Electron Microscopy Data Bank

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final_angle_assignment_software:"Dynamo"

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Current Database

Current status

Sample type

Organism

Rous sarcoma virus [25]
Homo sapiens [14]
Severe acute respiratory syndrome coronavirus [13]
Rift valley fever phlebovirus [10]
Oryctolagus cuniculus [10]
Mus musculus [8]
Chikungunya virus [7]
Cryptosporidium parvum [7]
Saccharomyces cerevisiae [7]
Toxoplasma gondii [6]
Xenopus laevis [6]
Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [5]
Chaetomium thermophilum [4]
Enterovirus c [3]
Plasmodium falciparum [3]
Yersinia enterocolitica [3]
Vaccinia virus [3]
Sus scrofa [3]
Vaccinia virus [2]
Murine coronavirus [2]
Chaetomium thermophilum [2]
Adeno-associated virus [2]
Encephalitozoon intestinalis [2]
Vairimorpha necatrix [2]
Caenorhabditis elegans [2]
Salmonella enterica [2]
Ovis aries [2]
(no species) [1]
Human respirovirus 3 [1]
Alphapleolipovirus hrpv6 [1]
Bacillus anthracis [1]
Tula orthohantavirus [1]
Candidatus amoebophilus asiaticus [1]
Algoriphagus machipongonensis [1]
Pseudoalteromonas luteoviolacea [1]
Saccharomyces cerevisiae [1]
Escherichia coli [1]
(no species) [1]
Shigella flexneri [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Li S [30]
Schur FKM [26]
Thader A [26]
Dick RA [25]
Feathers JR [25]
Johnson MC [25]
Klanschnig M [25]
Kudryashev M [25]
Nikulin N [25]
Obr M [25]
Ricana CL [25]
Vogt VM [25]
Chang Y-W [16]
Chang YW [16]
Chen WD [16]
Guerin A [16]
Mageswaran SK [16]
Martinez M [16]
Carlson LA [13]
Chavin S [13]
Shi Y [13]
Soldati-favre D [13]
Striepen B [13]
Thompson CP [13]
Huiskonen JT [12]
Song Y [12]
Harlos K [11]
Lei J [11]
Li M [11]
Bowden TA [10]
Chen W [10]
Halldorsson S [10]
Sai L [10]
Zhang W [10]
Zhang Z [10]
Sharp TH [9]
Zhang Y [9]
Pilhofer M [8]
Xu J [8]
Hutchings J [7]
Laurent T [7]
Miller EA [7]
Zanetti G [7]
Brown NR [6]
Cheung ACM [6]
Daumke O [6]
Huang G [6]
Koster AJ [6]
Liu M [6]
Noel JK [6]
Stancheva VG [6]
Tao Q [6]
Wang K [6]
Wang Q [6]
Yan C [6]
Yang G [6]
Zeng C [6]
Zhang YQ [6]
Zhou Q [6]
Zhu X [6]
Chen Y [5]
Cheng L [5]
Chiaruttin N [5]
Chiaruttini N [5]
Crispin M [5]
Dietrich L [5]
Dijkstra DJ [5]
Faelber K [5]
Hessenberger M [5]
Janovic A [5]
Kieninger A [5]
Kieninger AK [5]
Kravcenko U [5]
Kroll J [5]
Kuehlbrandt W [5]
Kuhlbrandt W [5]
Kunz S [5]
Li L [5]
Lilie H [5]
Liu F [5]
Lotfy R [5]
Lu X [5]
Maldener I [5]
Matthaeus C [5]
Muhleip A [5]
Noe F [5]
Pfitzner AK [5]
Rosenbaum E [5]
Rosenmund C [5]
Roux A [5]
Ruta J [5]
Ruwolt M [5]
Sanchez R [5]
Schlegel J [5]
Schleger J [5]
Shi D [5]
Sun C [5]
Tokarz P [5]
Trouw LA [5]
Wanker EE [5]

Author by ORCID

Schur FKM [26]
Klanschnig M [25]
Ricana CL [25]
Kudryashev M [22]
Li S [21]
Guerin A [16]
Mageswaran SK [16]
Chang YW [16]
Martinez M [16]
Striepen B [13]
Soldati-favre D [13]
Chavin S [13]
Huiskonen JT [12]
Carlson LA [11]
Bowden TA [10]
Halldorsson S [10]
Sharp TH [9]
Song Y [8]
Pilhofer M [8]
Hutchings J [7]
Miller EA [7]
Laurent T [7]
Zanetti G [7]
Stancheva VG [6]
Yan C [6]
Zeng C [6]
Lei J [6]
Koster AJ [6]
Shi Y [6]
Trouw LA [5]
Chen Y [5]
Yao H [5]
Wanker EE [5]
Pfitzner AK [5]
Matthaeus C [5]
Crispin M [5]
Maldener I [5]
Muhleip A [5]
Kuhlbrandt W [5]
Weiss GL [5]
Liu F [5]
Dijkstra DJ [5]
Rosenmund C [5]
Roux A [5]
Von Der Malsburg A [5]
Xu J [5]
Yushkevich A [5]
Janovic A [5]
Dietrich L [5]
Hessenberger M [5]
Wollweber F [5]
Kroll J [5]
Ruwolt M [5]
Kravcenko U [5]
Ruta J [5]
Abendstein L [4]
Shankar K [4]
Hensbergen PJ [4]
Altan-bonnet N [4]
Gros P [4]
Van Veelen Pa [4]
Lazarou M [4]
Dong D [4]
Dahmane S [4]
Morado DR [4]
Rutaganira FUN [3]
Bartenschlager R [3]
Ravelli RBG [3]
Cova MM [3]
Koning RI [3]
Makroczyova J [3]
Prasad V [3]
Diebolder CA [3]
Elbaum M [3]
Noble AJ [3]
Chen WD [3]
Berger C [3]
Eisenstein F [3]
Feldmuller M [3]
Ericson CF [3]
Molnar P [3]
Kros A [3]
Hensel Z [3]
Diepold A [3]
Gao X [3]
Kawamoto A [3]
Chlanda P [3]
Wachsmuth-melm M [3]
Croxford M [3]
Zimmermann L [3]
Xu J [3]
Lien YW [3]
Agard D [3]
Boyle AL [3]
Villa E [3]
Pissaridou P [3]
Jonasson M [2]
Zare F [2]
Zhong ED [2]
Mahamid J [2]

Journal

Software

Microscope

Electron Source

Film or detector model

External links

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EMDB [161]

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EMD-60599

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3D View

SARS-CoV-2 spike Wuhan-Hu-1 in the closed conformation induced by Ad5-nCoV vaccine

CryoEM

Release date: March 19, 2025
Resolution: 18.0 Å
EM Method: Subtomogram averaging

Dong D, Song Y, Wu S, Wang B, Peng C, Zhang W, Kong W, Zhang Z, Song J, Hou LH, Li S

Structure (2025) 33 pp. 858-868.e5 [ Pubmed: 40112804 DOI: doi:10.1016/j.str.2025.02.009 ]

EMD-60600

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SARS-CoV-2 spike Wuhan-Hu-1 in the One-RBD-up conformation induced by Ad5-nCoV vaccine

CryoEM

Release date: March 19, 2025
Resolution: 22.0 Å
EM Method: Subtomogram averaging

Dong D, Song Y, Wu S, Wang B, Peng C, Zhang W, Kong W, Zhang Z, Song J, Hou LH, Li S

Structure (2025) 33 pp. 858-868.e5 [ Pubmed: 40112804 DOI: doi:10.1016/j.str.2025.02.009 ]

EMD-60601

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SARS-CoV-2 spike Omicron in the closed conformation induced by Ad5-nCoV vaccine

CryoEM

Release date: March 19, 2025
Resolution: 16.0 Å
EM Method: Subtomogram averaging

Dong D, Song Y, Wu S, Wang B, Peng C, Zhang W, Kong W, Zhang Z, Song J, Hou LH, Li S

Structure (2025) 33 pp. 858-868.e5 [ Pubmed: 40112804 DOI: doi:10.1016/j.str.2025.02.009 ]

EMD-60602

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SARS-CoV-2 spike Omicron in the One-RBD-up conformation induced by Ad5-nCoV vaccine

CryoEM

Release date: March 19, 2025
Resolution: 15.0 Å
EM Method: Subtomogram averaging

Dong D, Song Y, Wu S, Wang B, Peng C, Zhang W, Kong W, Zhang Z, Song J, Hou LH, Li S

Structure (2025) 33 pp. 858-868.e5 [ Pubmed: 40112804 DOI: doi:10.1016/j.str.2025.02.009 ]

EMD-45673

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Raw data

Subtomogram average of the Polar Tube Outer Filament Layer and Inner Filament layer from Encephalitozoon intestinalis microsporidian spores

CryoEM

Release date: Feb. 26, 2025
Resolution: 44.0 Å
EM Method: Subtomogram averaging

Usmani M, Coudray N, Riggi M, Raghu R, Ramchandani H, Bobe D, Kopylov M, Zhong ED, Iwasa JH, Ekiert DC, Bhabha G

bioRxiv (2024) [ DOI: doi:10.1101/2024.07.13.603322 Pubmed: 39026755 ]

EMD-45674

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Raw data

Subtomogram average of a whole Polar Tube cross-section from Encephalitozoon intestinalis microsporidian spores

CryoEM

Release date: Feb. 26, 2025
Resolution: 70.0 Å
EM Method: Subtomogram averaging

Usmani M, Coudray N, Riggi M, Raghu R, Ramchandani H, Bobe D, Kopylov M, Zhong ED, Iwasa JH, Ekiert DC, Bhabha G

bioRxiv (2024) [ DOI: doi:10.1101/2024.07.13.603322 Pubmed: 39026755 ]

EMD-45459

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Structure of in vitro assembled B. anthracis S-layer protein Sap

CryoEM

Release date: Dec. 18, 2024
Resolution: 7.2 Å
EM Method: Subtomogram averaging

Sogues A, Leigh K, Halingstad EV, Van der Verren SE, Cecil AJ, Fioravanti A, Pak AJ, Kudryashev M, Remaut H

PNAS (2024) 121 pp. e2415351121-e2415351121 [ DOI: doi:10.1073/pnas.2415351121 Pubmed: 39652757 ]

EMD-18572

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A segment of clathrin cage from the coat assembled on synaptic vesicle membranes isolated from mouse brain tissue

CryoEM

Release date: Dec. 4, 2024
Resolution: 26.9 Å
EM Method: Subtomogram averaging

Kravcenko U, Ruwolt M, Kroll J, Yushkevich A, Zenkner M, Ruta J, Lotfy R, Wanker EE, Rosenmund C, Liu F, Kudryashev M

PNAS (2024) 121 pp. e2407375121-e2407375121 [ DOI: doi:10.1073/pnas.2407375121 Pubmed: 39602275 ]

EMD-18578

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Non-vesicle carrying clathrin basket, isolated from mouse brain tissue

CryoEM

Release date: Dec. 4, 2024
Resolution: 101.5 Å
EM Method: Subtomogram averaging

Kravcenko U, Ruwolt M, Kroll J, Yushkevich A, Zenkner M, Ruta J, Lotfy R, Wanker EE, Rosenmund C, Liu F, Kudryashev M

PNAS (2024) 121 pp. e2407375121-e2407375121 [ DOI: doi:10.1073/pnas.2407375121 Pubmed: 39602275 ]

EMD-18582

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Non-vesicle carrying clathrin basket from primary hippocampal neurons, cultured on grids

CryoEM

Release date: Dec. 4, 2024
Resolution: 172.5 Å
EM Method: Subtomogram averaging

Kravcenko U, Ruwolt M, Kroll J, Yushkevich A, Zenkner M, Ruta J, Lotfy R, Wanker EE, Rosenmund C, Liu F, Kudryashev M

PNAS (2024) 121 pp. e2407375121-e2407375121 [ DOI: doi:10.1073/pnas.2407375121 Pubmed: 39602275 ]

Sort by: Download

Showing 1 - 10 of 161. Page 1 of 17

Display:

Statistics

Download

Select database:

EMDB [161]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Rous sarcoma virus [25]
Homo sapiens [14]
Severe acute respiratory syndrome coronavirus [13]
Rift valley fever phlebovirus [10]
Oryctolagus cuniculus [10]
Mus musculus [8]
Chikungunya virus [7]
Cryptosporidium parvum [7]
Saccharomyces cerevisiae [7]
Toxoplasma gondii [6]
Xenopus laevis [6]
Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [5]
Chaetomium thermophilum [4]
Enterovirus c [3]
Plasmodium falciparum [3]
Yersinia enterocolitica [3]
Vaccinia virus [3]
Sus scrofa [3]
Vaccinia virus [2]
Murine coronavirus [2]
Chaetomium thermophilum [2]
Adeno-associated virus [2]
Encephalitozoon intestinalis [2]
Vairimorpha necatrix [2]
Caenorhabditis elegans [2]
Salmonella enterica [2]
Ovis aries [2]
(no species) [1]
Human respirovirus 3 [1]
Alphapleolipovirus hrpv6 [1]
Bacillus anthracis [1]
Tula orthohantavirus [1]
Candidatus amoebophilus asiaticus [1]
Algoriphagus machipongonensis [1]
Pseudoalteromonas luteoviolacea [1]
Saccharomyces cerevisiae [1]
Escherichia coli [1]
(no species) [1]
Shigella flexneri [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Li S [30]
Schur FKM [26]
Thader A [26]
Dick RA [25]
Feathers JR [25]
Johnson MC [25]
Klanschnig M [25]
Kudryashev M [25]
Nikulin N [25]
Obr M [25]
Ricana CL [25]
Vogt VM [25]
Chang Y-W [16]
Chang YW [16]
Chen WD [16]
Guerin A [16]
Mageswaran SK [16]
Martinez M [16]
Carlson LA [13]
Chavin S [13]
Shi Y [13]
Soldati-favre D [13]
Striepen B [13]
Thompson CP [13]
Huiskonen JT [12]
Song Y [12]
Harlos K [11]
Lei J [11]
Li M [11]
Bowden TA [10]
Chen W [10]
Halldorsson S [10]
Sai L [10]
Zhang W [10]
Zhang Z [10]
Sharp TH [9]
Zhang Y [9]
Pilhofer M [8]
Xu J [8]
Hutchings J [7]
Laurent T [7]
Miller EA [7]
Zanetti G [7]
Brown NR [6]
Cheung ACM [6]
Daumke O [6]
Huang G [6]
Koster AJ [6]
Liu M [6]
Noel JK [6]
Stancheva VG [6]
Tao Q [6]
Wang K [6]
Wang Q [6]
Yan C [6]
Yang G [6]
Zeng C [6]
Zhang YQ [6]
Zhou Q [6]
Zhu X [6]
Chen Y [5]
Cheng L [5]
Chiaruttin N [5]
Chiaruttini N [5]
Crispin M [5]
Dietrich L [5]
Dijkstra DJ [5]
Faelber K [5]
Hessenberger M [5]
Janovic A [5]
Kieninger A [5]
Kieninger AK [5]
Kravcenko U [5]
Kroll J [5]
Kuehlbrandt W [5]
Kuhlbrandt W [5]
Kunz S [5]
Li L [5]
Lilie H [5]
Liu F [5]
Lotfy R [5]
Lu X [5]
Maldener I [5]
Matthaeus C [5]
Muhleip A [5]
Noe F [5]
Pfitzner AK [5]
Rosenbaum E [5]
Rosenmund C [5]
Roux A [5]
Ruta J [5]
Ruwolt M [5]
Sanchez R [5]
Schlegel J [5]
Schleger J [5]
Shi D [5]
Sun C [5]
Tokarz P [5]
Trouw LA [5]
Wanker EE [5]

Author by ORCID

Schur FKM [26]
Klanschnig M [25]
Ricana CL [25]
Kudryashev M [22]
Li S [21]
Guerin A [16]
Mageswaran SK [16]
Chang YW [16]
Martinez M [16]
Striepen B [13]
Soldati-favre D [13]
Chavin S [13]
Huiskonen JT [12]
Carlson LA [11]
Bowden TA [10]
Halldorsson S [10]
Sharp TH [9]
Song Y [8]
Pilhofer M [8]
Hutchings J [7]
Miller EA [7]
Laurent T [7]
Zanetti G [7]
Stancheva VG [6]
Yan C [6]
Zeng C [6]
Lei J [6]
Koster AJ [6]
Shi Y [6]
Trouw LA [5]
Chen Y [5]
Yao H [5]
Wanker EE [5]
Pfitzner AK [5]
Matthaeus C [5]
Crispin M [5]
Maldener I [5]
Muhleip A [5]
Kuhlbrandt W [5]
Weiss GL [5]
Liu F [5]
Dijkstra DJ [5]
Rosenmund C [5]
Roux A [5]
Von Der Malsburg A [5]
Xu J [5]
Yushkevich A [5]
Janovic A [5]
Dietrich L [5]
Hessenberger M [5]
Wollweber F [5]
Kroll J [5]
Ruwolt M [5]
Kravcenko U [5]
Ruta J [5]
Abendstein L [4]
Shankar K [4]
Hensbergen PJ [4]
Altan-bonnet N [4]
Gros P [4]
Van Veelen Pa [4]
Lazarou M [4]
Dong D [4]
Dahmane S [4]
Morado DR [4]
Rutaganira FUN [3]
Bartenschlager R [3]
Ravelli RBG [3]
Cova MM [3]
Koning RI [3]
Makroczyova J [3]
Prasad V [3]
Diebolder CA [3]
Elbaum M [3]
Noble AJ [3]
Chen WD [3]
Berger C [3]
Eisenstein F [3]
Feldmuller M [3]
Ericson CF [3]
Molnar P [3]
Kros A [3]
Hensel Z [3]
Diepold A [3]
Gao X [3]
Kawamoto A [3]
Chlanda P [3]
Wachsmuth-melm M [3]
Croxford M [3]
Zimmermann L [3]
Xu J [3]
Lien YW [3]
Agard D [3]
Boyle AL [3]
Villa E [3]
Pissaridou P [3]
Jonasson M [2]
Zare F [2]
Zhong ED [2]
Mahamid J [2]

Journal

Software

Microscope

Electron Source

Film or detector model

External links