entry percentile: 65%

Pundir S, Larsson DSD, Selmer M, Sanyal S

To Be Published

EMD-17348
Download Map
3D View
E167K RF2 on E. coli 70S release complex with UGG Structure III
CryoEM
Release date: May 22, 2024
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8p18
Q-score: 0.546
Similar entry percentile: 65%

Pundir S, Larsson DSD, Selmer M, Sanyal S

To Be Published

EMD-16226
Download Map
3D View
Giardia Ribosome in PRE-T Classical State C
CryoEM
Release date: March 22, 2023
Resolution: 6.49 Å
EM Method: Single-particle
Fitted PDBs: 8bsj
Q-score: 0.411
Similar entry percentile: 100%

Majumdar S, Emmerich A, Krakovka S, Mandava CS, Svard SG, Sanyal S

Nucleic Acids Res (2023) 51 pp. 3436-3451 [ DOI: doi:10.1093/nar/gkad176 Pubmed: 36912103 ]

EMD-16228
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3D View
Giardia Ribosome in PRE-T Hybrid State D1
CryoEM
Release date: March 22, 2023
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8btd
Q-score: 0.366
Similar entry percentile: 97%

Majumdar S, Emmerich A, Krakovka S, Mandava CS, Svard SG, Sanyal S

Nucleic Acids Res (2023) 51 pp. 3436-3451 [ DOI: doi:10.1093/nar/gkad176 Pubmed: 36912103 ]

EMD-16235
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3D View
Giardia Ribosome in PRE-T Hybrid State D2
CryoEM
Release date: March 22, 2023
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 8btr
Q-score: 0.499
Similar entry percentile: 66%

Majumdar S, Emmerich A, Krakovka S, Mandava CS, Svard SG, Sanyal S

Nucleic Acids Res (2023) 51 pp. 3436-3451 [ DOI: doi:10.1093/nar/gkad176 Pubmed: 36912103 ]

Sort by: Download
Showing 1 - 10 of 14. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [14]

Current status

  • REL [14]

Sample type

  • Complex [14]
  • Protein [12]
  • RNA [12]
  • Ligand [7]

Organism

  • Giardia intestinalis [5]
  • Escherichia coli [5]
  • Escherichia coli [4]
  • Pseudoalteromonas translucida [3]
  • Giardia intestinalis [2]

EM Method

  • Single-particle [14]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 2-5 MDa [12]

Release Date

  • 2026 [3]
  • 2024 [4]
  • 2023 [7]

Author by name

  • Sanyal S [14]
  • Emmerich AG [10]
  • Majumdar S [9]
  • Emmerich A [7]
  • Mandava CS [7]
  • Krakovka S [6]
  • Svard SG [6]
  • Larsson DSD [4]
  • Pundir S [4]
  • Selmer M [4]
  • Singh V [3]
  • Godsora BKJ [1]
  • Parajuli NP [1]
  • Pavlov MY [1]

Author by ORCID

  • Sanyal S [14]
  • Mandava CS [6]
  • Larsson DSD [4]
  • Selmer M [4]
  • Pundir S [4]
  • Singh V [3]
  • Emmerich AG [3]
  • Majumdar S [3]
  • Emmerich A [1]
  • Parajuli NP [1]
  • Godsora BKJ [1]

Journal

  • TO BE PUBLISHED [7]
  • NUCLEIC ACIDS RES [6]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [7]

Microscope

  • FEI TITAN KRIOS [7]
  • TFS KRIOS [7]

Electron Source

  • FIELD EMISSION GUN [14]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [7]
  • GATAN K2 BASE 4K X 4K [5]
  • FEI FALCON II 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • PDB [14]
  • AlphaFold DB [12]
  • Pfam [12]
  • UniProt [12]
  • Gene Ontology [11]
  • InterPro [11]
  • PDBe-Kb [11]
  • ChEBI [7]
  • ChEMBL [7]
  • DrugBank [7]
  • Complex Portal [4]