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final_angle_assignment_type:"PROJECTION MATCHING"

Filter By

Current Database

  • EMDB [4381]

Current status

  • REL [4381]

Sample type

  • Complex [3622]
  • Protein [2997]
  • Ligand [1649]
  • Virus [589]
  • RNA [421]
  • DNA [256]
  • Cellular component [189]
  • Other [18]
  • Cell [15]
  • Tissue [2]

Organism

  • Homo sapiens [1243]
  • Saccharomyces cerevisiae [302]
  • Escherichia coli [297]
  • Mus musculus [233]
  • Synthetic construct [230]
  • Severe acute respiratory syndrome coronavirus [180]
  • Human immunodeficiency virus 1 [143]
  • Saccharomyces cerevisiae [114]
  • Oryctolagus cuniculus [106]
  • Rattus norvegicus [82]
  • Escherichia coli [79]
  • Macaca mulatta [65]
  • Xenopus laevis [61]
  • Sus scrofa [58]
  • Bos taurus [57]
  • Mycobacterium tuberculosis [39]
  • Human immunodeficiency virus 1 [39]
  • Pseudomonas phage phi6 [35]
  • Lassa mammarenavirus [35]
  • Chlamydomonas reinhardtii [35]
  • Bacillus subtilis [33]
  • Anthocerotibacter panamensis [32]
  • Middle east respiratory syndrome-related coronavirus [29]
  • Arabidopsis thaliana [29]
  • Neurospora crassa [29]
  • Danio rerio [29]
  • Macaca fascicularis [29]
  • Lama glama [28]
  • Mycolicibacterium smegmatis [27]
  • Adeno-associated virus [27]
  • Escherichia virus t7 [26]
  • Semliki forest virus [26]
  • Enterovirus d [26]
  • Paramecium bursaria chlorella virus 1 [24]
  • Chaetomium thermophilum [24]
  • Severe acute respiratory syndrome coronavirus [24]
  • Clostridium botulinum [22]
  • Schizosaccharomyces pombe [22]
  • Zika virus [21]
  • Eastern equine encephalitis virus [20]
  • Mycolicibacterium smegmatis [20]
  • Lake sinai virus 2 [18]
  • Pseudomonas aeruginosa [17]
  • Spinacia oleracea [16]
  • Human coronavirus hku1 [16]
  • Rotavirus a [16]
  • Caenorhabditis elegans [16]
  • Mycobacterium tuberculosis [16]
  • Methanothermobacter thermautotrophicus [15]
  • Pyrococcus furiosus [15]
  • Human coronavirus hku1 [15]
  • Pseudomonas phage phikz [15]
  • Staphylococcus phage 812 [15]
  • Chikungunya virus [15]
  • Drosophila melanogaster [15]
  • Saccharolobus solfataricus [14]
  • Enterobacteria phage t4 [12]
  • Meiothermus taiwanensis [12]
  • Schizosaccharomyces pombe [12]
  • Enquatrovirus n4 [12]
  • Salmonella enterica [12]
  • Bacillus phage phi29 [11]
  • Primate t-lymphotropic virus 1 [11]
  • Lachnospiraceae bacterium nd2006 [11]
  • Norwalk virus [11]
  • Maribacter polysiphoniae [11]
  • Plasmodium falciparum [11]
  • Apis mellifera [11]
  • Chaetomium thermophilum [11]
  • (no species) [11]
  • Epstein-barr virus (strain gd1) [10]
  • Thogotovirus thogotoense [10]
  • Caulobacter vibrioides [10]
  • Severe acute respiratory syndrome coronavirus [10]
  • White spot syndrome virus [10]
  • Serratia entomophila [10]
  • Bacteroides fragilis [10]
  • Gallus gallus [10]
  • Staphylococcus aureus [10]
  • Avian infectious bursal disease virus [9]
  • Bacillus subtilis [9]
  • Thermosynechococcus elongatus [9]
  • Adeno-associated dependoparvovirus a [9]
  • Thermus thermophilus [9]
  • Escherichia coli [9]
  • Protoparvovirus carnivoran1 [9]
  • Tetrahymena thermophila [9]
  • Equine infectious anemia virus [8]
  • Human immunodeficiency virus 1 [8]
  • Pseudomonas aeruginosa [8]
  • Archaeoglobus fulgidus [8]
  • Pseudomonas virus pa223 [8]
  • Physcomitrium patens [8]
  • Oryza sativa [8]
  • Enterovirus b [8]
  • Dengue virus [7]
  • Influenza a virus [7]
  • Simian foamy virus [7]
  • Fako virus [7]
  • Zaire ebolavirus [7]

EM Method

  • Single-particle [4216]
  • Subtomogram averaging [149]
  • Helical reconstruction [16]

Resolution

  • < 2Å [14]
  • ≥ 2Å and < 3Å [729]
  • ≥ 3Å and < 4Å [1792]
  • ≥ 4Å and < 5Å [619]
  • ≥ 5Å and < 6Å [184]
  • ≥ 6Å and < 8Å [317]
  • ≥ 8Å and < 12Å [231]
  • ≥ 12Å and < 16Å [85]
  • ≥ 16Å and < 20Å [75]
  • ≥ 20Å and < 30Å [281]
  • ≥ 30Å [52]

Model molecular weight

  • 0-50 kDa [35]
  • 50-100 kDa [103]
  • 100-250 kDa [559]
  • 250-500 kDa [768]
  • 500-1000 kDa [522]
  • 1-2 MDa [282]
  • 2-5 MDa [268]
  • 5-10 MDa [96]
  • > 10 MDa [83]

Release Date

  • 2026 [115]
  • 2025 [587]
  • 2024 [405]
  • 2023 [542]
  • 2022 [387]
  • 2021 [268]
  • 2020 [517]
  • 2019 [345]
  • 2018 [472]
  • 2017 [482]
  • 2016 [261]

Author by name

  • Zhang X [334]
  • Ward AB [182]
  • Wang X [168]
  • Sun L [163]
  • Veesler D [155]
  • Liu Y [147]
  • Rubinstein JL [130]
  • Wang Y [130]
  • Liu Z [112]
  • Li Z [111]
  • Park YJ [111]
  • Chen Z [105]
  • Guo H [103]
  • Li M [103]
  • Rossmann MG [103]
  • Li X [102]
  • Huiskonen JT [101]
  • Cottrell CA [99]
  • Li J [93]
  • Mao Q [93]
  • Zhang Y [90]
  • Zhang Z [88]
  • Burton DR [86]
  • Bai XC [83]
  • Zhao X [82]
  • Chen J [81]
  • Gao N [80]
  • Liu H [80]
  • Turner HL [80]
  • Klose T [76]
  • Wang Z [76]
  • Zhu Y [76]
  • Wang CH [75]
  • Gao Y [74]
  • Sok D [74]
  • Wang L [74]
  • Kirchdoerfer RN [72]
  • Wilson IA [69]
  • Zhang W [69]
  • Chen Y [68]
  • Liu S [68]
  • Campbell EA [67]
  • Li N [67]
  • Walls AC [67]
  • Tortorici MA [65]
  • Xiang Y [65]
  • Zhang L [64]
  • Cao D [63]
  • Darst SA [63]
  • Fan C [61]
  • Liu Q [61]
  • Zhou Y [61]
  • Nogal B [60]
  • Li H [59]
  • Zhao F [59]
  • Hao A [58]
  • Li Y [58]
  • Lyumkis D [58]
  • Wang C [58]
  • Wang J [58]
  • Wu J [58]
  • Xiao H [58]
  • Zhao J [58]
  • Bianchi M [57]
  • Hangartner L [57]
  • Seattle Structural Genomics Center For Infectious Disease Ssgcid [57]
  • Zhang J [57]
  • Corti D [56]
  • Ho MC [56]
  • Lu Y [56]
  • Sewall LM [56]
  • Torres JL [56]
  • Wang Q [55]
  • Zhan W [54]
  • Baker D [52]
  • Haselbach D [52]
  • Hu Y [52]
  • Liao M [52]
  • Chen S [51]
  • Copps J [51]
  • Chen W [50]
  • Sun Y [50]
  • Zhou J [50]
  • Amunts A [49]
  • Gao P [49]
  • Wang H [49]
  • Yin Y [49]
  • Beckmann R [48]
  • Tsai MD [48]
  • He Y [47]
  • Wang P [47]
  • Baumeister W [46]
  • Dimaio F [46]
  • Zhang P [46]
  • Cao Z [45]
  • Davis JH [45]
  • Li S [45]
  • Song W [45]
  • Yang H [45]
  • Itoh Y [44]

Author by ORCID

  • Park YJ [102]
  • Sun L [91]
  • Rubinstein JL [88]
  • Veesler D [84]
  • Bai XC [82]
  • Huiskonen JT [74]
  • Gao N [74]
  • Wang CH [71]
  • Guo H [68]
  • Walls AC [65]
  • Tortorici MA [63]
  • Xiang Y [59]
  • Li N [58]
  • Torres JL [56]
  • Ho MC [52]
  • Tsai MD [48]
  • Chen Z [48]
  • Amunts A [47]
  • Corti D [46]
  • Itoh Y [44]
  • Baker D [44]
  • Klose T [43]
  • Xiao H [43]
  • Mao Y [42]
  • Zhang X [42]
  • Campbell EA [42]
  • Haselbach D [42]
  • Fraser JS [40]
  • Darst SA [40]
  • Borgnia MJ [39]
  • Cheng Y [39]
  • Lee SY [38]
  • Grigorieff N [35]
  • Chen J [35]
  • Davis JH [35]
  • Chiu W [35]
  • Tan YZ [34]
  • Li H [34]
  • Halic M [34]
  • Wang P [34]
  • Plevka P [34]
  • Saphire EO [33]
  • Mckenna R [33]
  • Bowen JE [33]
  • Chipman P [33]
  • Wilson DN [33]
  • Yang CH [32]
  • Li FW [32]
  • Li J [32]
  • Jiang HW [32]
  • Ho MY [32]
  • Naschberger A [32]
  • Ho HC [32]
  • Bryant DA [32]
  • Ko JT [32]
  • Herrmann JM [31]
  • Gui M [30]
  • Zhao X [30]
  • Dong Y [30]
  • Chu H [30]
  • Kwong PD [30]
  • Novacek J [30]
  • Virgin HW [29]
  • King NP [29]
  • Cooper CL [29]
  • Choi E [29]
  • Yuan Z [29]
  • Schiffner T [28]
  • Shao Q [28]
  • Strauss M [28]
  • Jiang W [28]
  • Lee DJ [28]
  • Pellegrino J [28]
  • Plitzko JM [28]
  • Rosen LE [28]
  • Seiple IB [28]
  • Stahlberg H [27]
  • Pallesen J [27]
  • Zhang X [27]
  • Yin Y [27]
  • Kotecha A [27]
  • Wang X [27]
  • Van Kuppeveld Fjm [26]
  • Liu Y [26]
  • Robinson CV [25]
  • Acharya P [25]
  • Gao P [25]
  • Landim-vieira M [25]
  • Des Georges A [25]
  • Fang Q [25]
  • Walz T [25]
  • Pizzuto MS [24]
  • Mietzsch M [24]
  • Lu L [24]
  • Ivanov I [24]
  • Schuller JM [24]
  • Zhou KH [23]
  • Cramer P [23]
  • Dunigan DD [23]
  • Li M [23]

Journal

  • NAT COMMUN [784]
  • NATURE [389]
  • TO BE PUBLISHED [317]
  • CELL [313]
  • PNAS [303]
  • NAT STRUCT MOL BIOL [267]
  • ELIFE [197]
  • CELL REP [188]
  • SCIENCE [169]
  • MOL CELL [154]
  • BIORXIV [143]
  • STRUCTURE [107]
  • SCI ADV [89]
  • J VIROL [79]
  • J MOL BIOL [60]
  • NUCLEIC ACIDS RES [60]
  • CELL DISCOV [54]
  • NAT MICROBIOL [52]
  • EMBO J [45]
  • PLOS PATHOG [44]
  • CELL RES [40]
  • COMMUN BIOL [33]
  • J STRUCT BIOL [32]
  • J BIOL CHEM [31]
  • EBIOMEDICINE [29]
  • NAT PLANTS [24]
  • IMMUNITY [23]
  • J AM CHEM SOC [23]
  • NAT METHODS [23]
  • PROTEIN CELL [22]
  • CELL HOST MICROBE [20]
  • J.MOL.CELL.CARDIOL. [20]
  • SCI REP [19]
  • FRONT MOL BIOSCI [16]
  • EMBO REP [15]
  • INT J MOL SCI [15]
  • NAT CHEM BIOL [13]
  • VIRUSES [13]
  • MBIO [12]
  • NEURON [12]
  • IUCRJ [11]
  • MOL PLANT [10]
  • PLOS BIOL [9]
  • PROTEIN SCI [9]
  • MOL THER METHODS CLIN DEV [8]
  • SCI TRANSL MED [8]
  • ACS NANO [7]
  • ACTA CRYSTALLOGR D STRUCT BIOL [7]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [7]
  • INT J BIOL MACROMOL [7]
  • J MOL CELL BIOL [7]
  • ANGEW CHEM INT ED ENGL [6]
  • J STRUCT BIOL X [6]
  • ACS INFECT DIS. [5]
  • BIOMACROMOLECULES [5]
  • NAT BIOTECHNOL [5]
  • NAT NANOTECHNOL [5]
  • NPJ DRUG DISCOV [5]
  • NPJ VACCINES [5]
  • CELL REP MED [4]
  • J CELL BIOL [4]
  • J MED CHEM [4]
  • NAT CARDIOVASC RES [4]
  • OPEN BIOL [4]
  • PLOS ONE [4]
  • SIGNAL TRANSDUCT TARGET THER [4]
  • ANTIVIRAL RES [3]
  • BIOCHEMISTRY [3]
  • DEV CELL [3]
  • FEBS LETT [3]
  • LIFE SCI ALLIANCE [3]
  • MOL THER [3]
  • MOL.CELL PROTEOMICS [3]
  • PLANT CELL [3]
  • PNAS NEXUS [3]
  • SCI IMMUNOL [3]
  • ACS CHEM BIOL [2]
  • ACS SYNTH BIOL [2]
  • BIOCHEM BIOPHYS RES COMMUN [2]
  • BIOCHIM BIOPHYS ACTA [2]
  • BIOMOLECULES [2]
  • BIOPHYS J [2]
  • BR.J.PHARMACOL. [2]
  • CELL CHEM BIOL [2]
  • CLIN VACCINE IMMUNOL [2]
  • HUM GENE THER [2]
  • J BACTERIOL [2]
  • J CELL SCI [2]
  • MOL MICROBIOL [2]
  • NAR MOL MED [2]
  • NAT CATAL [2]
  • NPJ VIRUSES [2]
  • RNA [2]
  • VIRUS RES [2]
  • ACS CATAL [1]
  • ACS OMEGA [1]
  • ACS PHARMACOL TRANSL SCI [1]
  • ADV SCI [1]
  • ANNU REV BIOPHYS [1]
  • AUTOPHAGY [1]

Software

  • RELION [1514]
  • CRYOSPARC [730]
  • CTFFIND [300]
  • GCTF [225]
  • CISTEM [118]
  • FREALIGN [112]
  • JSPR [104]
  • EMAN2 [82]
  • EMAN [63]
  • SPIDER [57]
  • XMIPP [40]
  • WARP [32]
  • CTFFIND3 [23]
  • IMAGIC [20]
  • J3DR [19]
  • APPION [18]
  • CTFTILT [18]
  • JALIGN [18]
  • MATLAB [18]
  • SPARX [14]
  • AUTO3DEM [13]
  • DYNAMO [13]
  • STOPGAP [13]
  • CRYODRGN [12]
  • IMOD [12]
  • BSOFT [11]
  • SUBTOM [11]
  • CTFFIND4 [10]
  • TOM TOOLBOX [9]
  • SPHIRE [8]
  • CRYOLO [7]
  • CTFIND3 [7]
  • PYTOM [7]
  • PEET [5]
  • PHENIX [5]
  • SIMPLE [5]
  • AV3 [4]
  • FREALIX [4]
  • NOVACTF [4]
  • SCIPION [4]
  • CCP4 PACKAGE [3]
  • CTFFIND3, LABEL AND SPIDER [3]
  • E2CTF.PY [3]
  • EMAN1 [3]
  • EMCLARITY [3]
  • GEFREALIGN [3]
  • SPRING [3]
  • ACE [2]
  • COOT [2]
  • EAMN [2]
  • GCTF/RELION [2]
  • SAMUEL [2]
  • ACE, CTFFIND3 [1]
  • CTFPHASEFLIP [1]
  • EMREADY [1]
  • FITCTF2.PY [1]
  • FREALIGNX [1]
  • GERELION [1]
  • JALINGN [1]
  • MOTIONCORR2 [1]
  • MPSA [1]
  • REION [1]
  • RELION2 [1]
  • SPDER [1]
  • THUNDER [1]

Microscope

  • FEI TITAN KRIOS [2819]
  • TFS KRIOS [520]
  • FEI POLARA 300 [179]
  • FEI TALOS ARCTICA [175]
  • FEI TECNAI SPIRIT [115]
  • FEI TECNAI ARCTICA [102]
  • FEI TECNAI F20 [84]
  • FEI TITAN [84]
  • TFS GLACIOS [57]
  • FEI TECNAI 12 [40]
  • JEOL 3200FSC [30]
  • FEI TECNAI F30 [29]
  • JEOL CRYO ARM 300 [22]
  • FEI TECNAI 20 [15]
  • JEOL 3200FS [14]
  • JEOL 2100F [13]
  • JEOL 2200FS [13]
  • TFS TALOS [11]
  • FEI/PHILIPS CM200FEG [10]
  • JEOL 2100 [10]
  • JEOL CRYO ARM 200 [8]
  • JEOL 2010F [5]
  • JEOL 2200FSC [5]
  • JEOL 3100FFC [4]
  • FEI/PHILIPS CM12 [3]
  • JEOL 1230 [3]
  • TFS TALOS F200C [3]
  • HITACHI EF2000 [2]
  • FEI/PHILIPS CM10 [1]
  • FEI/PHILIPS CM120T [1]
  • FEI/PHILIPS CM300FEG/ST [1]
  • HITACHI H-9500SD [1]
  • JEOL 1200 [1]
  • JEOL 1200EXII [1]
  • JEOL 1400 [1]
  • JEOL 2010 [1]
  • TFS TITAN THEMIS [1]

Electron Source

  • FIELD EMISSION GUN [4190]
  • LAB6 [167]
  • OTHER [19]
  • TUNGSTEN HAIRPIN [5]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [1586]
  • GATAN K3 BIOQUANTUM 6K X 4K [623]
  • GATAN K3 6K X 4K [615]
  • FEI FALCON II 4K X 4K [341]
  • FEI FALCON IV 4K X 4K [321]
  • FEI FALCON III 4K X 4K [235]
  • GATAN K2 QUANTUM 4K X 4K [194]
  • OTHER [79]
  • TVIPS TEMCAM-F416 4K X 4K [71]
  • GATAN ULTRASCAN 4000 4K X 4K [61]
  • DIRECT ELECTRON DE-20 5K X 3K [37]
  • FEI EAGLE 4K X 4K [37]
  • TFS FALCON 4I 4K X 4K [37]
  • GATAN K3 BIOCONTINUUM 6K X 4K [34]
  • GATAN K2 BASE 4K X 4K [27]
  • KODAK SO-163 FILM [20]
  • TVIPS TEMCAM-F415 4K X 4K [12]
  • DIRECT ELECTRON DE-64 8K X 8K [10]
  • FEI EAGLE 2K X 2K [10]
  • DIRECT ELECTRON DE-16 4K X 4K [8]
  • DIRECT ELECTRON DE-12 4K X 3K [6]
  • FEI CETA 4K X 4K [6]
  • FEI FALCON I 4K X 4K [6]
  • GATAN ULTRASCAN 1000 2K X 2K [6]
  • TVIPS TEMCAM-F224 2K X 2K [6]
  • GATAN MULTISCAN [5]
  • TVIPS TEMCAM-F816 8K X 8K [4]
  • AGFA SCIENTA FILM [2]
  • GATAN K2 IS 4K X 4K [2]
  • GATAN ORIUS SC1000 4K X 2.7K [1]

External links

  • UniProt [2759]
  • PDB [2743]
  • PDBe-Kb [2487]
  • AlphaFold DB [2172]
  • Gene Ontology [2080]
  • InterPro [2078]
  • Pfam [1859]
  • ChEBI [1562]
  • ChEMBL [1381]
  • DrugBank [1241]
  • Complex Portal [792]
  • EMPIAR [280]
  • CATH [148]
  • SCOP2 [135]
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EMD-54897
Download Map
3D View
Structure of the honeybee GABAA RDL receptor with GABA and Abamectin
Release date: Feb. 18, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9she

Laboure T, Pandey MP, Zarkadas E, Juillan-Binard C, Baud D, Neyton J, Cens T, Rousset M, Dehez F, Charnet P, Nury H

Neuron (2026) [ DOI: doi:10.1016/j.neuron.2025.12.013 Pubmed: 41653930 ]

EMD-55572
Download Map
3D View
Cryo-EM structure of ISCro4-DBL-TBL-tDNA-dDNA synaptic complex
Release date: Feb. 18, 2026
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 9t56

Pelea O, Talas A, Carrera JF, Mathis N, van de Venn L, Yeh CD, Kulcsar PI, Marquart KF, Weber Y, Gerecke SE, Harvey-Seutcheu IF, Mailander D, Pfleiderer MM, Chanez C, Corn JE, Schwank G, Jinek M

Science (2026) pp. eadz1884-eadz1884 [ Pubmed: 41642947 DOI: doi:10.1126/science.adz1884 ]

EMD-62027
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3D View
Cryo-EM structure of E coli pstSCAB in the catalytic intermediate state
Release date: Feb. 18, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9k3s

Xiao H, Li S, Qi R, Hu Y, Jiang X, Luo J, Wu J, Zhang L, Xu S, Lu D, Yang X, Chen Q, Liu S

Nat Commun (2026) [ Pubmed: 41634007 DOI: doi:10.1038/s41467-026-69153-1 ]

EMD-62031
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3D View
Cryo-EM structure of E coli pstSCAB in the pretranslocation state
Release date: Feb. 18, 2026
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9k3x

Xiao H, Li S, Qi R, Hu Y, Jiang X, Luo J, Wu J, Zhang L, Xu S, Lu D, Yang X, Chen Q, Liu S

Nat Commun (2026) [ Pubmed: 41634007 DOI: doi:10.1038/s41467-026-69153-1 ]

EMD-62032
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3D View
Cryo-EM structure of E coli pstSCAB in the resting state
Release date: Feb. 18, 2026
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9k3y

Xiao H, Li S, Qi R, Hu Y, Jiang X, Luo J, Wu J, Zhang L, Xu S, Lu D, Yang X, Chen Q, Liu S

Nat Commun (2026) [ Pubmed: 41634007 DOI: doi:10.1038/s41467-026-69153-1 ]

EMD-63387
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3D View
Structure of bacteriophage T4 neck protein gp13 and gp14 assembled in vitro in C6 symmetry
Release date: Feb. 18, 2026
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 9lu4

Han L, Mao Q, Sun L

To Be Published

EMD-63388
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3D View
Structure of bacteriophage T4 neck protein gp13 and gp14 and Hfq assembled in vitro in C6 symmetry
Release date: Feb. 18, 2026
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 9lu5

Han L, Mao Q, Sun L

To Be Published

EMD-63389
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3D View
Structure of bacteriophage T4 protal-neck protein gp20-gp13-gp14-Hfq assembled in vitro in C6 symmetry
Release date: Feb. 18, 2026
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 9lu6

Han L, Mao Q, Sun L

To Be Published

EMD-63390
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3D View
Structure of bacteriophage T4 protal-neck mismatch complex gp20-gp14-gp13 assembled in vitro in C6 symmetry
Release date: Feb. 18, 2026
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 9lu7

Han L, Mao Q, Sun L

To Be Published

EMD-71623
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3D View
In situ structure of the human mitoribosome in the P-E state
Release date: Feb. 18, 2026
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 9pg8

Wang S, Brischigliaro M, Zhang Y, Wu C, Zheng W, Barrientos A, Xiong Y

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-69156-y ]

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Current Database

  • EMDB [4381]

Current status

  • REL [4381]

Sample type

  • Complex [3622]
  • Protein [2997]
  • Ligand [1649]
  • Virus [589]
  • RNA [421]
  • DNA [256]
  • Cellular component [189]
  • Other [18]
  • Cell [15]
  • Tissue [2]

Organism

  • Homo sapiens [1243]
  • Saccharomyces cerevisiae [302]
  • Escherichia coli [297]
  • Mus musculus [233]
  • Synthetic construct [230]
  • Severe acute respiratory syndrome coronavirus [180]
  • Human immunodeficiency virus 1 [143]
  • Saccharomyces cerevisiae [114]
  • Oryctolagus cuniculus [106]
  • Rattus norvegicus [82]
  • Escherichia coli [79]
  • Macaca mulatta [65]
  • Xenopus laevis [61]
  • Sus scrofa [58]
  • Bos taurus [57]
  • Mycobacterium tuberculosis [39]
  • Human immunodeficiency virus 1 [39]
  • Pseudomonas phage phi6 [35]
  • Lassa mammarenavirus [35]
  • Chlamydomonas reinhardtii [35]
  • Bacillus subtilis [33]
  • Anthocerotibacter panamensis [32]
  • Middle east respiratory syndrome-related coronavirus [29]
  • Arabidopsis thaliana [29]
  • Neurospora crassa [29]
  • Danio rerio [29]
  • Macaca fascicularis [29]
  • Lama glama [28]
  • Mycolicibacterium smegmatis [27]
  • Adeno-associated virus [27]
  • Escherichia virus t7 [26]
  • Semliki forest virus [26]
  • Enterovirus d [26]
  • Paramecium bursaria chlorella virus 1 [24]
  • Chaetomium thermophilum [24]
  • Severe acute respiratory syndrome coronavirus [24]
  • Clostridium botulinum [22]
  • Schizosaccharomyces pombe [22]
  • Zika virus [21]
  • Eastern equine encephalitis virus [20]
  • Mycolicibacterium smegmatis [20]
  • Lake sinai virus 2 [18]
  • Pseudomonas aeruginosa [17]
  • Spinacia oleracea [16]
  • Human coronavirus hku1 [16]
  • Rotavirus a [16]
  • Caenorhabditis elegans [16]
  • Mycobacterium tuberculosis [16]
  • Methanothermobacter thermautotrophicus [15]
  • Pyrococcus furiosus [15]
  • Human coronavirus hku1 [15]
  • Pseudomonas phage phikz [15]
  • Staphylococcus phage 812 [15]
  • Chikungunya virus [15]
  • Drosophila melanogaster [15]
  • Saccharolobus solfataricus [14]
  • Enterobacteria phage t4 [12]
  • Meiothermus taiwanensis [12]
  • Schizosaccharomyces pombe [12]
  • Enquatrovirus n4 [12]
  • Salmonella enterica [12]
  • Bacillus phage phi29 [11]
  • Primate t-lymphotropic virus 1 [11]
  • Lachnospiraceae bacterium nd2006 [11]
  • Norwalk virus [11]
  • Maribacter polysiphoniae [11]
  • Plasmodium falciparum [11]
  • Apis mellifera [11]
  • Chaetomium thermophilum [11]
  • (no species) [11]
  • Epstein-barr virus (strain gd1) [10]
  • Thogotovirus thogotoense [10]
  • Caulobacter vibrioides [10]
  • Severe acute respiratory syndrome coronavirus [10]
  • White spot syndrome virus [10]
  • Serratia entomophila [10]
  • Bacteroides fragilis [10]
  • Gallus gallus [10]
  • Staphylococcus aureus [10]
  • Avian infectious bursal disease virus [9]
  • Bacillus subtilis [9]
  • Thermosynechococcus elongatus [9]
  • Adeno-associated dependoparvovirus a [9]
  • Thermus thermophilus [9]
  • Escherichia coli [9]
  • Protoparvovirus carnivoran1 [9]
  • Tetrahymena thermophila [9]
  • Equine infectious anemia virus [8]
  • Human immunodeficiency virus 1 [8]
  • Pseudomonas aeruginosa [8]
  • Archaeoglobus fulgidus [8]
  • Pseudomonas virus pa223 [8]
  • Physcomitrium patens [8]
  • Oryza sativa [8]
  • Enterovirus b [8]
  • Dengue virus [7]
  • Influenza a virus [7]
  • Simian foamy virus [7]
  • Fako virus [7]
  • Zaire ebolavirus [7]

EM Method

  • Single-particle [4216]
  • Subtomogram averaging [149]
  • Helical reconstruction [16]

Resolution

  • < 2Å [14]
  • ≥ 2Å and < 3Å [729]
  • ≥ 3Å and < 4Å [1792]
  • ≥ 4Å and < 5Å [619]
  • ≥ 5Å and < 6Å [184]
  • ≥ 6Å and < 8Å [317]
  • ≥ 8Å and < 12Å [231]
  • ≥ 12Å and < 16Å [85]
  • ≥ 16Å and < 20Å [75]
  • ≥ 20Å and < 30Å [281]
  • ≥ 30Å [52]

Model molecular weight

  • 0-50 kDa [35]
  • 50-100 kDa [103]
  • 100-250 kDa [559]
  • 250-500 kDa [768]
  • 500-1000 kDa [522]
  • 1-2 MDa [282]
  • 2-5 MDa [268]
  • 5-10 MDa [96]
  • > 10 MDa [83]

Release Date

  • 2026 [115]
  • 2025 [587]
  • 2024 [405]
  • 2023 [542]
  • 2022 [387]
  • 2021 [268]
  • 2020 [517]
  • 2019 [345]
  • 2018 [472]
  • 2017 [482]
  • 2016 [261]

Author by name

  • Zhang X [334]
  • Ward AB [182]
  • Wang X [168]
  • Sun L [163]
  • Veesler D [155]
  • Liu Y [147]
  • Rubinstein JL [130]
  • Wang Y [130]
  • Liu Z [112]
  • Li Z [111]
  • Park YJ [111]
  • Chen Z [105]
  • Guo H [103]
  • Li M [103]
  • Rossmann MG [103]
  • Li X [102]
  • Huiskonen JT [101]
  • Cottrell CA [99]
  • Li J [93]
  • Mao Q [93]
  • Zhang Y [90]
  • Zhang Z [88]
  • Burton DR [86]
  • Bai XC [83]
  • Zhao X [82]
  • Chen J [81]
  • Gao N [80]
  • Liu H [80]
  • Turner HL [80]
  • Klose T [76]
  • Wang Z [76]
  • Zhu Y [76]
  • Wang CH [75]
  • Gao Y [74]
  • Sok D [74]
  • Wang L [74]
  • Kirchdoerfer RN [72]
  • Wilson IA [69]
  • Zhang W [69]
  • Chen Y [68]
  • Liu S [68]
  • Campbell EA [67]
  • Li N [67]
  • Walls AC [67]
  • Tortorici MA [65]
  • Xiang Y [65]
  • Zhang L [64]
  • Cao D [63]
  • Darst SA [63]
  • Fan C [61]
  • Liu Q [61]
  • Zhou Y [61]
  • Nogal B [60]
  • Li H [59]
  • Zhao F [59]
  • Hao A [58]
  • Li Y [58]
  • Lyumkis D [58]
  • Wang C [58]
  • Wang J [58]
  • Wu J [58]
  • Xiao H [58]
  • Zhao J [58]
  • Bianchi M [57]
  • Hangartner L [57]
  • Seattle Structural Genomics Center For Infectious Disease Ssgcid [57]
  • Zhang J [57]
  • Corti D [56]
  • Ho MC [56]
  • Lu Y [56]
  • Sewall LM [56]
  • Torres JL [56]
  • Wang Q [55]
  • Zhan W [54]
  • Baker D [52]
  • Haselbach D [52]
  • Hu Y [52]
  • Liao M [52]
  • Chen S [51]
  • Copps J [51]
  • Chen W [50]
  • Sun Y [50]
  • Zhou J [50]
  • Amunts A [49]
  • Gao P [49]
  • Wang H [49]
  • Yin Y [49]
  • Beckmann R [48]
  • Tsai MD [48]
  • He Y [47]
  • Wang P [47]
  • Baumeister W [46]
  • Dimaio F [46]
  • Zhang P [46]
  • Cao Z [45]
  • Davis JH [45]
  • Li S [45]
  • Song W [45]
  • Yang H [45]
  • Itoh Y [44]

Author by ORCID

  • Park YJ [102]
  • Sun L [91]
  • Rubinstein JL [88]
  • Veesler D [84]
  • Bai XC [82]
  • Huiskonen JT [74]
  • Gao N [74]
  • Wang CH [71]
  • Guo H [68]
  • Walls AC [65]
  • Tortorici MA [63]
  • Xiang Y [59]
  • Li N [58]
  • Torres JL [56]
  • Ho MC [52]
  • Tsai MD [48]
  • Chen Z [48]
  • Amunts A [47]
  • Corti D [46]
  • Itoh Y [44]
  • Baker D [44]
  • Klose T [43]
  • Xiao H [43]
  • Mao Y [42]
  • Zhang X [42]
  • Campbell EA [42]
  • Haselbach D [42]
  • Fraser JS [40]
  • Darst SA [40]
  • Borgnia MJ [39]
  • Cheng Y [39]
  • Lee SY [38]
  • Grigorieff N [35]
  • Chen J [35]
  • Davis JH [35]
  • Chiu W [35]
  • Tan YZ [34]
  • Li H [34]
  • Halic M [34]
  • Wang P [34]
  • Plevka P [34]
  • Saphire EO [33]
  • Mckenna R [33]
  • Bowen JE [33]
  • Chipman P [33]
  • Wilson DN [33]
  • Yang CH [32]
  • Li FW [32]
  • Li J [32]
  • Jiang HW [32]
  • Ho MY [32]
  • Naschberger A [32]
  • Ho HC [32]
  • Bryant DA [32]
  • Ko JT [32]
  • Herrmann JM [31]
  • Gui M [30]
  • Zhao X [30]
  • Dong Y [30]
  • Chu H [30]
  • Kwong PD [30]
  • Novacek J [30]
  • Virgin HW [29]
  • King NP [29]
  • Cooper CL [29]
  • Choi E [29]
  • Yuan Z [29]
  • Schiffner T [28]
  • Shao Q [28]
  • Strauss M [28]
  • Jiang W [28]
  • Lee DJ [28]
  • Pellegrino J [28]
  • Plitzko JM [28]
  • Rosen LE [28]
  • Seiple IB [28]
  • Stahlberg H [27]
  • Pallesen J [27]
  • Zhang X [27]
  • Yin Y [27]
  • Kotecha A [27]
  • Wang X [27]
  • Van Kuppeveld Fjm [26]
  • Liu Y [26]
  • Robinson CV [25]
  • Acharya P [25]
  • Gao P [25]
  • Landim-vieira M [25]
  • Des Georges A [25]
  • Fang Q [25]
  • Walz T [25]
  • Pizzuto MS [24]
  • Mietzsch M [24]
  • Lu L [24]
  • Ivanov I [24]
  • Schuller JM [24]
  • Zhou KH [23]
  • Cramer P [23]
  • Dunigan DD [23]
  • Li M [23]

Journal

  • NAT COMMUN [784]
  • NATURE [389]
  • TO BE PUBLISHED [317]
  • CELL [313]
  • PNAS [303]
  • NAT STRUCT MOL BIOL [267]
  • ELIFE [197]
  • CELL REP [188]
  • SCIENCE [169]
  • MOL CELL [154]
  • BIORXIV [143]
  • STRUCTURE [107]
  • SCI ADV [89]
  • J VIROL [79]
  • J MOL BIOL [60]
  • NUCLEIC ACIDS RES [60]
  • CELL DISCOV [54]
  • NAT MICROBIOL [52]
  • EMBO J [45]
  • PLOS PATHOG [44]
  • CELL RES [40]
  • COMMUN BIOL [33]
  • J STRUCT BIOL [32]
  • J BIOL CHEM [31]
  • EBIOMEDICINE [29]
  • NAT PLANTS [24]
  • IMMUNITY [23]
  • J AM CHEM SOC [23]
  • NAT METHODS [23]
  • PROTEIN CELL [22]
  • CELL HOST MICROBE [20]
  • J.MOL.CELL.CARDIOL. [20]
  • SCI REP [19]
  • FRONT MOL BIOSCI [16]
  • EMBO REP [15]
  • INT J MOL SCI [15]
  • NAT CHEM BIOL [13]
  • VIRUSES [13]
  • MBIO [12]
  • NEURON [12]
  • IUCRJ [11]
  • MOL PLANT [10]
  • PLOS BIOL [9]
  • PROTEIN SCI [9]
  • MOL THER METHODS CLIN DEV [8]
  • SCI TRANSL MED [8]
  • ACS NANO [7]
  • ACTA CRYSTALLOGR D STRUCT BIOL [7]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [7]
  • INT J BIOL MACROMOL [7]
  • J MOL CELL BIOL [7]
  • ANGEW CHEM INT ED ENGL [6]
  • J STRUCT BIOL X [6]
  • ACS INFECT DIS. [5]
  • BIOMACROMOLECULES [5]
  • NAT BIOTECHNOL [5]
  • NAT NANOTECHNOL [5]
  • NPJ DRUG DISCOV [5]
  • NPJ VACCINES [5]
  • CELL REP MED [4]
  • J CELL BIOL [4]
  • J MED CHEM [4]
  • NAT CARDIOVASC RES [4]
  • OPEN BIOL [4]
  • PLOS ONE [4]
  • SIGNAL TRANSDUCT TARGET THER [4]
  • ANTIVIRAL RES [3]
  • BIOCHEMISTRY [3]
  • DEV CELL [3]
  • FEBS LETT [3]
  • LIFE SCI ALLIANCE [3]
  • MOL THER [3]
  • MOL.CELL PROTEOMICS [3]
  • PLANT CELL [3]
  • PNAS NEXUS [3]
  • SCI IMMUNOL [3]
  • ACS CHEM BIOL [2]
  • ACS SYNTH BIOL [2]
  • BIOCHEM BIOPHYS RES COMMUN [2]
  • BIOCHIM BIOPHYS ACTA [2]
  • BIOMOLECULES [2]
  • BIOPHYS J [2]
  • BR.J.PHARMACOL. [2]
  • CELL CHEM BIOL [2]
  • CLIN VACCINE IMMUNOL [2]
  • HUM GENE THER [2]
  • J BACTERIOL [2]
  • J CELL SCI [2]
  • MOL MICROBIOL [2]
  • NAR MOL MED [2]
  • NAT CATAL [2]
  • NPJ VIRUSES [2]
  • RNA [2]
  • VIRUS RES [2]
  • ACS CATAL [1]
  • ACS OMEGA [1]
  • ACS PHARMACOL TRANSL SCI [1]
  • ADV SCI [1]
  • ANNU REV BIOPHYS [1]
  • AUTOPHAGY [1]

Software

  • RELION [1514]
  • CRYOSPARC [730]
  • CTFFIND [300]
  • GCTF [225]
  • CISTEM [118]
  • FREALIGN [112]
  • JSPR [104]
  • EMAN2 [82]
  • EMAN [63]
  • SPIDER [57]
  • XMIPP [40]
  • WARP [32]
  • CTFFIND3 [23]
  • IMAGIC [20]
  • J3DR [19]
  • APPION [18]
  • CTFTILT [18]
  • JALIGN [18]
  • MATLAB [18]
  • SPARX [14]
  • AUTO3DEM [13]
  • DYNAMO [13]
  • STOPGAP [13]
  • CRYODRGN [12]
  • IMOD [12]
  • BSOFT [11]
  • SUBTOM [11]
  • CTFFIND4 [10]
  • TOM TOOLBOX [9]
  • SPHIRE [8]
  • CRYOLO [7]
  • CTFIND3 [7]
  • PYTOM [7]
  • PEET [5]
  • PHENIX [5]
  • SIMPLE [5]
  • AV3 [4]
  • FREALIX [4]
  • NOVACTF [4]
  • SCIPION [4]
  • CCP4 PACKAGE [3]
  • CTFFIND3, LABEL AND SPIDER [3]
  • E2CTF.PY [3]
  • EMAN1 [3]
  • EMCLARITY [3]
  • GEFREALIGN [3]
  • SPRING [3]
  • ACE [2]
  • COOT [2]
  • EAMN [2]
  • GCTF/RELION [2]
  • SAMUEL [2]
  • ACE, CTFFIND3 [1]
  • CTFPHASEFLIP [1]
  • EMREADY [1]
  • FITCTF2.PY [1]
  • FREALIGNX [1]
  • GERELION [1]
  • JALINGN [1]
  • MOTIONCORR2 [1]
  • MPSA [1]
  • REION [1]
  • RELION2 [1]
  • SPDER [1]
  • THUNDER [1]

Microscope

  • FEI TITAN KRIOS [2819]
  • TFS KRIOS [520]
  • FEI POLARA 300 [179]
  • FEI TALOS ARCTICA [175]
  • FEI TECNAI SPIRIT [115]
  • FEI TECNAI ARCTICA [102]
  • FEI TECNAI F20 [84]
  • FEI TITAN [84]
  • TFS GLACIOS [57]
  • FEI TECNAI 12 [40]
  • JEOL 3200FSC [30]
  • FEI TECNAI F30 [29]
  • JEOL CRYO ARM 300 [22]
  • FEI TECNAI 20 [15]
  • JEOL 3200FS [14]
  • JEOL 2100F [13]
  • JEOL 2200FS [13]
  • TFS TALOS [11]
  • FEI/PHILIPS CM200FEG [10]
  • JEOL 2100 [10]
  • JEOL CRYO ARM 200 [8]
  • JEOL 2010F [5]
  • JEOL 2200FSC [5]
  • JEOL 3100FFC [4]
  • FEI/PHILIPS CM12 [3]
  • JEOL 1230 [3]
  • TFS TALOS F200C [3]
  • HITACHI EF2000 [2]
  • FEI/PHILIPS CM10 [1]
  • FEI/PHILIPS CM120T [1]
  • FEI/PHILIPS CM300FEG/ST [1]
  • HITACHI H-9500SD [1]
  • JEOL 1200 [1]
  • JEOL 1200EXII [1]
  • JEOL 1400 [1]
  • JEOL 2010 [1]
  • TFS TITAN THEMIS [1]

Electron Source

  • FIELD EMISSION GUN [4190]
  • LAB6 [167]
  • OTHER [19]
  • TUNGSTEN HAIRPIN [5]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [1586]
  • GATAN K3 BIOQUANTUM 6K X 4K [623]
  • GATAN K3 6K X 4K [615]
  • FEI FALCON II 4K X 4K [341]
  • FEI FALCON IV 4K X 4K [321]
  • FEI FALCON III 4K X 4K [235]
  • GATAN K2 QUANTUM 4K X 4K [194]
  • OTHER [79]
  • TVIPS TEMCAM-F416 4K X 4K [71]
  • GATAN ULTRASCAN 4000 4K X 4K [61]
  • DIRECT ELECTRON DE-20 5K X 3K [37]
  • FEI EAGLE 4K X 4K [37]
  • TFS FALCON 4I 4K X 4K [37]
  • GATAN K3 BIOCONTINUUM 6K X 4K [34]
  • GATAN K2 BASE 4K X 4K [27]
  • KODAK SO-163 FILM [20]
  • TVIPS TEMCAM-F415 4K X 4K [12]
  • DIRECT ELECTRON DE-64 8K X 8K [10]
  • FEI EAGLE 2K X 2K [10]
  • DIRECT ELECTRON DE-16 4K X 4K [8]
  • DIRECT ELECTRON DE-12 4K X 3K [6]
  • FEI CETA 4K X 4K [6]
  • FEI FALCON I 4K X 4K [6]
  • GATAN ULTRASCAN 1000 2K X 2K [6]
  • TVIPS TEMCAM-F224 2K X 2K [6]
  • GATAN MULTISCAN [5]
  • TVIPS TEMCAM-F816 8K X 8K [4]
  • AGFA SCIENTA FILM [2]
  • GATAN K2 IS 4K X 4K [2]
  • GATAN ORIUS SC1000 4K X 2.7K [1]

External links

  • UniProt [2759]
  • PDB [2743]
  • PDBe-Kb [2487]
  • AlphaFold DB [2172]
  • Gene Ontology [2080]
  • InterPro [2078]
  • Pfam [1859]
  • ChEBI [1562]
  • ChEMBL [1381]
  • DrugBank [1241]
  • Complex Portal [792]
  • EMPIAR [280]
  • CATH [148]
  • SCOP2 [135]