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ctf_correction_software:CTFFIN*

Filter By

Current Database

  • EMDB [2882]

Current status

  • REL [2882]

Sample type

  • Complex [2390]
  • Protein [1556]
  • Ligand [811]
  • Virus [329]
  • RNA [210]
  • Cellular component [145]
  • DNA [132]
  • Cell [54]
  • Other [18]
  • Tissue [5]

Organism

  • Homo sapiens [676]
  • Escherichia coli [239]
  • Synthetic construct [152]
  • Bos taurus [140]
  • Saccharomyces cerevisiae [121]
  • Mus musculus [119]
  • Sus scrofa [88]
  • Leishmania tarentolae [86]
  • Severe acute respiratory syndrome coronavirus [82]
  • Saccharomyces cerevisiae [56]
  • Rattus norvegicus [52]
  • Thermus thermophilus [52]
  • Lama glama [46]
  • Human immunodeficiency virus 1 [45]
  • Chlamydomonas reinhardtii [45]
  • Escherichia coli [42]
  • Simian virus 40 [34]
  • Oryctolagus cuniculus [33]
  • Xenopus laevis [29]
  • Drosophila melanogaster [28]
  • Cricetulus griseus [26]
  • Chaetomium thermophilum [21]
  • Porphyridium purpureum [19]
  • Gallus gallus [19]
  • Hepatitis b virus [18]
  • Acetivibrio thermocellus [18]
  • Orthoflavivirus flavi [17]
  • Methanospirillum hungatei [17]
  • Escherichia coli [17]
  • Arabidopsis thaliana [16]
  • Human herpesvirus 1 [15]
  • Mycobacterium tuberculosis [14]
  • Escherichia coli [13]
  • Chikungunya virus [12]
  • Equus caballus [12]
  • Staphylococcus phage p68 [11]
  • Pseudomonas aeruginosa [11]
  • Squalus acanthias [11]
  • Human immunodeficiency virus [10]
  • Vigna radiata [10]
  • Pseudomonas aeruginosa [10]
  • Gloeobacter violaceus [10]
  • Yarrowia lipolytica [10]
  • Tetrahymena thermophila [10]
  • Influenza a virus [9]
  • Staphylococcus aureus [9]
  • Entamoeba histolytica [9]
  • Semliki forest virus [8]
  • Influenza d virus [8]
  • Brome mosaic virus [8]
  • Zaire ebolavirus [8]
  • Brevibacterium linens [8]
  • Pseudomonas virus pa223 [8]
  • Detrevirus d3 [8]
  • Babesia divergens [8]
  • Spinacia oleracea [8]
  • Norwalk virus [8]
  • Mycobacteroides abscessus [8]
  • 3683496 [8]
  • Schizosaccharomyces pombe [8]
  • Danio rerio [8]
  • Chaetoceros gracilis [7]
  • Porcine epidemic diarrhea virus [7]
  • Rhodospirillum rubrum [6]
  • Eastern equine encephalitis virus [6]
  • Orthoflavivirus encephalitidis [6]
  • Phomopsis amygdali [6]
  • Bacillus subtilis [6]
  • Salasvirus phi29 [6]
  • Rotavirus a [6]
  • Euglena gracilis [6]
  • Azotobacter vinelandii [6]
  • Escherichia coli [6]
  • Enterovirus b [6]
  • Macaca mulatta [6]
  • Hepatitis b virus [5]
  • Synechocystis sp. pcc 6803 [5]
  • Vibrio virus nt1 [5]
  • Norwalk virus [5]
  • Pseudomonas aeruginosa [5]
  • Thermus thermophilus [5]
  • Alkalihalobacillus halodurans [5]
  • Lactococcus phage nocturne116 [5]
  • Vicugna pacos [5]
  • Thermococcus profundus [5]
  • Caenorhabditis elegans [5]
  • Chaetomium thermophilum [5]
  • Strongylocentrotus purpuratus [5]
  • Haliangium ochraceum [5]
  • Mycobacterium tuberculosis [5]
  • Human herpesvirus 1 [4]
  • Cereibacter sphaeroides [4]
  • Enterobacteria phage t4 [4]
  • (no species) [4]
  • Orthoflavivirus louisense [4]
  • Influenza c virus [4]
  • Simian foamy virus [4]
  • Pseudomonas phage pp7 [4]
  • Desulfofustis sp. pb-srb1 [4]
  • Deltainfluenzavirus influenzae [4]

EM Method

  • Single-particle [2551]
  • Helical reconstruction [164]
  • Subtomogram averaging [133]
  • Tomography [34]

Resolution

  • < 2Å [28]
  • ≥ 2Å and < 3Å [501]
  • ≥ 3Å and < 4Å [1083]
  • ≥ 4Å and < 5Å [352]
  • ≥ 5Å and < 6Å [92]
  • ≥ 6Å and < 8Å [206]
  • ≥ 8Å and < 12Å [221]
  • ≥ 12Å and < 16Å [94]
  • ≥ 16Å and < 20Å [119]
  • ≥ 20Å and < 30Å [123]
  • ≥ 30Å [41]

Model molecular weight

  • 0-50 kDa [28]
  • 50-100 kDa [47]
  • 100-250 kDa [326]
  • 250-500 kDa [323]
  • 500-1000 kDa [148]
  • 1-2 MDa [61]
  • 2-5 MDa [94]
  • 5-10 MDa [22]
  • > 10 MDa [17]

Release Date

  • 2026 [385]
  • 2025 [659]
  • 2024 [132]
  • 2023 [55]
  • 2022 [245]
  • 2021 [391]
  • 2020 [296]
  • 2019 [193]
  • 2018 [157]
  • 2017 [222]
  • 2016 [147]

Author by name

  • Wang J [99]
  • Wu M [92]
  • Brown A [91]
  • Beneke T [86]
  • Doran MH [86]
  • Fochler S [86]
  • Fort C [86]
  • Gluenz E [86]
  • Smith J [86]
  • Walker BJ [86]
  • Wheeler RJ [86]
  • Zhou L [83]
  • Briggs JAG [77]
  • Letts JA [77]
  • Guo R [76]
  • Yang Y [74]
  • Han F [72]
  • He Z [72]
  • Hu Y [72]
  • Hu YQ [72]
  • Tian H [72]
  • Lyumkis D [70]
  • Montgomery MG [70]
  • Spikes TE [70]
  • Walker JE [70]
  • Zhou J [70]
  • Jiang Y [69]
  • Xu C [68]
  • Yang F [68]
  • Zhang L [67]
  • Zhang S [66]
  • Teng F [65]
  • Zhou R [65]
  • Aricescu AR [62]
  • He ZX [61]
  • Williamson JR [61]
  • Mitsuoka K [57]
  • Nakano A [57]
  • Yokoyama K [57]
  • Guo RY [56]
  • Xu CY [56]
  • Wang Y [53]
  • Zhang X [49]
  • Mihaylov DB [46]
  • Kishikawa J [44]
  • Lu X [44]
  • Malinauskas T [44]
  • Plitzko JM [43]
  • Rabuck-gibbons JN [42]
  • Gerle C [41]
  • Li D [40]
  • Engel BD [37]
  • Kwong PD [37]
  • Wang X [36]
  • De Biasio A [35]
  • Edwards RJ [35]
  • Hamdan SM [35]
  • Li X [35]
  • Tehseen M [35]
  • Acharya P [34]
  • Haynes BF [34]
  • Janowska K [34]
  • Mansouri K [34]
  • Savva CG [34]
  • Shahid T [34]
  • Stalls V [34]
  • Alhudhali L [33]
  • Clark AR [33]
  • Danazumi AU [33]
  • Kato T [33]
  • Manne K [33]
  • Mascola JR [33]
  • Sempowski GD [33]
  • Walz T [33]
  • Deyton M [32]
  • Graham BS [32]
  • Murata K [32]
  • Petrova O [32]
  • Wiehe K [32]
  • Zhou T [32]
  • Baumeister W [31]
  • Feldman J [31]
  • Kravchuk V [31]
  • Schmidt AG [31]
  • Shigematsu H [31]
  • Yang X [31]
  • Alam SM [30]
  • Foulger A [30]
  • Gobeil SMC [30]
  • Hauser BM [30]
  • Kopp M [30]
  • Lu Y [30]
  • Montefiori DC [30]
  • Moody MA [30]
  • Parks R [30]
  • Potter CS [30]
  • Saunders KO [30]
  • Sazanov L [30]
  • Song C [30]
  • Carter AP [29]

Author by ORCID

  • Brown A [89]
  • Beneke T [85]
  • Wheeler RJ [85]
  • Doran MH [85]
  • Fort C [85]
  • Gluenz E [85]
  • Fochler S [85]
  • Montgomery MG [70]
  • Walker JE [70]
  • Spikes TE [70]
  • Letts JA [69]
  • Zhou L [67]
  • Teng F [64]
  • Zhou R [64]
  • Yang F [64]
  • Hu Y [64]
  • Wu M [64]
  • Zhou J [64]
  • Tian H [64]
  • Yang Y [64]
  • Zhang S [64]
  • Guo R [64]
  • He Z [64]
  • Han F [64]
  • Williamson JR [60]
  • Aricescu AR [58]
  • Yokoyama K [57]
  • Briggs JAG [52]
  • Malinauskas T [43]
  • Lyumkis D [43]
  • Mihaylov DB [43]
  • Rabuck-gibbons JN [42]
  • Mitsuoka K [42]
  • Gerle C [40]
  • Nakano A [39]
  • Kwong PD [36]
  • Hamdan SM [35]
  • Tehseen M [34]
  • Shahid T [34]
  • De Biasio A [34]
  • Alhudhali L [33]
  • Engel BD [33]
  • Clark AR [33]
  • Plitzko JM [33]
  • Walz T [33]
  • Danazumi AU [33]
  • Kravchuk V [31]
  • Edwards RJ [31]
  • Mansouri K [30]
  • Sazanov L [30]
  • Sempowski GD [30]
  • Shigematsu H [30]
  • Kishikawa JI [29]
  • Carter AP [28]
  • Brunger AT [27]
  • White KI [27]
  • Raunser S [27]
  • Gobeil SMC [27]
  • Balaji A [27]
  • Hauser BM [27]
  • Couoh-cardel S [27]
  • Hsu SD [27]
  • Draczkowski P [27]
  • Khan YA [27]
  • Plevka P [27]
  • Diao J [27]
  • Caradonna TM [26]
  • Tse LV [26]
  • Bock KW [26]
  • Macintyre AN [26]
  • Conway JF [26]
  • Tilahun K [26]
  • Kan Y [26]
  • Fuzik T [25]
  • Chang YC [23]
  • Wang YS [23]
  • Vonck J [22]
  • Murphy BJ [22]
  • Wu C [22]
  • Patel AB [22]
  • Park G [22]
  • Louder RK [22]
  • Watterson D [21]
  • Kuhlbrandt W [21]
  • Newton ND [21]
  • Amarilla AA [21]
  • Davis JH [21]
  • Hobson-peters J [21]
  • Modhiran N [21]
  • Briggs JA [21]
  • Nguyen THD [20]
  • Shima S [20]
  • Caston JR [20]
  • Kato T [19]
  • Chiu W [19]
  • Wan W [19]
  • Liang B [19]
  • Coulibaly F [19]
  • Wang JC [18]
  • Tan YZ [18]

Journal

  • NAT COMMUN [529]
  • TO BE PUBLISHED [323]
  • NATURE [254]
  • BIORXIV [249]
  • PNAS [246]
  • NAT STRUCT MOL BIOL [134]
  • SCI ADV [129]
  • STRUCTURE [124]
  • SCIENCE [114]
  • ELIFE [113]
  • CELL [111]
  • MOL CELL [68]
  • J MOL BIOL [41]
  • NUCLEIC ACIDS RES [40]
  • PLOS PATHOG [40]
  • J BIOL CHEM [32]
  • CELL REP [31]
  • J VIROL [31]
  • COMMUN BIOL [25]
  • NAT MICROBIOL [22]
  • EMBO J [20]
  • SCI REP [19]
  • CELL RES [17]
  • IUCRJ [15]
  • PROTEIN SCI [15]
  • J STRUCT BIOL [14]
  • ACS NANO [13]
  • CELL DEATH DIFFER. [13]
  • ACTA CRYSTALLOGR D STRUCT BIOL [12]
  • IMMUNITY [12]
  • NAT CHEM BIOL [11]
  • J CELL BIOL [10]
  • INT J MOL SCI [9]
  • MBIO [9]
  • NAT METHODS [9]
  • CELL DISCOV [7]
  • EMBO REP [7]
  • FEBS J [7]
  • NAT PLANTS [6]
  • PROG BIOPHYS MOL BIOL [6]
  • ANTIOXID REDOX SIGNAL [5]
  • PLOS BIOL [5]
  • VIROLOGY [5]
  • ADV SCI [4]
  • ANGEW CHEM INT ED ENGL [4]
  • HEMASPHERE [4]
  • J STRUCT BIOL X [4]
  • NPJ VIRUSES [4]
  • SCI TRANSL MED [4]
  • SMALL [4]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [3]
  • BIOMACROMOLECULES [3]
  • CELL HOST MICROBE [3]
  • INT J BIOL MACROMOL [3]
  • J CELL SCI [3]
  • J MOL CELL BIOL [3]
  • MICROORGANISMS [3]
  • OPEN BIOL [3]
  • VITA [3]
  • ACS CATAL [2]
  • ACS CHEM BIOL [2]
  • BIOCHIM BIOPHYS ACTA [2]
  • BIOPHYS J [2]
  • BR.J.PHARMACOL. [2]
  • ENVIRON SCI TECHNOL [2]
  • ISCIENCE [2]
  • J AM CHEM SOC [2]
  • J.BIOCHEM. [2]
  • MOL BIOL CELL [2]
  • MOL THER [2]
  • MSYSTEMS [2]
  • NANO LETTERS [2]
  • NANOSCALE [2]
  • NAT BIOTECHNOL [2]
  • NAT PROTOC [2]
  • PLOS COMPUT BIOL [2]
  • PLOS GENET [2]
  • PLOS ONE [2]
  • VIRUSES [2]
  • ACS INFECT DIS. [1]
  • ACS OMEGA [1]
  • ACS SYNTH BIOL [1]
  • ANTIVIRAL RES [1]
  • APPLIED CELL BIOLOGY [1]
  • ARCH VIROL [1]
  • BIOCHEM BIOPHYS RES COMMUN [1]
  • BIOCHEM J [1]
  • BIOCHEMISTRY [1]
  • BIOMATER SCI [1]
  • BIOMEDICINES [1]
  • BIOMOLECULES [1]
  • BIORVIX [1]
  • CELL CHEM BIOL [1]
  • CHEM COMMUN [1]
  • CHEM SCI [1]
  • CHEM.COMMUN.(CAMB.) [1]
  • CHEMPLUSCHEM [1]
  • COMMUN CHEM [1]
  • COMPUT CRYST NEWSL [1]
  • CURR OPIN STRUCT BIOL [1]

Software

  • CTFFIND [2791]
  • RELION [2140]
  • CRYOSPARC [730]
  • FREALIGN [110]
  • CTFFIND3 [62]
  • CTFPHASEFLIP [50]
  • IMOD [45]
  • GCTF [43]
  • CISTEM [42]
  • NOVACTF [36]
  • AV3 [34]
  • XMIPP [30]
  • COOT [27]
  • SPIDER [26]
  • CTFFIND4 [25]
  • TOM [25]
  • APPION [21]
  • UCSF CHIMERAX [21]
  • CRYOLO [20]
  • CTFTILT [20]
  • EMAN [20]
  • TOM TOOLBOX [20]
  • AUTO3DEM [19]
  • DYNAMO [18]
  • MATLAB [15]
  • EMAN2 [14]
  • PHENIX [14]
  • SPHIRE [13]
  • FREALIX [12]
  • PYTOM [12]
  • JSPR [11]
  • UCSF CHIMERA [10]
  • SCIPION [9]
  • STOPGAP [9]
  • WARP [7]
  • IMAGIC [6]
  • AMIRAFPM [5]
  • BSOFT [3]
  • CTFFIND3, LABEL AND SPIDER [3]
  • EMREADY [3]
  • TOPAZ [3]
  • ACE [2]
  • AMIRA [2]
  • EAMN [2]
  • EMAN BOXER [2]
  • EMCLARITY [2]
  • HSEARCH_LORENTZ [2]
  • IHRSR [2]
  • J3DR [2]
  • JALIGN [2]
  • MPSA [2]
  • SPARX [2]
  • ACE, CTFFIND3 [1]
  • APPION HELIX BOXER [1]
  • AUTO3DEM PO2R [1]
  • AUTO3DEM PPFT [1]
  • CRYODRGN2 [1]
  • E2BOXER [1]
  • E2HELIXBOXER.PY [1]
  • FOCUS [1]
  • IHRSH [1]
  • ISOLDE [1]
  • REION [1]
  • RELION2 [1]
  • SEGREFINETHREED [1]
  • SPDER [1]
  • SPRING [1]
  • STRUL [1]
  • SUBTOM [1]
  • SUPER-SAMPLING SART [1]

Microscope

  • FEI TITAN KRIOS [1404]
  • TFS KRIOS [834]
  • FEI TALOS ARCTICA [144]
  • FEI TECNAI F20 [78]
  • JEOL CRYO ARM 300 [76]
  • FEI POLARA 300 [63]
  • TFS GLACIOS [41]
  • FEI TECNAI F30 [34]
  • FEI/PHILIPS EM420 [30]
  • JEOL 2200FS [23]
  • FEI TECNAI ARCTICA [21]
  • FEI TECNAI SPIRIT [20]
  • FEI TITAN [15]
  • TFS TALOS [15]
  • JEOL 3200FSC [14]
  • JEOL 3200FS [12]
  • JEOL 2100 [11]
  • FEI TECNAI 20 [8]
  • JEOL 2100F [8]
  • JEOL CRYO ARM 200 [7]
  • FEI TECNAI 12 [6]
  • JEOL 2200FSC [4]
  • JEOL 1230 [3]
  • TFS TALOS F200C [3]
  • TFS TUNDRA [3]
  • FEI/PHILIPS CM200FEG [2]
  • JEOL 1400 [2]
  • JEOL 1200EXII [1]
  • SHUIMU TOTEM 300S [1]
  • TFS TALOS L120C [1]

Electron Source

  • FIELD EMISSION GUN [2790]
  • LAB6 [71]
  • OTHER [11]
  • TUNGSTEN HAIRPIN [10]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [760]
  • GATAN K3 6K X 4K [574]
  • GATAN K3 BIOQUANTUM 6K X 4K [373]
  • FEI FALCON IV 4K X 4K [266]
  • FEI FALCON III 4K X 4K [229]
  • GATAN K2 QUANTUM 4K X 4K [195]
  • FEI FALCON II 4K X 4K [168]
  • TFS FALCON 4I 4K X 4K [113]
  • OTHER [53]
  • GATAN ULTRASCAN 4000 4K X 4K [40]
  • DIRECT ELECTRON DE-20 5K X 3K [25]
  • TVIPS TEMCAM-F416 4K X 4K [25]
  • FEI EAGLE 4K X 4K [20]
  • KODAK SO-163 FILM [9]
  • FEI FALCON I 4K X 4K [7]
  • DIRECT ELECTRON DE-64 8K X 8K [6]
  • GATAN K2 BASE 4K X 4K [6]
  • GATAN K3 BIOCONTINUUM 6K X 4K [6]
  • FEI CETA 4K X 4K [5]
  • GATAN ULTRASCAN 1000 2K X 2K [3]
  • DIRECT ELECTRON DE-16 4K X 4K [2]
  • GATAN MULTISCAN [2]
  • TVIPS TEMCAM-F415 4K X 4K [2]
  • GATAN ORIUS SC200 2K X 2K [1]
  • GATAN ORIUS SC600 2.7K X 2.7K [1]
  • TVIPS TEMCAM-F816 8K X 8K [1]

External links

  • PDB [2696]
  • UniProt [1219]
  • AlphaFold DB [1125]
  • PDBe-Kb [1109]
  • Gene Ontology [872]
  • InterPro [853]
  • Pfam [809]
  • ChEBI [651]
  • ChEMBL [590]
  • DrugBank [585]
  • EMPIAR [381]
  • Complex Portal [317]
  • SCOP2 [21]
  • CATH [19]
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EMD-53928
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Cryo-EM structure of amyloidogenic antimicrobial peptide Aurein 1.2 polymorph 1 in acqueous solution
CryoEM
Release date: Aug. 26, 2026
Resolution: 2.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 9rd7
Q-score: 0.447
Similar entry percentile: 22%

Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M, Banerjee S

To Be Published

EMD-53942
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3D View
Cryo-EM structure of amyloidogenic antimicrobial peptide aurein 1.2 polymorph 2 in aqueous solution
CryoEM
Release date: Aug. 26, 2026
Resolution: 3.78 Å
EM Method: Helical reconstruction
Fitted PDBs: 9rfv
Q-score: 0.448
Similar entry percentile: 71%

Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M, Banerjee S

To Be Published

EMD-54645
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3D View
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 1 in water
CryoEM
Release date: Aug. 26, 2026
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 9s7o
Q-score: 0.453
Similar entry percentile: 46%

Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

To Be Published

EMD-54646
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3D View
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 1 in PBS pH 6.5
CryoEM
Release date: Aug. 26, 2026
Resolution: 2.17 Å
EM Method: Helical reconstruction
Fitted PDBs: 9s7p
Q-score: 0.611
Similar entry percentile: 54%

Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

To Be Published

EMD-54647
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3D View
Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 2 in PBS pH 6.5
CryoEM
Release date: Aug. 26, 2026
Resolution: 2.28 Å
EM Method: Helical reconstruction
Fitted PDBs: 9s7q
Q-score: 0.631
Similar entry percentile: 73%

Ragonis-Bachar P, Strati F, Gustavsson E, Khokhlov A, Barnea E, Rayan B, Upchr A, Landau M

To Be Published

EMD-55362
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Capsid structure of Lactococcus phage Nocturne116
CryoEM
Release date: Aug. 26, 2026
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 9sz9
Q-score: 0.666
Similar entry percentile: 97%

Rumnieks J, Tars K

To Be Published

EMD-55363
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Asymmetric structure of the capsid-portal complex of Lactococcus phage Nocturne116
CryoEM
Release date: Aug. 26, 2026
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 9sza
Q-score: 0.503
Similar entry percentile: 82%

Rumnieks J, Tars K

To Be Published

EMD-55366
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Tail structure of Lactococcus phage Nocturne116
CryoEM
Release date: Aug. 26, 2026
Resolution: 3.43 Å
EM Method: Helical reconstruction
Fitted PDBs: 9szd
Q-score: 0.52
Similar entry percentile: 85%

Rumnieks J, Tars K

To Be Published

EMD-55367
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Tail tip structure of Lactococcus phage Nocturne116
CryoEM
Release date: Aug. 26, 2026
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 9sze
Q-score: 0.575
Similar entry percentile: 90%

Rumnieks J, Tars K

To Be Published

EMD-55897
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3D View
DDK-salt stripped phosphorylated MCM2-7 DH
CryoEM
Release date: Aug. 26, 2026
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9tgd
Q-score: 0.506
Similar entry percentile: 72%

Noguchi Y, Saleh A, Schneider S, Ivanova ME, Chen ZA, Ranjha L, Aramayo R, Tognetti S, Faull SV, Rappsilber J, Speck C

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-76309-6 ]

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Current Database

  • EMDB [2882]

Current status

  • REL [2882]

Sample type

  • Complex [2390]
  • Protein [1556]
  • Ligand [811]
  • Virus [329]
  • RNA [210]
  • Cellular component [145]
  • DNA [132]
  • Cell [54]
  • Other [18]
  • Tissue [5]

Organism

  • Homo sapiens [676]
  • Escherichia coli [239]
  • Synthetic construct [152]
  • Bos taurus [140]
  • Saccharomyces cerevisiae [121]
  • Mus musculus [119]
  • Sus scrofa [88]
  • Leishmania tarentolae [86]
  • Severe acute respiratory syndrome coronavirus [82]
  • Saccharomyces cerevisiae [56]
  • Rattus norvegicus [52]
  • Thermus thermophilus [52]
  • Lama glama [46]
  • Human immunodeficiency virus 1 [45]
  • Chlamydomonas reinhardtii [45]
  • Escherichia coli [42]
  • Simian virus 40 [34]
  • Oryctolagus cuniculus [33]
  • Xenopus laevis [29]
  • Drosophila melanogaster [28]
  • Cricetulus griseus [26]
  • Chaetomium thermophilum [21]
  • Porphyridium purpureum [19]
  • Gallus gallus [19]
  • Hepatitis b virus [18]
  • Acetivibrio thermocellus [18]
  • Orthoflavivirus flavi [17]
  • Methanospirillum hungatei [17]
  • Escherichia coli [17]
  • Arabidopsis thaliana [16]
  • Human herpesvirus 1 [15]
  • Mycobacterium tuberculosis [14]
  • Escherichia coli [13]
  • Chikungunya virus [12]
  • Equus caballus [12]
  • Staphylococcus phage p68 [11]
  • Pseudomonas aeruginosa [11]
  • Squalus acanthias [11]
  • Human immunodeficiency virus [10]
  • Vigna radiata [10]
  • Pseudomonas aeruginosa [10]
  • Gloeobacter violaceus [10]
  • Yarrowia lipolytica [10]
  • Tetrahymena thermophila [10]
  • Influenza a virus [9]
  • Staphylococcus aureus [9]
  • Entamoeba histolytica [9]
  • Semliki forest virus [8]
  • Influenza d virus [8]
  • Brome mosaic virus [8]
  • Zaire ebolavirus [8]
  • Brevibacterium linens [8]
  • Pseudomonas virus pa223 [8]
  • Detrevirus d3 [8]
  • Babesia divergens [8]
  • Spinacia oleracea [8]
  • Norwalk virus [8]
  • Mycobacteroides abscessus [8]
  • 3683496 [8]
  • Schizosaccharomyces pombe [8]
  • Danio rerio [8]
  • Chaetoceros gracilis [7]
  • Porcine epidemic diarrhea virus [7]
  • Rhodospirillum rubrum [6]
  • Eastern equine encephalitis virus [6]
  • Orthoflavivirus encephalitidis [6]
  • Phomopsis amygdali [6]
  • Bacillus subtilis [6]
  • Salasvirus phi29 [6]
  • Rotavirus a [6]
  • Euglena gracilis [6]
  • Azotobacter vinelandii [6]
  • Escherichia coli [6]
  • Enterovirus b [6]
  • Macaca mulatta [6]
  • Hepatitis b virus [5]
  • Synechocystis sp. pcc 6803 [5]
  • Vibrio virus nt1 [5]
  • Norwalk virus [5]
  • Pseudomonas aeruginosa [5]
  • Thermus thermophilus [5]
  • Alkalihalobacillus halodurans [5]
  • Lactococcus phage nocturne116 [5]
  • Vicugna pacos [5]
  • Thermococcus profundus [5]
  • Caenorhabditis elegans [5]
  • Chaetomium thermophilum [5]
  • Strongylocentrotus purpuratus [5]
  • Haliangium ochraceum [5]
  • Mycobacterium tuberculosis [5]
  • Human herpesvirus 1 [4]
  • Cereibacter sphaeroides [4]
  • Enterobacteria phage t4 [4]
  • (no species) [4]
  • Orthoflavivirus louisense [4]
  • Influenza c virus [4]
  • Simian foamy virus [4]
  • Pseudomonas phage pp7 [4]
  • Desulfofustis sp. pb-srb1 [4]
  • Deltainfluenzavirus influenzae [4]

EM Method

  • Single-particle [2551]
  • Helical reconstruction [164]
  • Subtomogram averaging [133]
  • Tomography [34]

Resolution

  • < 2Å [28]
  • ≥ 2Å and < 3Å [501]
  • ≥ 3Å and < 4Å [1083]
  • ≥ 4Å and < 5Å [352]
  • ≥ 5Å and < 6Å [92]
  • ≥ 6Å and < 8Å [206]
  • ≥ 8Å and < 12Å [221]
  • ≥ 12Å and < 16Å [94]
  • ≥ 16Å and < 20Å [119]
  • ≥ 20Å and < 30Å [123]
  • ≥ 30Å [41]

Model molecular weight

  • 0-50 kDa [28]
  • 50-100 kDa [47]
  • 100-250 kDa [326]
  • 250-500 kDa [323]
  • 500-1000 kDa [148]
  • 1-2 MDa [61]
  • 2-5 MDa [94]
  • 5-10 MDa [22]
  • > 10 MDa [17]

Release Date

  • 2026 [385]
  • 2025 [659]
  • 2024 [132]
  • 2023 [55]
  • 2022 [245]
  • 2021 [391]
  • 2020 [296]
  • 2019 [193]
  • 2018 [157]
  • 2017 [222]
  • 2016 [147]

Author by name

  • Wang J [99]
  • Wu M [92]
  • Brown A [91]
  • Beneke T [86]
  • Doran MH [86]
  • Fochler S [86]
  • Fort C [86]
  • Gluenz E [86]
  • Smith J [86]
  • Walker BJ [86]
  • Wheeler RJ [86]
  • Zhou L [83]
  • Briggs JAG [77]
  • Letts JA [77]
  • Guo R [76]
  • Yang Y [74]
  • Han F [72]
  • He Z [72]
  • Hu Y [72]
  • Hu YQ [72]
  • Tian H [72]
  • Lyumkis D [70]
  • Montgomery MG [70]
  • Spikes TE [70]
  • Walker JE [70]
  • Zhou J [70]
  • Jiang Y [69]
  • Xu C [68]
  • Yang F [68]
  • Zhang L [67]
  • Zhang S [66]
  • Teng F [65]
  • Zhou R [65]
  • Aricescu AR [62]
  • He ZX [61]
  • Williamson JR [61]
  • Mitsuoka K [57]
  • Nakano A [57]
  • Yokoyama K [57]
  • Guo RY [56]
  • Xu CY [56]
  • Wang Y [53]
  • Zhang X [49]
  • Mihaylov DB [46]
  • Kishikawa J [44]
  • Lu X [44]
  • Malinauskas T [44]
  • Plitzko JM [43]
  • Rabuck-gibbons JN [42]
  • Gerle C [41]
  • Li D [40]
  • Engel BD [37]
  • Kwong PD [37]
  • Wang X [36]
  • De Biasio A [35]
  • Edwards RJ [35]
  • Hamdan SM [35]
  • Li X [35]
  • Tehseen M [35]
  • Acharya P [34]
  • Haynes BF [34]
  • Janowska K [34]
  • Mansouri K [34]
  • Savva CG [34]
  • Shahid T [34]
  • Stalls V [34]
  • Alhudhali L [33]
  • Clark AR [33]
  • Danazumi AU [33]
  • Kato T [33]
  • Manne K [33]
  • Mascola JR [33]
  • Sempowski GD [33]
  • Walz T [33]
  • Deyton M [32]
  • Graham BS [32]
  • Murata K [32]
  • Petrova O [32]
  • Wiehe K [32]
  • Zhou T [32]
  • Baumeister W [31]
  • Feldman J [31]
  • Kravchuk V [31]
  • Schmidt AG [31]
  • Shigematsu H [31]
  • Yang X [31]
  • Alam SM [30]
  • Foulger A [30]
  • Gobeil SMC [30]
  • Hauser BM [30]
  • Kopp M [30]
  • Lu Y [30]
  • Montefiori DC [30]
  • Moody MA [30]
  • Parks R [30]
  • Potter CS [30]
  • Saunders KO [30]
  • Sazanov L [30]
  • Song C [30]
  • Carter AP [29]

Author by ORCID

  • Brown A [89]
  • Beneke T [85]
  • Wheeler RJ [85]
  • Doran MH [85]
  • Fort C [85]
  • Gluenz E [85]
  • Fochler S [85]
  • Montgomery MG [70]
  • Walker JE [70]
  • Spikes TE [70]
  • Letts JA [69]
  • Zhou L [67]
  • Teng F [64]
  • Zhou R [64]
  • Yang F [64]
  • Hu Y [64]
  • Wu M [64]
  • Zhou J [64]
  • Tian H [64]
  • Yang Y [64]
  • Zhang S [64]
  • Guo R [64]
  • He Z [64]
  • Han F [64]
  • Williamson JR [60]
  • Aricescu AR [58]
  • Yokoyama K [57]
  • Briggs JAG [52]
  • Malinauskas T [43]
  • Lyumkis D [43]
  • Mihaylov DB [43]
  • Rabuck-gibbons JN [42]
  • Mitsuoka K [42]
  • Gerle C [40]
  • Nakano A [39]
  • Kwong PD [36]
  • Hamdan SM [35]
  • Tehseen M [34]
  • Shahid T [34]
  • De Biasio A [34]
  • Alhudhali L [33]
  • Engel BD [33]
  • Clark AR [33]
  • Plitzko JM [33]
  • Walz T [33]
  • Danazumi AU [33]
  • Kravchuk V [31]
  • Edwards RJ [31]
  • Mansouri K [30]
  • Sazanov L [30]
  • Sempowski GD [30]
  • Shigematsu H [30]
  • Kishikawa JI [29]
  • Carter AP [28]
  • Brunger AT [27]
  • White KI [27]
  • Raunser S [27]
  • Gobeil SMC [27]
  • Balaji A [27]
  • Hauser BM [27]
  • Couoh-cardel S [27]
  • Hsu SD [27]
  • Draczkowski P [27]
  • Khan YA [27]
  • Plevka P [27]
  • Diao J [27]
  • Caradonna TM [26]
  • Tse LV [26]
  • Bock KW [26]
  • Macintyre AN [26]
  • Conway JF [26]
  • Tilahun K [26]
  • Kan Y [26]
  • Fuzik T [25]
  • Chang YC [23]
  • Wang YS [23]
  • Vonck J [22]
  • Murphy BJ [22]
  • Wu C [22]
  • Patel AB [22]
  • Park G [22]
  • Louder RK [22]
  • Watterson D [21]
  • Kuhlbrandt W [21]
  • Newton ND [21]
  • Amarilla AA [21]
  • Davis JH [21]
  • Hobson-peters J [21]
  • Modhiran N [21]
  • Briggs JA [21]
  • Nguyen THD [20]
  • Shima S [20]
  • Caston JR [20]
  • Kato T [19]
  • Chiu W [19]
  • Wan W [19]
  • Liang B [19]
  • Coulibaly F [19]
  • Wang JC [18]
  • Tan YZ [18]

Journal

  • NAT COMMUN [529]
  • TO BE PUBLISHED [323]
  • NATURE [254]
  • BIORXIV [249]
  • PNAS [246]
  • NAT STRUCT MOL BIOL [134]
  • SCI ADV [129]
  • STRUCTURE [124]
  • SCIENCE [114]
  • ELIFE [113]
  • CELL [111]
  • MOL CELL [68]
  • J MOL BIOL [41]
  • NUCLEIC ACIDS RES [40]
  • PLOS PATHOG [40]
  • J BIOL CHEM [32]
  • CELL REP [31]
  • J VIROL [31]
  • COMMUN BIOL [25]
  • NAT MICROBIOL [22]
  • EMBO J [20]
  • SCI REP [19]
  • CELL RES [17]
  • IUCRJ [15]
  • PROTEIN SCI [15]
  • J STRUCT BIOL [14]
  • ACS NANO [13]
  • CELL DEATH DIFFER. [13]
  • ACTA CRYSTALLOGR D STRUCT BIOL [12]
  • IMMUNITY [12]
  • NAT CHEM BIOL [11]
  • J CELL BIOL [10]
  • INT J MOL SCI [9]
  • MBIO [9]
  • NAT METHODS [9]
  • CELL DISCOV [7]
  • EMBO REP [7]
  • FEBS J [7]
  • NAT PLANTS [6]
  • PROG BIOPHYS MOL BIOL [6]
  • ANTIOXID REDOX SIGNAL [5]
  • PLOS BIOL [5]
  • VIROLOGY [5]
  • ADV SCI [4]
  • ANGEW CHEM INT ED ENGL [4]
  • HEMASPHERE [4]
  • J STRUCT BIOL X [4]
  • NPJ VIRUSES [4]
  • SCI TRANSL MED [4]
  • SMALL [4]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [3]
  • BIOMACROMOLECULES [3]
  • CELL HOST MICROBE [3]
  • INT J BIOL MACROMOL [3]
  • J CELL SCI [3]
  • J MOL CELL BIOL [3]
  • MICROORGANISMS [3]
  • OPEN BIOL [3]
  • VITA [3]
  • ACS CATAL [2]
  • ACS CHEM BIOL [2]
  • BIOCHIM BIOPHYS ACTA [2]
  • BIOPHYS J [2]
  • BR.J.PHARMACOL. [2]
  • ENVIRON SCI TECHNOL [2]
  • ISCIENCE [2]
  • J AM CHEM SOC [2]
  • J.BIOCHEM. [2]
  • MOL BIOL CELL [2]
  • MOL THER [2]
  • MSYSTEMS [2]
  • NANO LETTERS [2]
  • NANOSCALE [2]
  • NAT BIOTECHNOL [2]
  • NAT PROTOC [2]
  • PLOS COMPUT BIOL [2]
  • PLOS GENET [2]
  • PLOS ONE [2]
  • VIRUSES [2]
  • ACS INFECT DIS. [1]
  • ACS OMEGA [1]
  • ACS SYNTH BIOL [1]
  • ANTIVIRAL RES [1]
  • APPLIED CELL BIOLOGY [1]
  • ARCH VIROL [1]
  • BIOCHEM BIOPHYS RES COMMUN [1]
  • BIOCHEM J [1]
  • BIOCHEMISTRY [1]
  • BIOMATER SCI [1]
  • BIOMEDICINES [1]
  • BIOMOLECULES [1]
  • BIORVIX [1]
  • CELL CHEM BIOL [1]
  • CHEM COMMUN [1]
  • CHEM SCI [1]
  • CHEM.COMMUN.(CAMB.) [1]
  • CHEMPLUSCHEM [1]
  • COMMUN CHEM [1]
  • COMPUT CRYST NEWSL [1]
  • CURR OPIN STRUCT BIOL [1]

Software

  • CTFFIND [2791]
  • RELION [2140]
  • CRYOSPARC [730]
  • FREALIGN [110]
  • CTFFIND3 [62]
  • CTFPHASEFLIP [50]
  • IMOD [45]
  • GCTF [43]
  • CISTEM [42]
  • NOVACTF [36]
  • AV3 [34]
  • XMIPP [30]
  • COOT [27]
  • SPIDER [26]
  • CTFFIND4 [25]
  • TOM [25]
  • APPION [21]
  • UCSF CHIMERAX [21]
  • CRYOLO [20]
  • CTFTILT [20]
  • EMAN [20]
  • TOM TOOLBOX [20]
  • AUTO3DEM [19]
  • DYNAMO [18]
  • MATLAB [15]
  • EMAN2 [14]
  • PHENIX [14]
  • SPHIRE [13]
  • FREALIX [12]
  • PYTOM [12]
  • JSPR [11]
  • UCSF CHIMERA [10]
  • SCIPION [9]
  • STOPGAP [9]
  • WARP [7]
  • IMAGIC [6]
  • AMIRAFPM [5]
  • BSOFT [3]
  • CTFFIND3, LABEL AND SPIDER [3]
  • EMREADY [3]
  • TOPAZ [3]
  • ACE [2]
  • AMIRA [2]
  • EAMN [2]
  • EMAN BOXER [2]
  • EMCLARITY [2]
  • HSEARCH_LORENTZ [2]
  • IHRSR [2]
  • J3DR [2]
  • JALIGN [2]
  • MPSA [2]
  • SPARX [2]
  • ACE, CTFFIND3 [1]
  • APPION HELIX BOXER [1]
  • AUTO3DEM PO2R [1]
  • AUTO3DEM PPFT [1]
  • CRYODRGN2 [1]
  • E2BOXER [1]
  • E2HELIXBOXER.PY [1]
  • FOCUS [1]
  • IHRSH [1]
  • ISOLDE [1]
  • REION [1]
  • RELION2 [1]
  • SEGREFINETHREED [1]
  • SPDER [1]
  • SPRING [1]
  • STRUL [1]
  • SUBTOM [1]
  • SUPER-SAMPLING SART [1]

Microscope

  • FEI TITAN KRIOS [1404]
  • TFS KRIOS [834]
  • FEI TALOS ARCTICA [144]
  • FEI TECNAI F20 [78]
  • JEOL CRYO ARM 300 [76]
  • FEI POLARA 300 [63]
  • TFS GLACIOS [41]
  • FEI TECNAI F30 [34]
  • FEI/PHILIPS EM420 [30]
  • JEOL 2200FS [23]
  • FEI TECNAI ARCTICA [21]
  • FEI TECNAI SPIRIT [20]
  • FEI TITAN [15]
  • TFS TALOS [15]
  • JEOL 3200FSC [14]
  • JEOL 3200FS [12]
  • JEOL 2100 [11]
  • FEI TECNAI 20 [8]
  • JEOL 2100F [8]
  • JEOL CRYO ARM 200 [7]
  • FEI TECNAI 12 [6]
  • JEOL 2200FSC [4]
  • JEOL 1230 [3]
  • TFS TALOS F200C [3]
  • TFS TUNDRA [3]
  • FEI/PHILIPS CM200FEG [2]
  • JEOL 1400 [2]
  • JEOL 1200EXII [1]
  • SHUIMU TOTEM 300S [1]
  • TFS TALOS L120C [1]

Electron Source

  • FIELD EMISSION GUN [2790]
  • LAB6 [71]
  • OTHER [11]
  • TUNGSTEN HAIRPIN [10]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [760]
  • GATAN K3 6K X 4K [574]
  • GATAN K3 BIOQUANTUM 6K X 4K [373]
  • FEI FALCON IV 4K X 4K [266]
  • FEI FALCON III 4K X 4K [229]
  • GATAN K2 QUANTUM 4K X 4K [195]
  • FEI FALCON II 4K X 4K [168]
  • TFS FALCON 4I 4K X 4K [113]
  • OTHER [53]
  • GATAN ULTRASCAN 4000 4K X 4K [40]
  • DIRECT ELECTRON DE-20 5K X 3K [25]
  • TVIPS TEMCAM-F416 4K X 4K [25]
  • FEI EAGLE 4K X 4K [20]
  • KODAK SO-163 FILM [9]
  • FEI FALCON I 4K X 4K [7]
  • DIRECT ELECTRON DE-64 8K X 8K [6]
  • GATAN K2 BASE 4K X 4K [6]
  • GATAN K3 BIOCONTINUUM 6K X 4K [6]
  • FEI CETA 4K X 4K [5]
  • GATAN ULTRASCAN 1000 2K X 2K [3]
  • DIRECT ELECTRON DE-16 4K X 4K [2]
  • GATAN MULTISCAN [2]
  • TVIPS TEMCAM-F415 4K X 4K [2]
  • GATAN ORIUS SC200 2K X 2K [1]
  • GATAN ORIUS SC600 2.7K X 2.7K [1]
  • TVIPS TEMCAM-F816 8K X 8K [1]

External links

  • PDB [2696]
  • UniProt [1219]
  • AlphaFold DB [1125]
  • PDBe-Kb [1109]
  • Gene Ontology [872]
  • InterPro [853]
  • Pfam [809]
  • ChEBI [651]
  • ChEMBL [590]
  • DrugBank [585]
  • EMPIAR [381]
  • Complex Portal [317]
  • SCOP2 [21]
  • CATH [19]