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Filter By

Current Database

  • EMDB [6312]

Current status

  • REL [6312]

Sample type

  • Complex [5422]
  • Protein [4723]
  • Ligand [2633]
  • RNA [568]
  • Virus [460]
  • Cellular component [415]
  • DNA [398]
  • Cell [76]
  • Sample [64]
  • Other [50]
  • Tissue [9]

Organism

  • Homo sapiens [2153]
  • Mus musculus [366]
  • Escherichia coli [365]
  • Synthetic construct [339]
  • Severe acute respiratory syndrome coronavirus [297]
  • Saccharomyces cerevisiae [245]
  • Escherichia coli [204]
  • Rattus norvegicus [166]
  • Oryctolagus cuniculus [142]
  • Human immunodeficiency virus 1 [120]
  • Bos taurus [92]
  • Trypanosoma brucei [91]
  • Saccharomyces cerevisiae [80]
  • Lama glama [74]
  • Xenopus laevis [70]
  • Thermus thermophilus [58]
  • Chlamydomonas reinhardtii [47]
  • Arabidopsis thaliana [44]
  • Escherichia coli [41]
  • Sus scrofa [39]
  • Yarrowia lipolytica [38]
  • Vicugna pacos [37]
  • Gallus gallus [35]
  • Mycolicibacterium smegmatis [34]
  • Macaca mulatta [34]
  • Methanothermobacter marburgensis [32]
  • Enterobacteria phage t4 [30]
  • Euglena gracilis [28]
  • Staphylococcus aureus [26]
  • Danio rerio [25]
  • Pseudomonas phage jbd30 [24]
  • Aquifex aeolicus [24]
  • Pseudomonas aeruginosa [24]
  • Thermococcus profundus [24]
  • Tetrahymena thermophila [24]
  • Mycobacterium tuberculosis [24]
  • Pseudomonas aeruginosa [23]
  • Drosophila melanogaster [23]
  • Morbillivirus hominis [22]
  • Mycolicibacterium smegmatis [21]
  • Porphyridium purpureum [21]
  • Ovis aries [21]
  • Geobacillus stearothermophilus [20]
  • Mycobacterium tuberculosis [19]
  • Enterobacteria phage t4 [19]
  • Vibrio cholerae [19]
  • Influenza a virus [18]
  • Saccharomyces cerevisiae [18]
  • Escherichia phage ms2 [18]
  • Enterovirus b [18]
  • Simian virus 40 [17]
  • Helicobacter pylori [17]
  • Latrodectus tredecimguttatus [17]
  • Bluetongue virus [16]
  • Measles morbillivirus [16]
  • Pseudoalteromonas sp. s983 [16]
  • Caenorhabditis elegans [16]
  • Escherichia coli [16]
  • Equus caballus [16]
  • Orthobornavirus bornaense [15]
  • Salmonella enterica [15]
  • Acetivibrio thermocellus [14]
  • Mycoplasma pneumoniae [14]
  • Dna molecule [14]
  • Severe acute respiratory syndrome coronavirus [14]
  • Staphylococcus phage p68 [13]
  • Chaetomium thermophilum [13]
  • Spinacia oleracea [13]
  • Chikungunya virus [13]
  • Mus musculoides [13]
  • Aequorea victoria [13]
  • Strongylocentrotus purpuratus [13]
  • Enterovirus b [12]
  • Haliangium ochraceum [12]
  • Klebsiella pneumoniae [12]
  • Chaetomium thermophilum [12]
  • Haliangium ochraceum [12]
  • Porcine circovirus 2 [12]
  • Entamoeba histolytica [11]
  • Azotobacter vinelandii [11]
  • Plasmodium falciparum [11]
  • Schizosaccharomyces pombe [11]
  • Xenopus borealis [11]
  • Hantaan orthohantavirus [10]
  • Human immunodeficiency virus 2 [10]
  • Bacillus subtilis [10]
  • Nipah virus [10]
  • Vairimorpha necatrix [10]
  • Synechocystis sp. pcc 6803 [9]
  • Rhinovirus b [9]
  • Bacillus subtilis [9]
  • Clostridioides difficile [9]
  • Brevibacterium linens [9]
  • Gluconobacter japonicus [9]
  • Halothiobacillus neapolitanus [9]
  • (no species) [9]
  • Hepatitis b virus [8]
  • Human immunodeficiency virus 1 [8]
  • Escherichia phage ms2 [8]
  • Pyrococcus furiosus [8]

EM Method

  • Single-particle [5993]
  • Subtomogram averaging [319]

Resolution

  • < 2Å [64]
  • ≥ 2Å and < 3Å [1458]
  • ≥ 3Å and < 4Å [2778]
  • ≥ 4Å and < 5Å [707]
  • ≥ 5Å and < 6Å [184]
  • ≥ 6Å and < 8Å [341]
  • ≥ 8Å and < 12Å [256]
  • ≥ 12Å and < 16Å [112]
  • ≥ 16Å and < 20Å [103]
  • ≥ 20Å and < 30Å [167]
  • ≥ 30Å [134]

Model molecular weight

  • 0-50 kDa [65]
  • 50-100 kDa [193]
  • 100-250 kDa [1178]
  • 250-500 kDa [1066]
  • 500-1000 kDa [680]
  • 1-2 MDa [281]
  • 2-5 MDa [292]
  • 5-10 MDa [119]
  • > 10 MDa [84]

Release Date

  • 2026 [666]
  • 2025 [1153]
  • 2024 [1029]
  • 2023 [748]
  • 2022 [699]
  • 2021 [510]
  • 2020 [508]
  • 2019 [388]
  • 2018 [240]
  • 2017 [176]
  • 2016 [141]
  • 2015 [11]
  • 2014 [9]
  • 2013 [31]
  • 2012 [1]
  • 2010 [2]

Author by name

  • Fuzik T [127]
  • Plevka P [126]
  • Wang H [124]
  • Zhou ZH [124]
  • Liu C [119]
  • Liu S [114]
  • Ward AB [105]
  • Wang Y [104]
  • Xia X [104]
  • Zhang Z [100]
  • Rubinstein JL [99]
  • Zhang X [99]
  • Liu Y [92]
  • Langousis G [90]
  • Guo H [88]
  • Hill KL [88]
  • Kassem AM [88]
  • Shimogawa MM [88]
  • Wijono A [88]
  • Wohlschlegel JA [88]
  • Li S [79]
  • Kishikawa J [78]
  • Zhang Y [78]
  • Kato T [77]
  • Karakas E [76]
  • Chen M [71]
  • Chiu W [71]
  • Gati C [71]
  • Liu J [71]
  • Han GW [70]
  • Wang L [70]
  • Glatt S [68]
  • Sazanov LA [68]
  • Li Y [67]
  • Zhao Y [66]
  • Khan S [65]
  • Kishikawa JI [63]
  • Hillen HS [62]
  • Hrebik D [62]
  • Wang J [62]
  • Lander GC [60]
  • Novacek J [60]
  • Suzuki T [60]
  • Tyson AS [60]
  • Acharya P [59]
  • Haynes BF [59]
  • Biela AP [58]
  • Gao Y [58]
  • Kwong PD [58]
  • Briggs JAG [57]
  • Kushner MG [57]
  • Lan Y [57]
  • Lan YJ [57]
  • Li H [57]
  • Tang Q [57]
  • Edwards RJ [56]
  • Lyumkis D [55]
  • Wang Q [55]
  • Greber BJ [54]
  • Mansouri K [54]
  • Saunders KO [54]
  • Zhang J [54]
  • Chen S [53]
  • Mitsuoka K [53]
  • Ranjbar M [53]
  • Bhabha G [52]
  • Chen J [52]
  • Koziej L [52]
  • Potter CS [51]
  • Hashiguchi T [50]
  • He Y [50]
  • Shi J [50]
  • Stuart DI [50]
  • Xu W [50]
  • Zhou L [50]
  • Anraku Y [49]
  • Carragher B [49]
  • Kita S [49]
  • Maenaka K [49]
  • Chen X [48]
  • Montefiori DC [48]
  • Shirouzu M [48]
  • Carrique L [47]
  • Mascola JR [47]
  • Raunser S [47]
  • Hu Y [46]
  • Richter-dennerlein R [46]
  • Yokoyama K [46]
  • Zhou T [46]
  • Li D [45]
  • Lin TY [45]
  • Cottrell CA [44]
  • Liu T [44]
  • Nakagawa T [44]
  • Nakano A [44]
  • Savva CG [44]
  • Singh J [44]
  • Vercellino I [44]
  • Zhang K [44]
  • Rawski M [43]

Author by ORCID

  • Fuzik T [125]
  • Plevka P [124]
  • Zhou ZH [114]
  • Xia X [104]
  • Shimogawa MM [88]
  • Hill KL [88]
  • Langousis G [88]
  • Wang H [88]
  • Wohlschlegel JA [88]
  • Liu S [88]
  • Rubinstein JL [78]
  • Karakas E [76]
  • Chiu W [70]
  • Kato T [65]
  • Guo H [64]
  • Ward AB [63]
  • Kishikawa JI [62]
  • Hillen HS [61]
  • Hrebik D [61]
  • Gati C [60]
  • Lander GC [58]
  • Tang Q [57]
  • Lan YJ [57]
  • Kwong PD [55]
  • Greber BJ [53]
  • Edwards RJ [52]
  • Sazanov LA [51]
  • Glatt S [49]
  • Novacek J [48]
  • Chen M [47]
  • Richter-dennerlein R [46]
  • Anraku Y [46]
  • Yokoyama K [46]
  • Briggs JAG [46]
  • Vercellino I [44]
  • Ranjbar M [44]
  • Cottrell CA [44]
  • Zhang Z [44]
  • Mansouri K [42]
  • Raunser S [42]
  • Zhou L [42]
  • Koziej L [42]
  • Biela AP [41]
  • Williamson JR [41]
  • Bhabha G [40]
  • Kita S [40]
  • Rehling P [39]
  • Finke AF [39]
  • Boshnakovska A [39]
  • Tan YZ [38]
  • Venugopal H [37]
  • Borgnia MJ [37]
  • Carrique L [36]
  • Huiskonen JT [36]
  • Lee SY [36]
  • Stokes DL [35]
  • Nakagawa T [35]
  • Steyaert J [35]
  • Gerle C [35]
  • Bottcher B [35]
  • Tilahun K [35]
  • Li H [34]
  • Pardon E [34]
  • Hu Y [34]
  • Wu M [34]
  • Lin TY [33]
  • Pinto JR [33]
  • Sempowski GD [33]
  • Shigematsu H [33]
  • Baker D [32]
  • Korostelev AA [32]
  • Shirouzu M [31]
  • Lyumkis D [31]
  • Namba K [31]
  • Ishiguro K [30]
  • Stahlberg H [30]
  • Demo G [30]
  • Pedersen BP [29]
  • Maenaka K [29]
  • Mills DJ [29]
  • Oosterheert W [29]
  • Mitsuoka K [29]
  • Barnes CO [29]
  • Hurley JH [28]
  • Fischer ES [28]
  • Zyla D [28]
  • Wang Y [28]
  • Loveland AB [28]
  • He Y [28]
  • Pantucek R [28]
  • Valentova L [28]
  • Lopez-alonso JP [28]
  • Gil-carton D [28]
  • Pfeffer S [27]
  • Xu W [27]
  • Woo CM [27]
  • Cheng Y [27]
  • Gobeil SMC [27]
  • Hauser BM [27]
  • Saphire EO [27]

Journal

  • NAT COMMUN [1244]
  • TO BE PUBLISHED [541]
  • BIORXIV [456]
  • NATURE [417]
  • PNAS [363]
  • SCIENCE [317]
  • ELIFE [311]
  • NAT STRUCT MOL BIOL [298]
  • SCI ADV [290]
  • CELL [267]
  • MOL CELL [173]
  • STRUCTURE [172]
  • NUCLEIC ACIDS RES [151]
  • COMMUN BIOL [126]
  • EMBO J [109]
  • ACTA CRYSTALLOGR D STRUCT BIOL [106]
  • CELL REP [104]
  • J BIOL CHEM [80]
  • NAT CHEM BIOL [73]
  • J VIROL [62]
  • PLOS PATHOG [57]
  • J MOL BIOL [55]
  • IUCRJ [44]
  • SCI REP [41]
  • NAT MICROBIOL [32]
  • PROTEIN SCI [29]
  • CELL HOST MICROBE [27]
  • IMMUNITY [26]
  • NAT METHODS [24]
  • CELL RES [23]
  • FEBS J [22]
  • J AM CHEM SOC [21]
  • J.MOL.CELL.CARDIOL. [21]
  • PLOS BIOL [21]
  • INT J MOL SCI [20]
  • EMBO REP [19]
  • J STRUCT BIOL [19]
  • NAT PLANTS [19]
  • J CELL BIOL [18]
  • NPJ VACCINES [18]
  • ACS NANO [16]
  • BIOCHEMISTRY [16]
  • COMMUN MATER [16]
  • SCI TRANSL MED [16]
  • GENES DEV [15]
  • J GEN VIROL [15]
  • MBIO [15]
  • ADV SCI [14]
  • J MED CHEM [14]
  • PNAS NEXUS [14]
  • CELL DISCOV [12]
  • VIRUSES [12]
  • LIFE SCI ALLIANCE [11]
  • NAT CATAL [10]
  • NAT NANOTECHNOL [10]
  • ANGEW CHEM INT ED ENGL [9]
  • INT J BIOL MACROMOL [9]
  • PLOS ONE [9]
  • RES SQ [9]
  • BIOCHEM J [8]
  • J BACTERIOL [8]
  • ACS CATAL [7]
  • ACS CHEM BIOL [7]
  • BIOCHEM BIOPHYS RES COMMUN [7]
  • MOL.BIOL.EVOL. [7]
  • NAT BIOTECHNOL [7]
  • BIOCHIM BIOPHYS ACTA BIOENERG [6]
  • BIOMOLECULES [6]
  • HEMASPHERE [6]
  • ISCIENCE [6]
  • J STRUCT BIOL X [6]
  • MACROMOL RAPID COMMUN [6]
  • MICROSCOPY [6]
  • PLANT COMMUN. [6]
  • CELL CHEM BIOL [5]
  • CURR BIOL [5]
  • J IMMUNOL. [5]
  • MICROBIOL IMMUNOL [5]
  • MSPHERE [5]
  • NAT MED [5]
  • NEURON [5]
  • PLOS NEGL TROP DIS [5]
  • RES [5]
  • SCI IMMUNOL [5]
  • SMALL [5]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [4]
  • ANTIMICROB.AGENTS CHEMOTHER. [4]
  • CELL REP MED [4]
  • CURR RES STRUCT BIOL [4]
  • ELECTROCHIM ACTA [4]
  • FRONT MOL BIOSCI [4]
  • MOL PLANT [4]
  • MOL THER [4]
  • MOL THER ADV [4]
  • PROG BIOPHYS MOL BIOL [4]
  • PROTEIN CELL [4]
  • ULTRAMICROSCOPY [4]
  • BIOPHYS J [3]
  • CANCER DISCOV [3]
  • CHEM COMMUN [3]

Software

  • CRYOSPARC [3267]
  • RELION [3262]
  • CTFFIND [621]
  • GCTF [294]
  • WARP [120]
  • FREALIGN [119]
  • CISTEM [110]
  • COOT [70]
  • UCSF CHIMERAX [67]
  • EMAN2 [54]
  • EMAN [53]
  • IMOD [52]
  • DYNAMO [50]
  • PYTOM [33]
  • XMIPP [33]
  • UCSF CHIMERA [30]
  • PHENIX [27]
  • PEET [23]
  • SPHIRE [22]
  • SPIDER [20]
  • APPION [19]
  • CTFTILT [18]
  • EMCLARITY [14]
  • CHIMERA [13]
  • IMAGIC [13]
  • IMOD, RAPTOR, PROTOMO [13]
  • CTFFIND4 [12]
  • ISOLDE [11]
  • IMOD, DYNAMO [10]
  • CTFFIND3 [8]
  • EMIRA [8]
  • FOCUS [8]
  • SCIPION [8]
  • NOVACTF [7]
  • STOPGAP [7]
  • IMOD, PRIISM/IVE [6]
  • JSPR [6]
  • MATLAB [6]
  • TOM TOOLBOX [6]
  • XMIPP, ML, TOMO [6]
  • SIMPLE [5]
  • TOM, AV3 [5]
  • TOMOCTF [5]
  • BSOFT [4]
  • CRYOLO [4]
  • EMREADY [4]
  • FREALIX [4]
  • M [4]
  • MPSA [4]
  • CTFFIND3, LABEL AND SPIDER [3]
  • E2CTF.PY [3]
  • I3 [3]
  • IMOD, XMIPP, TOMO3D [3]
  • MOTIONCORR2 [3]
  • AV3 [2]
  • CHIMERA, SEGGER [2]
  • CTFPHASEFLIP [2]
  • EM [2]
  • ETOMO, DYNAMO [2]
  • MRC, IMOD, IVE [2]
  • NAMD [2]
  • SAMUEL [2]
  • ACE, CTFFIND3 [1]
  • AMIRA [1]
  • CCP4 PACKAGE [1]
  • CHIMERA, VMD, MDFF [1]
  • CTFIND3 [1]
  • FREALIGNX [1]
  • IMOD, AV3, TOM, DYNAMO [1]
  • IMOD, PEET [1]
  • IMOD, SPIDER, BSOFT [1]
  • IMOD, TOMO3D, RELION [1]
  • IMOD, XMIPP, IMAGIC [1]
  • IMOD,RAPTOR,PROTOMO [1]
  • J3DR [1]
  • JALIGN [1]
  • PROTOMO [1]
  • PYSEG [1]
  • PYTO [1]
  • REFMAC [1]
  • REION [1]
  • RSREF [1]
  • SPARX [1]
  • SPRING [1]
  • SUBTOM [1]
  • TOM [1]

Microscope

  • FEI TITAN KRIOS [3423]
  • TFS KRIOS [1607]
  • FEI TALOS ARCTICA [413]
  • TFS GLACIOS [176]
  • FEI POLARA 300 [129]
  • JEOL CRYO ARM 300 [125]
  • FEI TECNAI F20 [63]
  • FEI/PHILIPS EM420 [46]
  • TFS TALOS [42]
  • FEI TITAN [38]
  • FEI TECNAI SPIRIT [37]
  • FEI TECNAI ARCTICA [34]
  • FEI TECNAI 12 [28]
  • FEI TECNAI 20 [26]
  • FEI TECNAI F30 [19]
  • JEOL 2200FS [17]
  • JEOL CRYO ARM 200 [17]
  • JEOL 3200FSC [14]
  • JEOL 2100 [11]
  • FEI/PHILIPS CM300FEG/T [9]
  • JEOL 3200FS [9]
  • JEOL 2200FSC [7]
  • TFS TALOS F200C [7]
  • FEI/PHILIPS CM200FEG [4]
  • TFS TALOS L120C [4]
  • FEI/PHILIPS CM120T [2]
  • JEOL KYOTO-3000SFF [2]
  • OTHER [2]
  • JEOL 1200EXII [1]
  • JEOL 1230 [1]
  • JEOL 2010F [1]
  • JEOL 2100F [1]
  • SHUIMU TOTEM 300S [1]

Electron Source

  • FIELD EMISSION GUN [6148]
  • LAB6 [131]
  • OTHER [26]
  • TUNGSTEN HAIRPIN [7]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [1543]
  • GATAN K2 SUMMIT 4K X 4K [1388]
  • GATAN K3 6K X 4K [1366]
  • FEI FALCON IV 4K X 4K [538]
  • FEI FALCON III 4K X 4K [484]
  • TFS FALCON 4I 4K X 4K [224]
  • FEI FALCON II 4K X 4K [190]
  • GATAN K2 QUANTUM 4K X 4K [186]
  • OTHER [74]
  • GATAN K3 BIOCONTINUUM 6K X 4K [61]
  • GATAN ULTRASCAN 4000 4K X 4K [52]
  • TVIPS TEMCAM-F416 4K X 4K [36]
  • FEI CETA 4K X 4K [26]
  • DIRECT ELECTRON DE-20 5K X 3K [17]
  • FEI EAGLE 2K X 2K [17]
  • FEI EAGLE 4K X 4K [17]
  • DIRECT ELECTRON DE-10 5K X 4K [13]
  • GATAN K2 BASE 4K X 4K [13]
  • GATAN MULTISCAN [10]
  • FEI FALCON I 4K X 4K [8]
  • TVIPS TEMCAM-F216 2K X 2K [8]
  • GATAN ULTRASCAN 1000 2K X 2K [7]
  • GENERIC TVIPS 4K X 4K [5]
  • TVIPS TEMCAM-F415 4K X 4K [5]
  • GATAN K2 4K X 4K [4]
  • GATAN K2 IS 4K X 4K [4]
  • GENERIC CCD [4]
  • KODAK SO-163 FILM [4]
  • DIRECT ELECTRON APOLLO 4K X 4K [3]
  • TVIPS TEMCAM-F224 2K X 2K [3]
  • DIRECT ELECTRON DE-64 8K X 8K [2]
  • GATAN ORIUS SC200 2K X 2K [1]
  • GATAN ORIUS SC600 2.7K X 2.7K [1]
  • GENERIC GATAN 2K X 2K [1]

External links

  • PDB [6283]
  • UniProt [4333]
  • PDBe-Kb [3992]
  • AlphaFold DB [3814]
  • InterPro [3239]
  • Gene Ontology [3180]
  • Pfam [2797]
  • ChEBI [2518]
  • ChEMBL [2293]
  • DrugBank [2099]
  • Complex Portal [1242]
  • EMPIAR [767]
  • SCOP2 [100]
  • CATH [74]
Sort by: Download
Showing 1 - 10 of 6312. Page 1 of 632
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Preview first 10
Download
EMD-55040
Download Map
3D View
Structure of apo BRCA1-A complex in presence of K63-oligoUbATA
CryoEM
Release date: July 8, 2026
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 9smr
Q-score: 0.348

Murachelli AG, El Oualid F, Sixma TK

bioRxiv (2026) [ DOI: doi:10.64898/2026.06.05.730370 ]

EMD-56813
Download Map
3D View
15-subunit assembly of cyanide dihydratase from Stutzerimonas stutzeri Pseudomonas stutzeri AK1
CryoEM
Release date: July 8, 2026
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 28to
Q-score: 0.511

Dlamini LS, Sewell BT

To Be Published

EMD-70397
Download Map
3D View
Structure of the human astrovirus VA1 capsid spike bound to antibody 7C8
CryoEM
Release date: July 8, 2026
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 9oef
Q-score: 0.54

Ghosh A, Dzimianski JV, Lopez T, Espinosa R, Balasco Serrao VH, Arias CF, DuBois RM

To Be Published

EMD-70398
Download Map
3D View
Structure of the human astrovirus VA1 capsid spike bound to antibody 2A2
CryoEM
Release date: July 8, 2026
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 9oeg
Q-score: 0.504

Ghosh A, Dzimianski JV, Lopez T, Espinosa R, Balasco Serrao VH, Arias CF, DuBois RM

To Be Published

EMD-72381
Download Map
3D View
The dimeric KICSTOR-GATOR1 supercomplex constitutive GATOR1 dimer, SZT2 fragment
Composite map
CryoEM
Release date: July 8, 2026
Resolution: 4.2 Å
EM Method: Single-particle

Bayly-Jones C, Lupton CJ, Chang YG, Ellisdon AM

To Be Published

EMD-72520
Download Map
3D View
Eukaryotic translation initiation factor 2-B eIF2B bound to phosphorylated eIF2alpha NTD
CryoEM
Release date: July 8, 2026
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 9y5r
Q-score: 0.489

Dalwadi U, Subramanian A, Deal A, Conrad JE, Nadjsombati T, Venkatesh M, Boone M, Egea PF, He L, Jain N, Lee DJ, Liu Y, Reineke LC, Saito K, Talledge N, Toutkoushian H, Le Vasseur M, Zappa F, de Groot RJ, Acosta-Alvear D, Arthur CP, Nunnari J, Marqusee S, Lawrence RE, Costa-Mattioli M, Crawford JJ, van Kuppeveld FJM, Croll TI, Walter P, Frost A

Nat Chem Biol (2026) [ DOI: doi:10.1038/s41589-026-02256-4 ]

EMD-72521
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3D View
eIF2B lacking the latch helix bound to ISRACT-01 Inactive state
CryoEM
Release date: July 8, 2026
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9y5s
Q-score: 0.501

Dalwadi U, Subramanian A, Deal A, Conrad JE, Nadjsombati T, Venkatesh M, Boone M, Egea PF, He L, Jain N, Lee DJ, Liu Y, Reineke LC, Saito K, Talledge N, Toutkoushian H, Le Vasseur M, Zappa F, de Groot RJ, Acosta-Alvear D, Arthur CP, Nunnari J, Marqusee S, Lawrence RE, Costa-Mattioli M, Crawford JJ, van Kuppeveld FJM, Croll TI, Walter P, Frost A

Nat Chem Biol (2026) [ DOI: doi:10.1038/s41589-026-02256-4 ]

EMD-72522
Download Map
3D View
eIF2B lacking the latch helix bound to ISRACT-02 Active state
CryoEM
Release date: July 8, 2026
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 9y5t
Q-score: 0.554

Dalwadi U, Subramanian A, Deal A, Conrad JE, Nadjsombati T, Venkatesh M, Boone M, Egea PF, He L, Jain N, Lee DJ, Liu Y, Reineke LC, Saito K, Talledge N, Toutkoushian H, Le Vasseur M, Zappa F, de Groot RJ, Acosta-Alvear D, Arthur CP, Nunnari J, Marqusee S, Lawrence RE, Costa-Mattioli M, Crawford JJ, van Kuppeveld FJM, Croll TI, Walter P, Frost A

Nat Chem Biol (2026) [ DOI: doi:10.1038/s41589-026-02256-4 ]

EMD-75723
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3D View
Refined plasminogen binding group A streptococcus M-like protein isolate from AP53 bound to human plasminogen
CryoEM
Release date: July 8, 2026
Resolution: 4.0 Å
EM Method: Single-particle

Readnour BM, Tjia Fleck S, McCann MR, Ayinuola YA, Castellino FJ

Structure (2024) 32 pp. 2231-2243 [ ]

EMD-55048
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3D View
CryoEM structure of NADH:quinone oxidoreductases YjlCD from Bacillus subtilis
CryoEM
Release date: July 1, 2026
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9snk
Q-score: 0.655

Seduk F, Osman R, Garcia PS, Bizien-Jaglin L, Juyoux P, Kosta A, Sauvage S, Mate MJ, Pierrel F, Lebrun R, Schoehn G, Yamaryo-Botte Y, Botte CY, Nicolet Y, Cherrier MV, Walburger A, Magalon A

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-74385-2 Pubmed: 42315832 ]

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Current Database

  • EMDB [6312]

Current status

  • REL [6312]

Sample type

  • Complex [5422]
  • Protein [4723]
  • Ligand [2633]
  • RNA [568]
  • Virus [460]
  • Cellular component [415]
  • DNA [398]
  • Cell [76]
  • Sample [64]
  • Other [50]
  • Tissue [9]

Organism

  • Homo sapiens [2153]
  • Mus musculus [366]
  • Escherichia coli [365]
  • Synthetic construct [339]
  • Severe acute respiratory syndrome coronavirus [297]
  • Saccharomyces cerevisiae [245]
  • Escherichia coli [204]
  • Rattus norvegicus [166]
  • Oryctolagus cuniculus [142]
  • Human immunodeficiency virus 1 [120]
  • Bos taurus [92]
  • Trypanosoma brucei [91]
  • Saccharomyces cerevisiae [80]
  • Lama glama [74]
  • Xenopus laevis [70]
  • Thermus thermophilus [58]
  • Chlamydomonas reinhardtii [47]
  • Arabidopsis thaliana [44]
  • Escherichia coli [41]
  • Sus scrofa [39]
  • Yarrowia lipolytica [38]
  • Vicugna pacos [37]
  • Gallus gallus [35]
  • Mycolicibacterium smegmatis [34]
  • Macaca mulatta [34]
  • Methanothermobacter marburgensis [32]
  • Enterobacteria phage t4 [30]
  • Euglena gracilis [28]
  • Staphylococcus aureus [26]
  • Danio rerio [25]
  • Pseudomonas phage jbd30 [24]
  • Aquifex aeolicus [24]
  • Pseudomonas aeruginosa [24]
  • Thermococcus profundus [24]
  • Tetrahymena thermophila [24]
  • Mycobacterium tuberculosis [24]
  • Pseudomonas aeruginosa [23]
  • Drosophila melanogaster [23]
  • Morbillivirus hominis [22]
  • Mycolicibacterium smegmatis [21]
  • Porphyridium purpureum [21]
  • Ovis aries [21]
  • Geobacillus stearothermophilus [20]
  • Mycobacterium tuberculosis [19]
  • Enterobacteria phage t4 [19]
  • Vibrio cholerae [19]
  • Influenza a virus [18]
  • Saccharomyces cerevisiae [18]
  • Escherichia phage ms2 [18]
  • Enterovirus b [18]
  • Simian virus 40 [17]
  • Helicobacter pylori [17]
  • Latrodectus tredecimguttatus [17]
  • Bluetongue virus [16]
  • Measles morbillivirus [16]
  • Pseudoalteromonas sp. s983 [16]
  • Caenorhabditis elegans [16]
  • Escherichia coli [16]
  • Equus caballus [16]
  • Orthobornavirus bornaense [15]
  • Salmonella enterica [15]
  • Acetivibrio thermocellus [14]
  • Mycoplasma pneumoniae [14]
  • Dna molecule [14]
  • Severe acute respiratory syndrome coronavirus [14]
  • Staphylococcus phage p68 [13]
  • Chaetomium thermophilum [13]
  • Spinacia oleracea [13]
  • Chikungunya virus [13]
  • Mus musculoides [13]
  • Aequorea victoria [13]
  • Strongylocentrotus purpuratus [13]
  • Enterovirus b [12]
  • Haliangium ochraceum [12]
  • Klebsiella pneumoniae [12]
  • Chaetomium thermophilum [12]
  • Haliangium ochraceum [12]
  • Porcine circovirus 2 [12]
  • Entamoeba histolytica [11]
  • Azotobacter vinelandii [11]
  • Plasmodium falciparum [11]
  • Schizosaccharomyces pombe [11]
  • Xenopus borealis [11]
  • Hantaan orthohantavirus [10]
  • Human immunodeficiency virus 2 [10]
  • Bacillus subtilis [10]
  • Nipah virus [10]
  • Vairimorpha necatrix [10]
  • Synechocystis sp. pcc 6803 [9]
  • Rhinovirus b [9]
  • Bacillus subtilis [9]
  • Clostridioides difficile [9]
  • Brevibacterium linens [9]
  • Gluconobacter japonicus [9]
  • Halothiobacillus neapolitanus [9]
  • (no species) [9]
  • Hepatitis b virus [8]
  • Human immunodeficiency virus 1 [8]
  • Escherichia phage ms2 [8]
  • Pyrococcus furiosus [8]

EM Method

  • Single-particle [5993]
  • Subtomogram averaging [319]

Resolution

  • < 2Å [64]
  • ≥ 2Å and < 3Å [1458]
  • ≥ 3Å and < 4Å [2778]
  • ≥ 4Å and < 5Å [707]
  • ≥ 5Å and < 6Å [184]
  • ≥ 6Å and < 8Å [341]
  • ≥ 8Å and < 12Å [256]
  • ≥ 12Å and < 16Å [112]
  • ≥ 16Å and < 20Å [103]
  • ≥ 20Å and < 30Å [167]
  • ≥ 30Å [134]

Model molecular weight

  • 0-50 kDa [65]
  • 50-100 kDa [193]
  • 100-250 kDa [1178]
  • 250-500 kDa [1066]
  • 500-1000 kDa [680]
  • 1-2 MDa [281]
  • 2-5 MDa [292]
  • 5-10 MDa [119]
  • > 10 MDa [84]

Release Date

  • 2026 [666]
  • 2025 [1153]
  • 2024 [1029]
  • 2023 [748]
  • 2022 [699]
  • 2021 [510]
  • 2020 [508]
  • 2019 [388]
  • 2018 [240]
  • 2017 [176]
  • 2016 [141]
  • 2015 [11]
  • 2014 [9]
  • 2013 [31]
  • 2012 [1]
  • 2010 [2]

Author by name

  • Fuzik T [127]
  • Plevka P [126]
  • Wang H [124]
  • Zhou ZH [124]
  • Liu C [119]
  • Liu S [114]
  • Ward AB [105]
  • Wang Y [104]
  • Xia X [104]
  • Zhang Z [100]
  • Rubinstein JL [99]
  • Zhang X [99]
  • Liu Y [92]
  • Langousis G [90]
  • Guo H [88]
  • Hill KL [88]
  • Kassem AM [88]
  • Shimogawa MM [88]
  • Wijono A [88]
  • Wohlschlegel JA [88]
  • Li S [79]
  • Kishikawa J [78]
  • Zhang Y [78]
  • Kato T [77]
  • Karakas E [76]
  • Chen M [71]
  • Chiu W [71]
  • Gati C [71]
  • Liu J [71]
  • Han GW [70]
  • Wang L [70]
  • Glatt S [68]
  • Sazanov LA [68]
  • Li Y [67]
  • Zhao Y [66]
  • Khan S [65]
  • Kishikawa JI [63]
  • Hillen HS [62]
  • Hrebik D [62]
  • Wang J [62]
  • Lander GC [60]
  • Novacek J [60]
  • Suzuki T [60]
  • Tyson AS [60]
  • Acharya P [59]
  • Haynes BF [59]
  • Biela AP [58]
  • Gao Y [58]
  • Kwong PD [58]
  • Briggs JAG [57]
  • Kushner MG [57]
  • Lan Y [57]
  • Lan YJ [57]
  • Li H [57]
  • Tang Q [57]
  • Edwards RJ [56]
  • Lyumkis D [55]
  • Wang Q [55]
  • Greber BJ [54]
  • Mansouri K [54]
  • Saunders KO [54]
  • Zhang J [54]
  • Chen S [53]
  • Mitsuoka K [53]
  • Ranjbar M [53]
  • Bhabha G [52]
  • Chen J [52]
  • Koziej L [52]
  • Potter CS [51]
  • Hashiguchi T [50]
  • He Y [50]
  • Shi J [50]
  • Stuart DI [50]
  • Xu W [50]
  • Zhou L [50]
  • Anraku Y [49]
  • Carragher B [49]
  • Kita S [49]
  • Maenaka K [49]
  • Chen X [48]
  • Montefiori DC [48]
  • Shirouzu M [48]
  • Carrique L [47]
  • Mascola JR [47]
  • Raunser S [47]
  • Hu Y [46]
  • Richter-dennerlein R [46]
  • Yokoyama K [46]
  • Zhou T [46]
  • Li D [45]
  • Lin TY [45]
  • Cottrell CA [44]
  • Liu T [44]
  • Nakagawa T [44]
  • Nakano A [44]
  • Savva CG [44]
  • Singh J [44]
  • Vercellino I [44]
  • Zhang K [44]
  • Rawski M [43]

Author by ORCID

  • Fuzik T [125]
  • Plevka P [124]
  • Zhou ZH [114]
  • Xia X [104]
  • Shimogawa MM [88]
  • Hill KL [88]
  • Langousis G [88]
  • Wang H [88]
  • Wohlschlegel JA [88]
  • Liu S [88]
  • Rubinstein JL [78]
  • Karakas E [76]
  • Chiu W [70]
  • Kato T [65]
  • Guo H [64]
  • Ward AB [63]
  • Kishikawa JI [62]
  • Hillen HS [61]
  • Hrebik D [61]
  • Gati C [60]
  • Lander GC [58]
  • Tang Q [57]
  • Lan YJ [57]
  • Kwong PD [55]
  • Greber BJ [53]
  • Edwards RJ [52]
  • Sazanov LA [51]
  • Glatt S [49]
  • Novacek J [48]
  • Chen M [47]
  • Richter-dennerlein R [46]
  • Anraku Y [46]
  • Yokoyama K [46]
  • Briggs JAG [46]
  • Vercellino I [44]
  • Ranjbar M [44]
  • Cottrell CA [44]
  • Zhang Z [44]
  • Mansouri K [42]
  • Raunser S [42]
  • Zhou L [42]
  • Koziej L [42]
  • Biela AP [41]
  • Williamson JR [41]
  • Bhabha G [40]
  • Kita S [40]
  • Rehling P [39]
  • Finke AF [39]
  • Boshnakovska A [39]
  • Tan YZ [38]
  • Venugopal H [37]
  • Borgnia MJ [37]
  • Carrique L [36]
  • Huiskonen JT [36]
  • Lee SY [36]
  • Stokes DL [35]
  • Nakagawa T [35]
  • Steyaert J [35]
  • Gerle C [35]
  • Bottcher B [35]
  • Tilahun K [35]
  • Li H [34]
  • Pardon E [34]
  • Hu Y [34]
  • Wu M [34]
  • Lin TY [33]
  • Pinto JR [33]
  • Sempowski GD [33]
  • Shigematsu H [33]
  • Baker D [32]
  • Korostelev AA [32]
  • Shirouzu M [31]
  • Lyumkis D [31]
  • Namba K [31]
  • Ishiguro K [30]
  • Stahlberg H [30]
  • Demo G [30]
  • Pedersen BP [29]
  • Maenaka K [29]
  • Mills DJ [29]
  • Oosterheert W [29]
  • Mitsuoka K [29]
  • Barnes CO [29]
  • Hurley JH [28]
  • Fischer ES [28]
  • Zyla D [28]
  • Wang Y [28]
  • Loveland AB [28]
  • He Y [28]
  • Pantucek R [28]
  • Valentova L [28]
  • Lopez-alonso JP [28]
  • Gil-carton D [28]
  • Pfeffer S [27]
  • Xu W [27]
  • Woo CM [27]
  • Cheng Y [27]
  • Gobeil SMC [27]
  • Hauser BM [27]
  • Saphire EO [27]

Journal

  • NAT COMMUN [1244]
  • TO BE PUBLISHED [541]
  • BIORXIV [456]
  • NATURE [417]
  • PNAS [363]
  • SCIENCE [317]
  • ELIFE [311]
  • NAT STRUCT MOL BIOL [298]
  • SCI ADV [290]
  • CELL [267]
  • MOL CELL [173]
  • STRUCTURE [172]
  • NUCLEIC ACIDS RES [151]
  • COMMUN BIOL [126]
  • EMBO J [109]
  • ACTA CRYSTALLOGR D STRUCT BIOL [106]
  • CELL REP [104]
  • J BIOL CHEM [80]
  • NAT CHEM BIOL [73]
  • J VIROL [62]
  • PLOS PATHOG [57]
  • J MOL BIOL [55]
  • IUCRJ [44]
  • SCI REP [41]
  • NAT MICROBIOL [32]
  • PROTEIN SCI [29]
  • CELL HOST MICROBE [27]
  • IMMUNITY [26]
  • NAT METHODS [24]
  • CELL RES [23]
  • FEBS J [22]
  • J AM CHEM SOC [21]
  • J.MOL.CELL.CARDIOL. [21]
  • PLOS BIOL [21]
  • INT J MOL SCI [20]
  • EMBO REP [19]
  • J STRUCT BIOL [19]
  • NAT PLANTS [19]
  • J CELL BIOL [18]
  • NPJ VACCINES [18]
  • ACS NANO [16]
  • BIOCHEMISTRY [16]
  • COMMUN MATER [16]
  • SCI TRANSL MED [16]
  • GENES DEV [15]
  • J GEN VIROL [15]
  • MBIO [15]
  • ADV SCI [14]
  • J MED CHEM [14]
  • PNAS NEXUS [14]
  • CELL DISCOV [12]
  • VIRUSES [12]
  • LIFE SCI ALLIANCE [11]
  • NAT CATAL [10]
  • NAT NANOTECHNOL [10]
  • ANGEW CHEM INT ED ENGL [9]
  • INT J BIOL MACROMOL [9]
  • PLOS ONE [9]
  • RES SQ [9]
  • BIOCHEM J [8]
  • J BACTERIOL [8]
  • ACS CATAL [7]
  • ACS CHEM BIOL [7]
  • BIOCHEM BIOPHYS RES COMMUN [7]
  • MOL.BIOL.EVOL. [7]
  • NAT BIOTECHNOL [7]
  • BIOCHIM BIOPHYS ACTA BIOENERG [6]
  • BIOMOLECULES [6]
  • HEMASPHERE [6]
  • ISCIENCE [6]
  • J STRUCT BIOL X [6]
  • MACROMOL RAPID COMMUN [6]
  • MICROSCOPY [6]
  • PLANT COMMUN. [6]
  • CELL CHEM BIOL [5]
  • CURR BIOL [5]
  • J IMMUNOL. [5]
  • MICROBIOL IMMUNOL [5]
  • MSPHERE [5]
  • NAT MED [5]
  • NEURON [5]
  • PLOS NEGL TROP DIS [5]
  • RES [5]
  • SCI IMMUNOL [5]
  • SMALL [5]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [4]
  • ANTIMICROB.AGENTS CHEMOTHER. [4]
  • CELL REP MED [4]
  • CURR RES STRUCT BIOL [4]
  • ELECTROCHIM ACTA [4]
  • FRONT MOL BIOSCI [4]
  • MOL PLANT [4]
  • MOL THER [4]
  • MOL THER ADV [4]
  • PROG BIOPHYS MOL BIOL [4]
  • PROTEIN CELL [4]
  • ULTRAMICROSCOPY [4]
  • BIOPHYS J [3]
  • CANCER DISCOV [3]
  • CHEM COMMUN [3]

Software

  • CRYOSPARC [3267]
  • RELION [3262]
  • CTFFIND [621]
  • GCTF [294]
  • WARP [120]
  • FREALIGN [119]
  • CISTEM [110]
  • COOT [70]
  • UCSF CHIMERAX [67]
  • EMAN2 [54]
  • EMAN [53]
  • IMOD [52]
  • DYNAMO [50]
  • PYTOM [33]
  • XMIPP [33]
  • UCSF CHIMERA [30]
  • PHENIX [27]
  • PEET [23]
  • SPHIRE [22]
  • SPIDER [20]
  • APPION [19]
  • CTFTILT [18]
  • EMCLARITY [14]
  • CHIMERA [13]
  • IMAGIC [13]
  • IMOD, RAPTOR, PROTOMO [13]
  • CTFFIND4 [12]
  • ISOLDE [11]
  • IMOD, DYNAMO [10]
  • CTFFIND3 [8]
  • EMIRA [8]
  • FOCUS [8]
  • SCIPION [8]
  • NOVACTF [7]
  • STOPGAP [7]
  • IMOD, PRIISM/IVE [6]
  • JSPR [6]
  • MATLAB [6]
  • TOM TOOLBOX [6]
  • XMIPP, ML, TOMO [6]
  • SIMPLE [5]
  • TOM, AV3 [5]
  • TOMOCTF [5]
  • BSOFT [4]
  • CRYOLO [4]
  • EMREADY [4]
  • FREALIX [4]
  • M [4]
  • MPSA [4]
  • CTFFIND3, LABEL AND SPIDER [3]
  • E2CTF.PY [3]
  • I3 [3]
  • IMOD, XMIPP, TOMO3D [3]
  • MOTIONCORR2 [3]
  • AV3 [2]
  • CHIMERA, SEGGER [2]
  • CTFPHASEFLIP [2]
  • EM [2]
  • ETOMO, DYNAMO [2]
  • MRC, IMOD, IVE [2]
  • NAMD [2]
  • SAMUEL [2]
  • ACE, CTFFIND3 [1]
  • AMIRA [1]
  • CCP4 PACKAGE [1]
  • CHIMERA, VMD, MDFF [1]
  • CTFIND3 [1]
  • FREALIGNX [1]
  • IMOD, AV3, TOM, DYNAMO [1]
  • IMOD, PEET [1]
  • IMOD, SPIDER, BSOFT [1]
  • IMOD, TOMO3D, RELION [1]
  • IMOD, XMIPP, IMAGIC [1]
  • IMOD,RAPTOR,PROTOMO [1]
  • J3DR [1]
  • JALIGN [1]
  • PROTOMO [1]
  • PYSEG [1]
  • PYTO [1]
  • REFMAC [1]
  • REION [1]
  • RSREF [1]
  • SPARX [1]
  • SPRING [1]
  • SUBTOM [1]
  • TOM [1]

Microscope

  • FEI TITAN KRIOS [3423]
  • TFS KRIOS [1607]
  • FEI TALOS ARCTICA [413]
  • TFS GLACIOS [176]
  • FEI POLARA 300 [129]
  • JEOL CRYO ARM 300 [125]
  • FEI TECNAI F20 [63]
  • FEI/PHILIPS EM420 [46]
  • TFS TALOS [42]
  • FEI TITAN [38]
  • FEI TECNAI SPIRIT [37]
  • FEI TECNAI ARCTICA [34]
  • FEI TECNAI 12 [28]
  • FEI TECNAI 20 [26]
  • FEI TECNAI F30 [19]
  • JEOL 2200FS [17]
  • JEOL CRYO ARM 200 [17]
  • JEOL 3200FSC [14]
  • JEOL 2100 [11]
  • FEI/PHILIPS CM300FEG/T [9]
  • JEOL 3200FS [9]
  • JEOL 2200FSC [7]
  • TFS TALOS F200C [7]
  • FEI/PHILIPS CM200FEG [4]
  • TFS TALOS L120C [4]
  • FEI/PHILIPS CM120T [2]
  • JEOL KYOTO-3000SFF [2]
  • OTHER [2]
  • JEOL 1200EXII [1]
  • JEOL 1230 [1]
  • JEOL 2010F [1]
  • JEOL 2100F [1]
  • SHUIMU TOTEM 300S [1]

Electron Source

  • FIELD EMISSION GUN [6148]
  • LAB6 [131]
  • OTHER [26]
  • TUNGSTEN HAIRPIN [7]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [1543]
  • GATAN K2 SUMMIT 4K X 4K [1388]
  • GATAN K3 6K X 4K [1366]
  • FEI FALCON IV 4K X 4K [538]
  • FEI FALCON III 4K X 4K [484]
  • TFS FALCON 4I 4K X 4K [224]
  • FEI FALCON II 4K X 4K [190]
  • GATAN K2 QUANTUM 4K X 4K [186]
  • OTHER [74]
  • GATAN K3 BIOCONTINUUM 6K X 4K [61]
  • GATAN ULTRASCAN 4000 4K X 4K [52]
  • TVIPS TEMCAM-F416 4K X 4K [36]
  • FEI CETA 4K X 4K [26]
  • DIRECT ELECTRON DE-20 5K X 3K [17]
  • FEI EAGLE 2K X 2K [17]
  • FEI EAGLE 4K X 4K [17]
  • DIRECT ELECTRON DE-10 5K X 4K [13]
  • GATAN K2 BASE 4K X 4K [13]
  • GATAN MULTISCAN [10]
  • FEI FALCON I 4K X 4K [8]
  • TVIPS TEMCAM-F216 2K X 2K [8]
  • GATAN ULTRASCAN 1000 2K X 2K [7]
  • GENERIC TVIPS 4K X 4K [5]
  • TVIPS TEMCAM-F415 4K X 4K [5]
  • GATAN K2 4K X 4K [4]
  • GATAN K2 IS 4K X 4K [4]
  • GENERIC CCD [4]
  • KODAK SO-163 FILM [4]
  • DIRECT ELECTRON APOLLO 4K X 4K [3]
  • TVIPS TEMCAM-F224 2K X 2K [3]
  • DIRECT ELECTRON DE-64 8K X 8K [2]
  • GATAN ORIUS SC200 2K X 2K [1]
  • GATAN ORIUS SC600 2.7K X 2.7K [1]
  • GENERIC GATAN 2K X 2K [1]

External links

  • PDB [6283]
  • UniProt [4333]
  • PDBe-Kb [3992]
  • AlphaFold DB [3814]
  • InterPro [3239]
  • Gene Ontology [3180]
  • Pfam [2797]
  • ChEBI [2518]
  • ChEMBL [2293]
  • DrugBank [2099]
  • Complex Portal [1242]
  • EMPIAR [767]
  • SCOP2 [100]
  • CATH [74]