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Current Database

  • EMDB [126]

Current status

  • REL [126]

Sample type

  • Virus [120]
  • Protein [80]
  • Ligand [14]
  • Complex [12]
  • Cellular component [1]

Organism

  • Enterovirus d [27]
  • Paramecium bursaria chlorella virus 1 [24]
  • Eastern equine encephalitis virus [14]
  • Homo sapiens [12]
  • Fako virus [7]
  • Mus musculus [4]
  • Rhinovirus b [4]
  • Pseudoalteromonas phage tw1 [4]
  • Vibrio phage xm1 [4]
  • Recovirus a [4]
  • Getah virus [4]
  • Zika virus [3]
  • Scylla serrata reovirus sz-2007 [3]
  • Zika virus [3]
  • Omono river virus [3]
  • Enterobacteria phage t4 [2]
  • Bacillus virus g [2]
  • Faustovirus [2]
  • Enterovirus a [2]
  • Eastern equine encephalitis virus [2]
  • Mayaro virus [2]
  • Rhinovirus c [2]
  • Mayaro virus [2]
  • Usutu virus [2]
  • Salmonella phage p22 [1]
  • Shigella phage sf6 [1]
  • Ross river virus [1]
  • Enterovirus b [1]
  • Wenzhou tombus-like virus 18 [1]
  • Thermotoga maritima [1]
  • Chikungunya virus [1]
  • Staphylococcus virus 80alpha [1]

EM Method

  • Single-particle [126]

Resolution

  • ≥ 2Å and < 3Å [21]
  • ≥ 3Å and < 4Å [61]
  • ≥ 4Å and < 5Å [8]
  • ≥ 5Å and < 6Å [10]
  • ≥ 6Å and < 8Å [7]
  • ≥ 8Å and < 12Å [9]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [4]

Model molecular weight

  • 50-100 kDa [1]
  • 250-500 kDa [3]
  • 500-1000 kDa [3]
  • 1-2 MDa [1]
  • 2-5 MDa [2]
  • 5-10 MDa [27]
  • > 10 MDa [31]

Release Date

  • 2025 [1]
  • 2024 [3]
  • 2023 [28]
  • 2022 [14]
  • 2021 [10]
  • 2020 [12]
  • 2019 [15]
  • 2018 [25]
  • 2017 [11]
  • 2016 [7]

Author by name

  • Rossmann MG [90]
  • Klose T [69]
  • Liu Y [55]
  • Jiang W [36]
  • Buda G [32]
  • Kuhn RJ [30]
  • Shao Q [27]
  • Fang Q [26]
  • Van Kuppeveld Fjm [25]
  • Van Vliet Alw [25]
  • Agarkova IV [24]
  • Dunigan DD [24]
  • Guo M [24]
  • Noel EA [24]
  • Van Etten Jl [24]
  • Wang A [24]
  • Xie L [24]
  • Zhao X [24]
  • Sheng J [19]
  • Sun C [14]
  • Diamond MS [13]
  • Crowe Jr Je [11]
  • Fokine A [11]
  • Kim AS [11]
  • Jia X [10]
  • Kaelber JT [10]
  • Klimstra WB [10]
  • Zhang Q [10]
  • Chen CL [9]
  • Gao Y [9]
  • Wang Z [9]
  • Chen C-L [8]
  • Chiu W [8]
  • Li K [8]
  • Miller AS [8]
  • Auguste AJ [7]
  • Weaver SC [7]
  • Baggen J [6]
  • Bombardi R [6]
  • Kose N [6]
  • Lyoo H [6]
  • Meijer A [6]
  • Overduin P [6]
  • Roberts RW [6]
  • Sirohi D [6]
  • Thibaut HJ [6]
  • Wahedi M [6]
  • Williamson LE [6]
  • De Bruin Jw [6]
  • Miller A [5]
  • Bailey K [4]
  • Bandyopadhyay A [4]
  • Bochkov YA [4]
  • Carnahan RH [4]
  • Chen Z [4]
  • Cho BC [4]
  • Dharshan De Silva A [4]
  • Dong Y [4]
  • Fox JM [4]
  • Guo X [4]
  • Hardies SC [4]
  • He J [4]
  • Huang P [4]
  • Julander JG [4]
  • Liu S [4]
  • Long F [4]
  • Luo ZH [4]
  • Powell LA [4]
  • Smith TJ [4]
  • Song D [4]
  • Tennekoon RN [4]
  • Vago FS [4]
  • Weng S [4]
  • Xu Z [4]
  • Baker ML [3]
  • Hasan SS [3]
  • Jiang XJ [3]
  • Li Y [3]
  • Liu Z [3]
  • Sevvana M [3]
  • Sun L [3]
  • Tan Q [3]
  • Xu H [3]
  • Xu X [3]
  • Zhang H [3]
  • Zhang X [3]
  • Zhou H [3]
  • Benamar S [2]
  • Chen F [2]
  • Colson P [2]
  • Cong Y [2]
  • Fan C [2]
  • Fernandez E [2]
  • Fu J [2]
  • Georgiev IS [2]
  • Gern JE [2]
  • Gonzalez B [2]
  • Hill MG [2]
  • Hollerbach A [2]
  • Huang Z [2]

Author by ORCID

  • Klose T [65]
  • Jiang W [29]
  • Shao Q [27]
  • Fang Q [26]
  • Van Kuppeveld Fjm [25]
  • Liu Y [25]
  • Dunigan DD [24]
  • Van Etten Jl [24]
  • Guo M [24]
  • Liu Y [24]
  • Noel EA [24]
  • Wang A [24]
  • Zhao X [24]
  • Agarkova IV [24]
  • Kuhn RJ [17]
  • Kim AS [11]
  • Chen CL [9]
  • Kaelber JT [8]
  • Crowe Jr Je [7]
  • Thibaut HJ [6]
  • Lyoo H [6]
  • Baggen J [6]
  • Chiu W [6]
  • Jia X [6]
  • Sirohi D [5]
  • Auguste AJ [5]
  • Bandyopadhyay A [4]
  • Sun C [4]
  • Bochkov YA [4]
  • Gao Y [3]
  • Zhang Q [3]
  • Bailey K [3]
  • Julander JG [3]
  • Tan Q [3]
  • Zhang X [3]
  • Williamson LE [3]
  • Liu Z [3]
  • Zhou H [3]
  • Sevvana M [3]
  • Colson P [2]
  • La Scola B [2]
  • Ku Z [2]
  • Yan R [2]
  • Huang Z [2]
  • Ye X [2]
  • Vogt MR [2]
  • Bombardi R [2]
  • Khare B [2]
  • Weintraub ST [2]
  • Fu J [2]
  • Sun Y [2]
  • Setliff I [2]
  • Zhu J [1]
  • Dokland T [1]
  • Padilla-sanchez V [1]
  • Stagg SM [1]
  • Adams PD [1]
  • Crowe JE [1]
  • Kizziah JL [1]
  • Pierson TC [1]
  • Lai YC [1]
  • Hryc CF [1]
  • Parren M [1]
  • Dearborn AD [1]
  • Schmid MF [1]
  • Beutler N [1]
  • Klenow L [1]
  • Chen C-L [1]
  • Wang Z [1]

Journal

  • PNAS [46]
  • NAT COMMUN [32]
  • STRUCTURE [11]
  • TO BE PUBLISHED [7]
  • PLOS PATHOG [6]
  • BIOMOLECULES [4]
  • BIORXIV [4]
  • CELL HOST MICROBE [4]
  • J VIROL [3]
  • J MOL BIOL [2]
  • SCI IMMUNOL [2]
  • SCIENCE [2]
  • VIRUSES [2]
  • NAT STRUCT MOL BIOL [1]
  • NOT PUBLISHED [1]

Software

  • JSPR [125]
  • RELION [72]
  • CTFFIND [11]
  • CRYOSPARC [5]
  • CISTEM [3]
  • J3DR [2]
  • CTFIT [1]
  • EMAN, JSPR [1]
  • FITCTF2.PY [1]
  • GCTF [1]
  • MPSA [1]

Microscope

  • FEI TITAN KRIOS [114]
  • JEOL 3200FSC [8]
  • TFS TALOS F200C [3]
  • JEOL 2010F [1]

Electron Source

  • FIELD EMISSION GUN [126]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [77]
  • DIRECT ELECTRON DE-20 5K X 3K [8]
  • GATAN K3 BIOQUANTUM 6K X 4K [7]
  • DIRECT ELECTRON DE-16 4K X 4K [5]
  • FEI FALCON II 4K X 4K [5]
  • GATAN K2 BASE 4K X 4K [4]
  • GATAN K3 6K X 4K [4]
  • GATAN ULTRASCAN 4000 4K X 4K [4]
  • FEI FALCON III 4K X 4K [3]
  • FEI FALCON IV 4K X 4K [3]
  • OTHER [3]
  • GATAN K2 QUANTUM 4K X 4K [2]
  • GATAN ULTRASCAN 1000 2K X 2K [1]

External links

  • PDB [126]
  • UniProt [60]
  • PDBe-Kb [51]
  • InterPro [47]
  • Gene Ontology [45]
  • AlphaFold DB [24]
  • CATH [22]
  • ChEBI [14]
  • ChEMBL [14]
  • DrugBank [9]
  • EMPIAR [8]
  • Pfam [6]
  • SCOP2 [4]
  • Complex Portal [2]
Sort by: Download
Showing 1 - 10 of 126. Page 1 of 13
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EMD-43980
Download Map
3D View
Cryo-EM structure of SINV/EEEV in complex with a potently neutralizing human antibody IgG EEEV-373
CryoEM
Release date: June 11, 2025
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 9ay1
Q-score: 0.171

Bandyopadhyay A, Williamson LE, Sirohi D, Bailey K, Gilliland Jr T, Klose T, Buda G, Trivette A, Sun C, Julander JG, Klimstra WB, Crowe Jr JE, Kuhn RJ

Nat Commun (2025) 16 pp. 7716-7716 [ DOI: doi:10.1038/s41467-025-60505-x Pubmed: 40830099 ]

EMD-43222
Download Map
3D View
Raw data
EMPIAR-12021
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 5-12-18
CryoEM
Release date: Feb. 7, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8vgr
Q-score: 0.445

Sun C, Huang P, Xu X, Vago FS, Li K, Klose T, Jiang XJ, Jiang W

Biomolecules (2024) 14 [ Pubmed: 38254719 DOI: doi:10.3390/biom14010119 ]

EMD-43292
Download Map
3D View
Raw data
EMPIAR-12023
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18, DTT-treated
CryoEM
Release date: Feb. 7, 2024
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 8vjr
Q-score: 0.559

Sun C, Huang P, Xu X, Vago FS, Li K, Klose T, Jiang XJ, Jiang W

Biomolecules (2024) 14 [ Pubmed: 38254719 DOI: doi:10.3390/biom14010119 ]

EMD-43293
Download Map
3D View
Raw data
EMPIAR-12024
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18 without DTT treatment
CryoEM
Release date: Feb. 7, 2024
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 8vjs
Q-score: 0.506

Sun C, Huang P, Xu X, Vago FS, Li K, Klose T, Jiang XJ, Jiang W

Biomolecules (2024) 14 [ Pubmed: 38254719 DOI: doi:10.3390/biom14010119 ]

EMD-35326
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3D View
Cryo-EM reconstruction of PBCV-1 capsid block 1
CryoEM
Release date: June 21, 2023
Resolution: 3.9 Å
EM Method: Single-particle

Shao Q, Agarkova IV, Noel EA, Dunigan DD, Liu Y, Wang A, Guo M, Xie L, Zhao X, Rossmann MG, Van Etten JL, Klose T, Fang Q

Nat Commun (2022) 13 pp. 6476-6476 [ DOI: doi:10.1038/s41467-022-34218-4 Pubmed: 36309542 ]

EMD-35490
Download Map
3D View
Cryo-EM reconstruction of PBCV-1 capsid block 2
CryoEM
Release date: June 21, 2023
Resolution: 3.9 Å
EM Method: Single-particle

Shao Q, Agarkova IV, Noel EA, Dunigan DD, Liu Y, Wang A, Guo M, Xie L, Zhao X, Rossmann MG, Van Etten JL, Klose T, Fang Q

Nat Commun (2022) 13 pp. 6476-6476 [ DOI: doi:10.1038/s41467-022-34218-4 Pubmed: 36309542 ]

EMD-35585
Download Map
3D View
Cryo-EM reconstruction of PBCV-1 capsid block 3
CryoEM
Release date: June 21, 2023
Resolution: 3.9 Å
EM Method: Single-particle

Shao Q, Agarkova IV, Noel EA, Dunigan DD, Liu Y, Wang A, Guo M, Xie L, Zhao X, Rossmann MG, Van Etten JL, Klose T, Fang Q

Nat Commun (2022) 13 pp. 6476-6476 [ DOI: doi:10.1038/s41467-022-34218-4 Pubmed: 36309542 ]

EMD-35586
Download Map
3D View
Cryo-EM reconstruction of PBCV-1 capsid block 4
CryoEM
Release date: June 21, 2023
Resolution: 3.8 Å
EM Method: Single-particle

Shao Q, Agarkova IV, Noel EA, Dunigan DD, Liu Y, Wang A, Guo M, Xie L, Zhao X, Rossmann MG, Van Etten JL, Klose T, Fang Q

Nat Commun (2022) 13 pp. 6476-6476 [ DOI: doi:10.1038/s41467-022-34218-4 Pubmed: 36309542 ]

EMD-35589
Download Map
3D View
Cryo-EM reconstruction of PBCV-1 capsid block 5
CryoEM
Release date: June 21, 2023
Resolution: 3.9 Å
EM Method: Single-particle

Shao Q, Agarkova IV, Noel EA, Dunigan DD, Liu Y, Wang A, Guo M, Xie L, Zhao X, Rossmann MG, Van Etten JL, Klose T, Fang Q

Nat Commun (2022) 13 pp. 6476- [ DOI: doi:10.1038/s41467-022-34218-4 Pubmed: 36309542 ]

EMD-35593
Download Map
3D View
Cryo-EM reconstruction of PBCV-1 capsid block 6
CryoEM
Release date: June 21, 2023
Resolution: 3.9 Å
EM Method: Single-particle

Shao Q, Agarkova IV, Noel EA, Dunigan DD, Liu Y, Wang A, Guo M, Xie L, Zhao X, Rossmann MG, Van Etten JL, Klose T, Fang Q

Nat Commun (2022) 13 pp. 6476-6476 [ DOI: doi:10.1038/s41467-022-34218-4 Pubmed: 36309542 ]

Sort by: Download
Showing 1 - 10 of 126. Page 1 of 13
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Filter By

Current Database

  • EMDB [126]

Current status

  • REL [126]

Sample type

  • Virus [120]
  • Protein [80]
  • Ligand [14]
  • Complex [12]
  • Cellular component [1]

Organism

  • Enterovirus d [27]
  • Paramecium bursaria chlorella virus 1 [24]
  • Eastern equine encephalitis virus [14]
  • Homo sapiens [12]
  • Fako virus [7]
  • Mus musculus [4]
  • Rhinovirus b [4]
  • Pseudoalteromonas phage tw1 [4]
  • Vibrio phage xm1 [4]
  • Recovirus a [4]
  • Getah virus [4]
  • Zika virus [3]
  • Scylla serrata reovirus sz-2007 [3]
  • Zika virus [3]
  • Omono river virus [3]
  • Enterobacteria phage t4 [2]
  • Bacillus virus g [2]
  • Faustovirus [2]
  • Enterovirus a [2]
  • Eastern equine encephalitis virus [2]
  • Mayaro virus [2]
  • Rhinovirus c [2]
  • Mayaro virus [2]
  • Usutu virus [2]
  • Salmonella phage p22 [1]
  • Shigella phage sf6 [1]
  • Ross river virus [1]
  • Enterovirus b [1]
  • Wenzhou tombus-like virus 18 [1]
  • Thermotoga maritima [1]
  • Chikungunya virus [1]
  • Staphylococcus virus 80alpha [1]

EM Method

  • Single-particle [126]

Resolution

  • ≥ 2Å and < 3Å [21]
  • ≥ 3Å and < 4Å [61]
  • ≥ 4Å and < 5Å [8]
  • ≥ 5Å and < 6Å [10]
  • ≥ 6Å and < 8Å [7]
  • ≥ 8Å and < 12Å [9]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [4]

Model molecular weight

  • 50-100 kDa [1]
  • 250-500 kDa [3]
  • 500-1000 kDa [3]
  • 1-2 MDa [1]
  • 2-5 MDa [2]
  • 5-10 MDa [27]
  • > 10 MDa [31]

Release Date

  • 2025 [1]
  • 2024 [3]
  • 2023 [28]
  • 2022 [14]
  • 2021 [10]
  • 2020 [12]
  • 2019 [15]
  • 2018 [25]
  • 2017 [11]
  • 2016 [7]

Author by name

  • Rossmann MG [90]
  • Klose T [69]
  • Liu Y [55]
  • Jiang W [36]
  • Buda G [32]
  • Kuhn RJ [30]
  • Shao Q [27]
  • Fang Q [26]
  • Van Kuppeveld Fjm [25]
  • Van Vliet Alw [25]
  • Agarkova IV [24]
  • Dunigan DD [24]
  • Guo M [24]
  • Noel EA [24]
  • Van Etten Jl [24]
  • Wang A [24]
  • Xie L [24]
  • Zhao X [24]
  • Sheng J [19]
  • Sun C [14]
  • Diamond MS [13]
  • Crowe Jr Je [11]
  • Fokine A [11]
  • Kim AS [11]
  • Jia X [10]
  • Kaelber JT [10]
  • Klimstra WB [10]
  • Zhang Q [10]
  • Chen CL [9]
  • Gao Y [9]
  • Wang Z [9]
  • Chen C-L [8]
  • Chiu W [8]
  • Li K [8]
  • Miller AS [8]
  • Auguste AJ [7]
  • Weaver SC [7]
  • Baggen J [6]
  • Bombardi R [6]
  • Kose N [6]
  • Lyoo H [6]
  • Meijer A [6]
  • Overduin P [6]
  • Roberts RW [6]
  • Sirohi D [6]
  • Thibaut HJ [6]
  • Wahedi M [6]
  • Williamson LE [6]
  • De Bruin Jw [6]
  • Miller A [5]
  • Bailey K [4]
  • Bandyopadhyay A [4]
  • Bochkov YA [4]
  • Carnahan RH [4]
  • Chen Z [4]
  • Cho BC [4]
  • Dharshan De Silva A [4]
  • Dong Y [4]
  • Fox JM [4]
  • Guo X [4]
  • Hardies SC [4]
  • He J [4]
  • Huang P [4]
  • Julander JG [4]
  • Liu S [4]
  • Long F [4]
  • Luo ZH [4]
  • Powell LA [4]
  • Smith TJ [4]
  • Song D [4]
  • Tennekoon RN [4]
  • Vago FS [4]
  • Weng S [4]
  • Xu Z [4]
  • Baker ML [3]
  • Hasan SS [3]
  • Jiang XJ [3]
  • Li Y [3]
  • Liu Z [3]
  • Sevvana M [3]
  • Sun L [3]
  • Tan Q [3]
  • Xu H [3]
  • Xu X [3]
  • Zhang H [3]
  • Zhang X [3]
  • Zhou H [3]
  • Benamar S [2]
  • Chen F [2]
  • Colson P [2]
  • Cong Y [2]
  • Fan C [2]
  • Fernandez E [2]
  • Fu J [2]
  • Georgiev IS [2]
  • Gern JE [2]
  • Gonzalez B [2]
  • Hill MG [2]
  • Hollerbach A [2]
  • Huang Z [2]

Author by ORCID

  • Klose T [65]
  • Jiang W [29]
  • Shao Q [27]
  • Fang Q [26]
  • Van Kuppeveld Fjm [25]
  • Liu Y [25]
  • Dunigan DD [24]
  • Van Etten Jl [24]
  • Guo M [24]
  • Liu Y [24]
  • Noel EA [24]
  • Wang A [24]
  • Zhao X [24]
  • Agarkova IV [24]
  • Kuhn RJ [17]
  • Kim AS [11]
  • Chen CL [9]
  • Kaelber JT [8]
  • Crowe Jr Je [7]
  • Thibaut HJ [6]
  • Lyoo H [6]
  • Baggen J [6]
  • Chiu W [6]
  • Jia X [6]
  • Sirohi D [5]
  • Auguste AJ [5]
  • Bandyopadhyay A [4]
  • Sun C [4]
  • Bochkov YA [4]
  • Gao Y [3]
  • Zhang Q [3]
  • Bailey K [3]
  • Julander JG [3]
  • Tan Q [3]
  • Zhang X [3]
  • Williamson LE [3]
  • Liu Z [3]
  • Zhou H [3]
  • Sevvana M [3]
  • Colson P [2]
  • La Scola B [2]
  • Ku Z [2]
  • Yan R [2]
  • Huang Z [2]
  • Ye X [2]
  • Vogt MR [2]
  • Bombardi R [2]
  • Khare B [2]
  • Weintraub ST [2]
  • Fu J [2]
  • Sun Y [2]
  • Setliff I [2]
  • Zhu J [1]
  • Dokland T [1]
  • Padilla-sanchez V [1]
  • Stagg SM [1]
  • Adams PD [1]
  • Crowe JE [1]
  • Kizziah JL [1]
  • Pierson TC [1]
  • Lai YC [1]
  • Hryc CF [1]
  • Parren M [1]
  • Dearborn AD [1]
  • Schmid MF [1]
  • Beutler N [1]
  • Klenow L [1]
  • Chen C-L [1]
  • Wang Z [1]

Journal

  • PNAS [46]
  • NAT COMMUN [32]
  • STRUCTURE [11]
  • TO BE PUBLISHED [7]
  • PLOS PATHOG [6]
  • BIOMOLECULES [4]
  • BIORXIV [4]
  • CELL HOST MICROBE [4]
  • J VIROL [3]
  • J MOL BIOL [2]
  • SCI IMMUNOL [2]
  • SCIENCE [2]
  • VIRUSES [2]
  • NAT STRUCT MOL BIOL [1]
  • NOT PUBLISHED [1]

Software

  • JSPR [125]
  • RELION [72]
  • CTFFIND [11]
  • CRYOSPARC [5]
  • CISTEM [3]
  • J3DR [2]
  • CTFIT [1]
  • EMAN, JSPR [1]
  • FITCTF2.PY [1]
  • GCTF [1]
  • MPSA [1]

Microscope

  • FEI TITAN KRIOS [114]
  • JEOL 3200FSC [8]
  • TFS TALOS F200C [3]
  • JEOL 2010F [1]

Electron Source

  • FIELD EMISSION GUN [126]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [77]
  • DIRECT ELECTRON DE-20 5K X 3K [8]
  • GATAN K3 BIOQUANTUM 6K X 4K [7]
  • DIRECT ELECTRON DE-16 4K X 4K [5]
  • FEI FALCON II 4K X 4K [5]
  • GATAN K2 BASE 4K X 4K [4]
  • GATAN K3 6K X 4K [4]
  • GATAN ULTRASCAN 4000 4K X 4K [4]
  • FEI FALCON III 4K X 4K [3]
  • FEI FALCON IV 4K X 4K [3]
  • OTHER [3]
  • GATAN K2 QUANTUM 4K X 4K [2]
  • GATAN ULTRASCAN 1000 2K X 2K [1]

External links

  • PDB [126]
  • UniProt [60]
  • PDBe-Kb [51]
  • InterPro [47]
  • Gene Ontology [45]
  • AlphaFold DB [24]
  • CATH [22]
  • ChEBI [14]
  • ChEMBL [14]
  • DrugBank [9]
  • EMPIAR [8]
  • Pfam [6]
  • SCOP2 [4]
  • Complex Portal [2]