Edit your search query here and hit Return to execute it:
final_angle_assignment_software:"AV3"

Filter By

Current Database

  • EMDB [73]

Current status

  • REL [73]

Sample type

  • Protein [57]
  • Virus [48]
  • Complex [14]
  • Cellular component [10]
  • Cell [1]
  • Ligand [1]

Organism

  • Human immunodeficiency virus 1 [32]
  • Homo sapiens [13]
  • Chlamydomonas reinhardtii [10]
  • Zaire ebolavirus [6]
  • Chaetomium thermophilum [5]
  • Equine infectious anemia virus [4]
  • Sus scrofa [4]
  • Rattus norvegicus [3]
  • Murine leukemia virus [3]
  • Mus musculus [2]
  • Marburg marburgvirus [2]
  • Chaetomium thermophilum [2]
  • Equine infectious anemia virus [1]
  • Human immunodeficiency virus 1 [1]
  • Mason-pfizer monkey virus [1]
  • Tetrahymena thermophila [1]

EM Method

  • Subtomogram averaging [72]
  • Single-particle [1]

Resolution

  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [9]
  • ≥ 8Å and < 12Å [39]
  • ≥ 12Å and < 16Å [1]
  • ≥ 20Å and < 30Å [8]
  • ≥ 30Å [4]

Release Date

  • 2020 [17]
  • 2018 [20]
  • 2017 [14]
  • 2016 [22]

Author by name

  • Briggs JAG [51]
  • Briggs JA [38]
  • Krausslich HG [35]
  • Glass B [32]
  • Mattei S [28]
  • Hagen WJ [23]
  • Bykov YS [17]
  • Engel BD [17]
  • Schaffer M [17]
  • Kovtun O [15]
  • Owen DJ [15]
  • Schur FKM [12]
  • Wan W [12]
  • Albert S [9]
  • Baumeister W [9]
  • Dodonova SO [9]
  • Plitzko JM [9]
  • Ariotti N [8]
  • Becker S [8]
  • Clarke M [8]
  • Collins BM [8]
  • Koehler A [8]
  • Kolesnikova L [8]
  • Kraeusslich HG [8]
  • Leneva N [8]
  • Mueller B [8]
  • Muller B [8]
  • Tan A [8]
  • Tan AWK [8]
  • Teasdale RD [8]
  • Dickson VK [7]
  • Kane Dickson V [7]
  • Kelly BT [7]
  • Bornholdt ZA [6]
  • Norris M [6]
  • Norris MJ [6]
  • Ollman-saphire E [6]
  • Saphire EO [6]
  • Broad AM [4]
  • Dick RA [4]
  • Dolezal M [4]
  • Feathers JR [4]
  • Johnson MC [4]
  • Kravchuk V [4]
  • Lyddon TD [4]
  • Morado DR [4]
  • Murciano B [4]
  • Owen D [4]
  • Perilla JR [4]
  • Qu K [4]
  • Rein A [4]
  • Ricana CL [4]
  • Ruml T [4]
  • Rumlova M [4]
  • Vogt VM [4]
  • Xu C [4]
  • Jakobi AJ [3]
  • Kirkpatrick JM [3]
  • Obr M [3]
  • Sachse C [3]
  • Schur FK [3]
  • Arjen JJ [2]
  • Hagen WJH [2]
  • Kraeusslich H-G [2]
  • Noda T [2]
  • Basu K [1]
  • Bui KH [1]
  • Engel ED [1]
  • Hsu TC [1]
  • Ichikawa M [1]
  • Kastritis PL [1]
  • Liu D [1]
  • Rohan TS [1]
  • Turonova B [1]
  • Yang S [1]

Journal

  • SCIENCE [23]
  • ELIFE [15]
  • PNAS [12]
  • NATURE [10]
  • SCI ADV [7]
  • PLOS PATHOG [4]
  • J STRUCT BIOL [1]
  • NAT COMMUN [1]

Software

  • AV3 [73]
  • TOM TOOLBOX [38]
  • CTFFIND [34]
  • TOM [34]
  • CTFPHASEFLIP [26]
  • MATLAB [17]
  • NOVACTF [14]
  • AMIRAFPM [7]
  • IMOD [6]
  • DYNAMO [4]
  • PEET [4]
  • UCSF CHIMERA [3]
  • AMIRA [2]

Microscope

  • FEI TITAN KRIOS [73]

Electron Source

  • FIELD EMISSION GUN [73]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [63]
  • GATAN K2 SUMMIT 4K X 4K [9]
  • FEI FALCON II 4K X 4K [1]

External links

  • AlphaFold DB [5]
  • EMPIAR [2]
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Showing 1 - 10 of 73. Page 1 of 8
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EMD-11660
Download Map
3D View
Structure of VP40 matrix layer in EBOV NP-VP24-VP35-VP40 VLPs
Release date: Oct. 14, 2020
Resolution: 10.2 Å
EM Method: Subtomogram averaging

Wan W, Clarke M, Norris MJ, Kolesnikova L, Koehler A, Bornholdt ZA, Becker S, Ollman-Saphire E, Briggs JA

eLife (2020) 9 [ DOI: doi:10.7554/eLife.59225 Pubmed: 33016878 ]

EMD-11661
Download Map
3D View
Structure of VP40 matrix layer in EBOV VP40 VLPs
Release date: Oct. 14, 2020
Resolution: 9.8 Å
EM Method: Subtomogram averaging

Wan W, Clarke M, Norris MJ, Kolesnikova L, Koehler A, Bornholdt ZA, Becker S, Ollman-Saphire E, Briggs JA

eLife (2020) 9 [ DOI: doi:10.7554/eLife.59225 Pubmed: 33016878 ]

EMD-11662
Download Map
3D View
Structure of VP40 matrix layer in EBOV VP40-GP VLPs
Release date: Oct. 14, 2020
Resolution: 9.9 Å
EM Method: Subtomogram averaging

Wan W, Clarke M, Norris MJ, Kolesnikova L, Koehler A, Bornholdt ZA, Becker S, Ollman-Saphire E, Briggs JA

eLife (2020) 9 [ DOI: doi:10.7554/eLife.59225 Pubmed: 33016878 ]

EMD-11663
Download Map
3D View
Structure of VP40 matrix layer in intact MARV virions
Release date: Oct. 14, 2020
Resolution: 9.6 Å
EM Method: Subtomogram averaging

Wan W, Clarke M, Norris MJ, Kolesnikova L, Koehler A, Bornholdt ZA, Becker S, Ollman-Saphire E, Briggs JA

eLife (2020) 9 [ DOI: doi:10.7554/eLife.59225 Pubmed: 33016878 ]

EMD-11664
Download Map
3D View
Structure of VP40 matrix layer in MARV VP40 VLPs
Release date: Oct. 14, 2020
Resolution: 10.8 Å
EM Method: Subtomogram averaging

Wan W, Clarke M, Norris MJ, Kolesnikova L, Koehler A, Bornholdt ZA, Becker S, Ollman-Saphire E, Briggs JA

eLife (2020) 9 [ DOI: doi:10.7554/eLife.59225 Pubmed: 33016878 ]

EMD-11665
Download Map
3D View
Structure of GP in EBOV VP40-GP VLPs
Release date: Oct. 14, 2020
Resolution: 12.8 Å
EM Method: Subtomogram averaging

Wan W, Clarke M, Norris MJ, Kolesnikova L, Koehler A, Bornholdt ZA, Becker S, Ollman-Saphire E, Briggs JA

eLife (2020) 9 [ DOI: doi:10.7554/eLife.59225 Pubmed: 33016878 ]

EMD-10748
Download Map
3D View
AP2 on a membrane containing tyrosine-based cargo peptide
Release date: July 29, 2020
Resolution: 9.1 Å
EM Method: Subtomogram averaging
Fitted PDBs: 6yaf
Q-score: 0.198

Kovtun O, Dickson VK, Kelly BT, Owen DJ, Briggs JAG

Sci Adv (2020) 6 pp. eaba8381-eaba8381 [ Pubmed: 32743075 DOI: doi:10.1126/sciadv.aba8381 ]

EMD-10749
Download Map
3D View
AP2 dimer on a membrane containing tyrosine-based cargo peptide
Release date: July 29, 2020
Resolution: 10.2 Å
EM Method: Subtomogram averaging

Kovtun O, Dickson VK, Kelly BT, Owen DJ, Briggs JAG

Sci Adv (2020) 6 pp. eaba8381-eaba8381 [ Pubmed: 32743075 DOI: doi:10.1126/sciadv.aba8381 ]

EMD-10750
Download Map
3D View
AP2 in clathrin coats assembled on a membrane containing tyrosine-based cargo peptide
Release date: July 29, 2020
Resolution: 11.9 Å
EM Method: Subtomogram averaging

Kovtun O, Dickson VK, Kelly BT, Owen DJ, Briggs JAG

Sci Adv (2020) 6 pp. eaba8381-eaba8381 [ Pubmed: 32743075 DOI: doi:10.1126/sciadv.aba8381 ]

EMD-10751
Download Map
3D View
AP2 in clathrin coats assembled on a membrane containing dileucine- and tyrosine-based cargo peptides
Release date: July 29, 2020
Resolution: 10.2 Å
EM Method: Subtomogram averaging
Fitted PDBs: 6yah
Q-score: 0.105

Kovtun O, Dickson VK, Kelly BT, Owen DJ, Briggs JAG

Sci Adv (2020) 6 pp. eaba8381-eaba8381 [ Pubmed: 32743075 DOI: doi:10.1126/sciadv.aba8381 ]

Sort by: Download
Showing 1 - 10 of 73. Page 1 of 8
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [73]

Current status

  • REL [73]

Sample type

  • Protein [57]
  • Virus [48]
  • Complex [14]
  • Cellular component [10]
  • Cell [1]
  • Ligand [1]

Organism

  • Human immunodeficiency virus 1 [32]
  • Homo sapiens [13]
  • Chlamydomonas reinhardtii [10]
  • Zaire ebolavirus [6]
  • Chaetomium thermophilum [5]
  • Equine infectious anemia virus [4]
  • Sus scrofa [4]
  • Rattus norvegicus [3]
  • Murine leukemia virus [3]
  • Mus musculus [2]
  • Marburg marburgvirus [2]
  • Chaetomium thermophilum [2]
  • Equine infectious anemia virus [1]
  • Human immunodeficiency virus 1 [1]
  • Mason-pfizer monkey virus [1]
  • Tetrahymena thermophila [1]

EM Method

  • Subtomogram averaging [72]
  • Single-particle [1]

Resolution

  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [9]
  • ≥ 8Å and < 12Å [39]
  • ≥ 12Å and < 16Å [1]
  • ≥ 20Å and < 30Å [8]
  • ≥ 30Å [4]

Release Date

  • 2020 [17]
  • 2018 [20]
  • 2017 [14]
  • 2016 [22]

Author by name

  • Briggs JAG [51]
  • Briggs JA [38]
  • Krausslich HG [35]
  • Glass B [32]
  • Mattei S [28]
  • Hagen WJ [23]
  • Bykov YS [17]
  • Engel BD [17]
  • Schaffer M [17]
  • Kovtun O [15]
  • Owen DJ [15]
  • Schur FKM [12]
  • Wan W [12]
  • Albert S [9]
  • Baumeister W [9]
  • Dodonova SO [9]
  • Plitzko JM [9]
  • Ariotti N [8]
  • Becker S [8]
  • Clarke M [8]
  • Collins BM [8]
  • Koehler A [8]
  • Kolesnikova L [8]
  • Kraeusslich HG [8]
  • Leneva N [8]
  • Mueller B [8]
  • Muller B [8]
  • Tan A [8]
  • Tan AWK [8]
  • Teasdale RD [8]
  • Dickson VK [7]
  • Kane Dickson V [7]
  • Kelly BT [7]
  • Bornholdt ZA [6]
  • Norris M [6]
  • Norris MJ [6]
  • Ollman-saphire E [6]
  • Saphire EO [6]
  • Broad AM [4]
  • Dick RA [4]
  • Dolezal M [4]
  • Feathers JR [4]
  • Johnson MC [4]
  • Kravchuk V [4]
  • Lyddon TD [4]
  • Morado DR [4]
  • Murciano B [4]
  • Owen D [4]
  • Perilla JR [4]
  • Qu K [4]
  • Rein A [4]
  • Ricana CL [4]
  • Ruml T [4]
  • Rumlova M [4]
  • Vogt VM [4]
  • Xu C [4]
  • Jakobi AJ [3]
  • Kirkpatrick JM [3]
  • Obr M [3]
  • Sachse C [3]
  • Schur FK [3]
  • Arjen JJ [2]
  • Hagen WJH [2]
  • Kraeusslich H-G [2]
  • Noda T [2]
  • Basu K [1]
  • Bui KH [1]
  • Engel ED [1]
  • Hsu TC [1]
  • Ichikawa M [1]
  • Kastritis PL [1]
  • Liu D [1]
  • Rohan TS [1]
  • Turonova B [1]
  • Yang S [1]

Journal

  • SCIENCE [23]
  • ELIFE [15]
  • PNAS [12]
  • NATURE [10]
  • SCI ADV [7]
  • PLOS PATHOG [4]
  • J STRUCT BIOL [1]
  • NAT COMMUN [1]

Software

  • AV3 [73]
  • TOM TOOLBOX [38]
  • CTFFIND [34]
  • TOM [34]
  • CTFPHASEFLIP [26]
  • MATLAB [17]
  • NOVACTF [14]
  • AMIRAFPM [7]
  • IMOD [6]
  • DYNAMO [4]
  • PEET [4]
  • UCSF CHIMERA [3]
  • AMIRA [2]

Microscope

  • FEI TITAN KRIOS [73]

Electron Source

  • FIELD EMISSION GUN [73]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [63]
  • GATAN K2 SUMMIT 4K X 4K [9]
  • FEI FALCON II 4K X 4K [1]

External links

  • AlphaFold DB [5]
  • EMPIAR [2]