Edit your search query here and hit Return to execute it:
final_angle_assignment_projections_count:{0 TO 100}

Filter By

Current Database

  • EMDB [24]

Current status

  • REL [24]

Sample type

  • Complex [18]
  • Protein [18]
  • Virus [6]
  • Ligand [5]
  • RNA [2]
  • DNA [1]

Organism

  • Homo sapiens [12]
  • Equine infectious anemia virus [4]
  • Mus musculus [2]
  • Equine infectious anemia virus [1]
  • Hypsibius dujardini [1]
  • Mycolicibacterium smegmatis [1]
  • Synthetic construct [1]
  • Bacteriophage sp. [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Zika virus [1]
  • Amanita phalloides [1]
  • Escherichia coli [1]
  • Sus scrofa [1]

EM Method

  • Single-particle [20]
  • Subtomogram averaging [4]

Resolution

  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [6]
  • ≥ 8Å and < 12Å [4]
  • ≥ 12Å and < 16Å [1]
  • ≥ 20Å and < 30Å [2]

Model molecular weight

  • 100-250 kDa [7]
  • 250-500 kDa [5]
  • 500-1000 kDa [4]
  • 1-2 MDa [1]
  • > 10 MDa [1]

Release Date

  • 2021 [6]
  • 2020 [4]
  • 2018 [9]
  • 2017 [4]
  • 2016 [1]

Author by name

  • Bailey LJ [8]
  • Carragher B [8]
  • Deprez B [8]
  • Deprez-poulain R [8]
  • Farcasanu M [8]
  • Koide A [8]
  • Koide S [8]
  • Kossiakoff AA [8]
  • Lee D [8]
  • Li S [8]
  • Liang WG [8]
  • Liu DR [8]
  • Mccord LA [8]
  • Potter CS [8]
  • Potter SC [8]
  • Shang W [8]
  • Tan YZ [8]
  • Tang WJ [8]
  • Wang A [8]
  • Wei H [8]
  • Woods VA [8]
  • Zhang Z [8]
  • Briggs JAG [4]
  • Broad AM [4]
  • Dey S [4]
  • Dick RA [4]
  • Feathers JR [4]
  • Johnson MC [4]
  • Kravchuk V [4]
  • Lyddon TD [4]
  • Morado DR [4]
  • Perilla JR [4]
  • Ricana CL [4]
  • Schur FKM [4]
  • Vogt VM [4]
  • Xu C [4]
  • Cong Y [3]
  • Li D [3]
  • Luo Y [3]
  • Sil P [3]
  • Wan G [3]
  • Wang Q [3]
  • Zhao Y [3]
  • Zhou X [3]
  • Cai H [2]
  • Fan J [2]
  • Ma L [2]
  • Qu Q [2]
  • Wu H [2]
  • Zhang X [2]
  • Bao J [1]
  • Biswas C [1]
  • Cramer P [1]
  • Dean WF [1]
  • Doore SM [1]
  • Dover JA [1]
  • Farnung L [1]
  • Fibriansah G [1]
  • Hirai H [1]
  • Iwasaki K [1]
  • Kirykowicz AM [1]
  • Kostyuchenko VA [1]
  • Lim EX [1]
  • Liu X [1]
  • Lok SM [1]
  • Maeda S [1]
  • Matoba K [1]
  • Mihara E [1]
  • Miyazaki N [1]
  • Ng TS [1]
  • Ooi JS [1]
  • Parent KN [1]
  • Paul S [1]
  • Schrad JR [1]
  • Sengupta J [1]
  • Shi J [1]
  • Takagi J [1]
  • Tamura-kawakami K [1]
  • Thompson S [1]
  • Wigge C [1]
  • Woodward JD [1]
  • Zhang S [1]
  • Zhang Y [1]

Author by ORCID

  • Tan YZ [8]
  • Lee D [8]
  • Carragher B [8]
  • Deprez-poulain R [8]
  • Woods VA [8]
  • Tang WJ [8]
  • Potter CS [8]
  • Broad AM [4]
  • Kravchuk V [4]
  • Feathers JR [4]
  • Johnson MC [4]
  • Ricana CL [4]
  • Xu C [4]
  • Perilla JR [4]
  • Dick RA [4]
  • Briggs JAG [4]
  • Morado DR [4]
  • Schur FKM [4]
  • Wan G [3]
  • Cai H [2]
  • Li D [2]
  • Thompson S [1]
  • Miyazaki N [1]
  • Farnung L [1]
  • Fibriansah G [1]
  • Sengupta J [1]
  • Lok SM [1]
  • Ooi JS [1]

Journal

  • ELIFE [8]
  • PLOS PATHOG [4]
  • COMMUN BIOL [3]
  • STRUCTURE [2]
  • TO BE PUBLISHED [2]
  • CELL REP [1]
  • FRONT MOL BIOSCI [1]
  • J BIOL CHEM [1]
  • J CELL BIOL [1]
  • NATURE [1]

Software

  • RELION [10]
  • SPIDER [5]
  • AV3 [4]
  • EMAN2 [4]
  • MATLAB [4]
  • TOM TOOLBOX [4]
  • CRYOSPARC [2]
  • AUTO3DEM [1]
  • CTFFIND [1]
  • CTFPHASEFLIP [1]
  • EMAN [1]
  • NOVACTF [1]

Microscope

  • FEI TITAN KRIOS [17]
  • FEI POLARA 300 [4]
  • FEI TECNAI F20 [1]
  • HITACHI H-9500SD [1]
  • JEOL 2200FS [1]

Electron Source

  • FIELD EMISSION GUN [23]
  • LAB6 [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [10]
  • FEI EAGLE 4K X 4K [4]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • GATAN K3 6K X 4K [2]
  • DIRECT ELECTRON DE-20 5K X 3K [1]
  • FEI FALCON II 4K X 4K [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]
  • TVIPS TEMCAM-F224 2K X 2K [1]

External links

  • PDB [24]
  • InterPro [18]
  • PDBe-Kb [18]
  • UniProt [18]
  • Gene Ontology [17]
  • AlphaFold DB [15]
  • Pfam [14]
  • ChEBI [5]
  • ChEMBL [5]
  • Complex Portal [5]
  • CATH [4]
  • DrugBank [4]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 24. Page 1 of 3
Display:
Statistics
×

Download


Preview 10 entries View All Download file
EMD-31753
Download Map
3D View
Cryo-EM structure of Patched in lipid nanodisc - the wildtype, 3.5 angstrom re-processed with dataset of 7dzq
CryoEM
Release date: Sept. 22, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7v6y
Q-score: 0.448
Similar entry percentile: 54%

Luo Y, Wan G, Zhang X, Zhou X, Wang Q, Fan J, Cai H, Ma L, Wu H, Qu Q, Cong Y, Zhao Y, Li D

Structure (2021) 29 pp. 1286- [ Pubmed: 34174188 DOI: doi:10.1016/j.str.2021.06.004 ]

EMD-31754
Download Map
3D View
Cryo-EM structure of Patched1 V1084A mutant in lipid nanodisc, 3.64 angstrom reprocessed with the dataset of 7dzp
CryoEM
Release date: Sept. 22, 2021
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 7v6z
Q-score: 0.392
Similar entry percentile: 37%

Luo Y, Wan G, Zhang X, Zhou X, Wang Q, Fan J, Cai H, Ma L, Wu H, Qu Q, Cong Y, Zhao Y, Li D

Structure (2021) 29 pp. 1286- [ Pubmed: 34174188 DOI: doi:10.1016/j.str.2021.06.004 ]

EMD-31595
Download Map
3D View
Cryo-EM structure of the hedgehog release protein Disp from water bear Hypsibius dujardini
CryoEM
Release date: Sept. 8, 2021
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 7fif
Q-score: 0.283
Similar entry percentile: 93%

Luo Y, Wan G, Zhou X, Wang Q, Zhang Y, Bao J, Cong Y, Zhao Y, Li D

Front Mol Biosci (2021) 8 pp. 701826-701826 [ DOI: doi:10.3389/fmolb.2021.701826 Pubmed: 34557519 ]

EMD-31004
Download Map
3D View
Heme arrested off-pathway oligomer of alpha-synuclein
CryoEM
Release date: April 14, 2021
Resolution: 10.4 Å
EM Method: Single-particle

Dey S, Sil P

Commun Biol (2021) [ ]

EMD-31023
Download Map
3D View
on-pathway intermediate oligomer of alpha-synuclein
CryoEM
Release date: April 14, 2021
Resolution: 11.0 Å
EM Method: Single-particle

Dey S, Sil P

Commun Biol (2021) [ ]

EMD-31024
Download Map
3D View
an arrested off-pathway oligomer of alpha-synuclein upon heme treatment after fibril formation
CryoEM
Release date: April 14, 2021
Resolution: 8.9 Å
EM Method: Single-particle

Dey S, Sil P

Commun Biol (2021) [ ]

EMD-10381
Download Map
3D View
A 3.7 Angstrom structure of the EIAV CA-SP hexamer C2 from Gag-deltaMA tubes assembled at pH8
CryoEM
Release date: Jan. 15, 2020
Resolution: 3.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 6t61
Q-score: 0.419
Similar entry percentile: 52%

Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM

PLoS Pathog (2020) 16 pp. e1008277-e1008277 [ DOI: doi:10.1371/journal.ppat.1008277 Pubmed: 31986188 ]

EMD-10382
Download Map
3D View
A 3.9 Angstrom structure of the EIAV CA-SP hexamer C6 from Gag-dMA spheres assembled at pH8
CryoEM
Release date: Jan. 15, 2020
Resolution: 3.9 Å
EM Method: Subtomogram averaging

Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM

PLoS Pathog (2020) 16 pp. e1008277-e1008277 [ DOI: doi:10.1371/journal.ppat.1008277 Pubmed: 31986188 ]

EMD-10383
Download Map
3D View
A structure of the EIAV CA-SP hexamer C2 from Gag-deltaMA tubes assembled at pH6
CryoEM
Release date: Jan. 15, 2020
Resolution: 3.8 Å
EM Method: Subtomogram averaging
Fitted PDBs: 6t63
Q-score: 0.435
Similar entry percentile: 66%

Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM

PLoS Pathog (2020) 16 pp. e1008277-e1008277 [ DOI: doi:10.1371/journal.ppat.1008277 Pubmed: 31986188 ]

EMD-10384
Download Map
3D View
A structure of the EIAV CA-SP hexamer C6 from Gag-deltaMA spheres assembled at pH6
CryoEM
Release date: Jan. 15, 2020
Resolution: 3.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 6t64
Q-score: 0.409
Similar entry percentile: 47%

Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM

PLoS Pathog (2020) 16 pp. e1008277-e1008277 [ DOI: doi:10.1371/journal.ppat.1008277 Pubmed: 31986188 ]

Sort by: Download
Showing 1 - 10 of 24. Page 1 of 3
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [24]

Current status

  • REL [24]

Sample type

  • Complex [18]
  • Protein [18]
  • Virus [6]
  • Ligand [5]
  • RNA [2]
  • DNA [1]

Organism

  • Homo sapiens [12]
  • Equine infectious anemia virus [4]
  • Mus musculus [2]
  • Equine infectious anemia virus [1]
  • Hypsibius dujardini [1]
  • Mycolicibacterium smegmatis [1]
  • Synthetic construct [1]
  • Bacteriophage sp. [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Zika virus [1]
  • Amanita phalloides [1]
  • Escherichia coli [1]
  • Sus scrofa [1]

EM Method

  • Single-particle [20]
  • Subtomogram averaging [4]

Resolution

  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [6]
  • ≥ 8Å and < 12Å [4]
  • ≥ 12Å and < 16Å [1]
  • ≥ 20Å and < 30Å [2]

Model molecular weight

  • 100-250 kDa [7]
  • 250-500 kDa [5]
  • 500-1000 kDa [4]
  • 1-2 MDa [1]
  • > 10 MDa [1]

Release Date

  • 2021 [6]
  • 2020 [4]
  • 2018 [9]
  • 2017 [4]
  • 2016 [1]

Author by name

  • Bailey LJ [8]
  • Carragher B [8]
  • Deprez B [8]
  • Deprez-poulain R [8]
  • Farcasanu M [8]
  • Koide A [8]
  • Koide S [8]
  • Kossiakoff AA [8]
  • Lee D [8]
  • Li S [8]
  • Liang WG [8]
  • Liu DR [8]
  • Mccord LA [8]
  • Potter CS [8]
  • Potter SC [8]
  • Shang W [8]
  • Tan YZ [8]
  • Tang WJ [8]
  • Wang A [8]
  • Wei H [8]
  • Woods VA [8]
  • Zhang Z [8]
  • Briggs JAG [4]
  • Broad AM [4]
  • Dey S [4]
  • Dick RA [4]
  • Feathers JR [4]
  • Johnson MC [4]
  • Kravchuk V [4]
  • Lyddon TD [4]
  • Morado DR [4]
  • Perilla JR [4]
  • Ricana CL [4]
  • Schur FKM [4]
  • Vogt VM [4]
  • Xu C [4]
  • Cong Y [3]
  • Li D [3]
  • Luo Y [3]
  • Sil P [3]
  • Wan G [3]
  • Wang Q [3]
  • Zhao Y [3]
  • Zhou X [3]
  • Cai H [2]
  • Fan J [2]
  • Ma L [2]
  • Qu Q [2]
  • Wu H [2]
  • Zhang X [2]
  • Bao J [1]
  • Biswas C [1]
  • Cramer P [1]
  • Dean WF [1]
  • Doore SM [1]
  • Dover JA [1]
  • Farnung L [1]
  • Fibriansah G [1]
  • Hirai H [1]
  • Iwasaki K [1]
  • Kirykowicz AM [1]
  • Kostyuchenko VA [1]
  • Lim EX [1]
  • Liu X [1]
  • Lok SM [1]
  • Maeda S [1]
  • Matoba K [1]
  • Mihara E [1]
  • Miyazaki N [1]
  • Ng TS [1]
  • Ooi JS [1]
  • Parent KN [1]
  • Paul S [1]
  • Schrad JR [1]
  • Sengupta J [1]
  • Shi J [1]
  • Takagi J [1]
  • Tamura-kawakami K [1]
  • Thompson S [1]
  • Wigge C [1]
  • Woodward JD [1]
  • Zhang S [1]
  • Zhang Y [1]

Author by ORCID

  • Tan YZ [8]
  • Lee D [8]
  • Carragher B [8]
  • Deprez-poulain R [8]
  • Woods VA [8]
  • Tang WJ [8]
  • Potter CS [8]
  • Broad AM [4]
  • Kravchuk V [4]
  • Feathers JR [4]
  • Johnson MC [4]
  • Ricana CL [4]
  • Xu C [4]
  • Perilla JR [4]
  • Dick RA [4]
  • Briggs JAG [4]
  • Morado DR [4]
  • Schur FKM [4]
  • Wan G [3]
  • Cai H [2]
  • Li D [2]
  • Thompson S [1]
  • Miyazaki N [1]
  • Farnung L [1]
  • Fibriansah G [1]
  • Sengupta J [1]
  • Lok SM [1]
  • Ooi JS [1]

Journal

  • ELIFE [8]
  • PLOS PATHOG [4]
  • COMMUN BIOL [3]
  • STRUCTURE [2]
  • TO BE PUBLISHED [2]
  • CELL REP [1]
  • FRONT MOL BIOSCI [1]
  • J BIOL CHEM [1]
  • J CELL BIOL [1]
  • NATURE [1]

Software

  • RELION [10]
  • SPIDER [5]
  • AV3 [4]
  • EMAN2 [4]
  • MATLAB [4]
  • TOM TOOLBOX [4]
  • CRYOSPARC [2]
  • AUTO3DEM [1]
  • CTFFIND [1]
  • CTFPHASEFLIP [1]
  • EMAN [1]
  • NOVACTF [1]

Microscope

  • FEI TITAN KRIOS [17]
  • FEI POLARA 300 [4]
  • FEI TECNAI F20 [1]
  • HITACHI H-9500SD [1]
  • JEOL 2200FS [1]

Electron Source

  • FIELD EMISSION GUN [23]
  • LAB6 [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [10]
  • FEI EAGLE 4K X 4K [4]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • GATAN K3 6K X 4K [2]
  • DIRECT ELECTRON DE-20 5K X 3K [1]
  • FEI FALCON II 4K X 4K [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]
  • TVIPS TEMCAM-F224 2K X 2K [1]

External links

  • PDB [24]
  • InterPro [18]
  • PDBe-Kb [18]
  • UniProt [18]
  • Gene Ontology [17]
  • AlphaFold DB [15]
  • Pfam [14]
  • ChEBI [5]
  • ChEMBL [5]
  • Complex Portal [5]
  • CATH [4]
  • DrugBank [4]
  • SCOP2 [1]