Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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Current Database

  • EMDB [24]

Current status

  • REL [24]

Sample type

  • Complex [22]
  • Protein [18]
  • RNA [6]
  • Ligand [5]
  • DNA [3]
  • Cellular component [2]

Organism

  • Homo sapiens [5]
  • Escherichia coli [4]
  • (no species) [3]
  • Bacillus subtilis [3]
  • Saccharomyces cerevisiae [2]
  • Saccharomyces cerevisiae [2]
  • Tetrahymena thermophila [2]
  • Escherichia coli [2]
  • Rattus norvegicus [1]
  • Influenza a virus [1]
  • Human immunodeficiency virus 1 [1]
  • Escherichia coli [1]
  • Caenorhabditis elegans [1]
  • Pseudomonas aeruginosa [1]
  • Haemophilus influenzae [1]
  • Danio rerio [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [24]

Resolution

  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [5]
  • ≥ 8Å and < 12Å [6]
  • ≥ 12Å and < 16Å [2]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [1]
  • 2-5 MDa [2]

Release Date

  • 2018 [3]
  • 2017 [14]
  • 2016 [7]

Author by name

  • Chen J [7]
  • Camp AH [3]
  • Campbell EA [3]
  • Cao E [3]
  • Chait BT [3]
  • Darst SA [3]
  • Flanagan KA [3]
  • Gottesman ME [3]
  • Hong C [3]
  • Huang RK [3]
  • Kang JY [3]
  • Massoni SC [3]
  • Mustaev A [3]
  • Olinares PD [3]
  • Strynadka NC [3]
  • Strynadka NCJ [3]
  • Theiltges KA [3]
  • Vuckovic M [3]
  • Worrall LJ [3]
  • Yu Z [3]
  • Zeytuni N [3]
  • An W [2]
  • Basu K [2]
  • Benlekbir S [2]
  • Bueler SA [2]
  • Bui KH [2]
  • Bulkley D [2]
  • Chen R [2]
  • Chen X [2]
  • Chowdhury S [2]
  • Clapham DE [2]
  • Decaen PG [2]
  • Dong MQ [2]
  • Hsu TC [2]
  • Ichikawa M [2]
  • Kastritis PL [2]
  • Lan P [2]
  • Lander GC [2]
  • Liu D [2]
  • Liu X [2]
  • Mazhab-jafari MT [2]
  • Qi J [2]
  • Robinson C [2]
  • Robinson CV [2]
  • Rohou A [2]
  • Rubinstein JL [2]
  • Schmidt C [2]
  • Shen PS [2]
  • Sun Q [2]
  • Tan D [2]
  • Wang B [2]
  • Yang S [2]
  • Yang X [2]
  • Ye K [2]
  • Zhang C [2]
  • Zhang W [2]
  • Zhang Z [2]
  • Zheng S [2]
  • Zhu X [2]
  • Ambrozak DR [1]
  • Andersen H [1]
  • Andrews SF [1]
  • Barrero D [1]
  • Baxa U [1]
  • Bhabha G [1]
  • Bochman ML [1]
  • Bondy-denomy J [1]
  • Boyoglu-barnum S [1]
  • Carter J [1]
  • Chang JY [1]
  • Chen DH [1]
  • Chen K-C [1]
  • Cheng Y [1]
  • Coey AT [1]
  • Cox JS [1]
  • Creanga A [1]
  • Cui Z [1]
  • Dalia AB [1]
  • Dalia TN [1]
  • Ekiert DC [1]
  • Fisher BE [1]
  • Gallagher JR [1]
  • Gao Y [1]
  • Georgiev IS [1]
  • Gillespie RA [1]
  • Golden MS [1]
  • Golden SM [1]
  • Gorzelnik KV [1]
  • Graham BS [1]
  • Greenan G [1]
  • Harris AK [1]
  • Henderson IR [1]
  • Isom GL [1]
  • Jakana J [1]
  • Joyce MG [1]
  • Julius D [1]
  • Kanekiyo M [1]
  • Kappel K [1]
  • Kelly JW [1]
  • Kong WP [1]

Author by ORCID

  • Campbell EA [3]
  • Chen J [3]
  • Olinares PD [3]
  • Zeytuni N [3]
  • Darst SA [3]
  • Ye K [2]
  • Robinson CV [2]
  • Schmidt C [2]
  • Kastritis PL [2]
  • Bulkley D [2]
  • Clapham DE [2]
  • Ichikawa M [2]
  • Dong MQ [2]
  • Shen PS [2]
  • Mazhab-jafari MT [2]
  • Wang B [2]
  • Rubinstein JL [2]
  • Bui KH [2]
  • Zhu X [2]
  • Kanekiyo M [1]
  • Wang JC [1]
  • Young R [1]
  • Chowdhury S [1]
  • Graham BS [1]
  • Wilkinson RA [1]
  • Isom GL [1]
  • Cheng Y [1]
  • Zuo X [1]
  • Gallagher JR [1]
  • Prabhakaran MS [1]
  • Kappel K [1]
  • Bochman ML [1]
  • Larsen KP [1]
  • Piszczek G [1]
  • Wheatley AK [1]
  • Joyce MG [1]
  • Baxa U [1]
  • Zhang J [1]
  • Harris AK [1]
  • Carter J [1]
  • Zehr E [1]
  • Henderson IR [1]
  • Gorzelnik KV [1]
  • Skiniotis G [1]
  • Mcdermott AB [1]
  • Andersen H [1]
  • Gao Y [1]
  • Cui Z [1]
  • Roll-mecak A [1]
  • Ovchinnikov S [1]
  • Kwong PD [1]
  • Mathiharan YK [1]

Journal

  • CELL [5]
  • ELIFE [5]
  • PNAS [5]
  • NATURE [4]
  • NAT COMMUN [2]
  • NAT IMMUNOL [1]
  • NAT STRUCT MOL BIOL [1]
  • NUCLEIC ACIDS RES [1]

Software

  • CTFFIND4 [24]
  • RELION [20]
  • FREALIGN [2]
  • SPIDER [2]
  • RELION2 [1]

Microscope

  • FEI TITAN KRIOS [17]
  • FEI TECNAI F20 [3]
  • FEI POLARA 300 [1]
  • FEI TECNAI 12 [1]
  • FEI TECNAI SPIRIT [1]
  • JEOL 3200FS [1]

Electron Source

  • FIELD EMISSION GUN [22]
  • LAB6 [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [16]
  • FEI FALCON II 4K X 4K [3]
  • OTHER [2]
  • TVIPS TEMCAM-F416 4K X 4K [2]
  • GATAN ULTRASCAN 4000 4K X 4K [1]

External links

  • AlphaFold DB [11]
  • PDBe-Kb [11]
  • UniProt [11]
  • PDB [8]
  • ChEBI [5]
  • ChEMBL [5]
  • Complex Portal [5]
  • Gene Ontology [5]
  • InterPro [5]
  • Pfam [5]
  • DrugBank [4]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 24. Page 1 of 3
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EMD-7021
Download Map
3D View
Structure of influenza hemagglutinin from A/New Caledonia/20/99 in complex with FAB 441D6.
Release date: Nov. 21, 2018
Resolution: 8.0 Å
EM Method: Single-particle

Kanekiyo M, Joyce MG, Gillespie RA, Gallagher JR, Andrews SF, Yassine HM, Wheatley AK, Fisher BE, Ambrozak DR, Creanga A, Leung K, Yang ES, Boyoglu-Barnum S, Georgiev IS, Tsybovsky Y, Prabhakaran MS, Andersen H, Kong WP, Baxa U, Zephir KL, Ledgerwood JE, Koup RA, Kwong PD, Harris AK, McDermott AB, Mascola JR, Graham BS

Nat Immunol (2019) 20 pp. 362-372 [ Pubmed: 30742080 DOI: doi:10.1038/s41590-018-0305-x ]

EMD-7032
Download Map
3D View
Global architecture of the HIV-1 reverse transcriptase initiation complex
Release date: May 2, 2018
Resolution: 8.0 Å
EM Method: Single-particle

Larsen KP, Mathiharan YK, Kappel K, Coey AT, Chen DH, Barrero D, Madigan L, Puglisi JD, Skiniotis G, Puglisi EV

Nature (2018) 557 pp. 118-122 [ DOI: doi:10.1038/s41586-018-0055-9 Pubmed: 29695867 ]

EMD-8575
Download Map
3D View
Negative stain 3D reconstruction of hexameric ComM in the presence of ATP and ssDNA
Release date: Jan. 24, 2018
Resolution: 13.8 Å
EM Method: Single-particle

Nero TM, Dalia TN, Wang JC, Kysela DT, Bochman ML, Dalia AB

Nucleic Acids Res (2018) 46 pp. 6099-6111 [ DOI: doi:10.1093/nar/gky343 Pubmed: 29722872 ]

EMD-8797
Download Map
3D View
SpoIIIAG 83-229
Release date: Aug. 16, 2017
Resolution: 3.9 Å
EM Method: Single-particle

Zeytuni N, Hong C, Flanagan KA, Worrall LJ, Theiltges KA, Vuckovic M, Huang RK, Massoni SC, Camp AH, Yu Z, Strynadka NC

PNAS (2017) 114 pp. E7073-E7081 [ DOI: doi:10.1073/pnas.1704310114 Pubmed: 28784753 ]

EMD-8798
Download Map
3D View
SpoIIIAG 55-229
Release date: Aug. 16, 2017
Resolution: 6.0 Å
EM Method: Single-particle

Zeytuni N, Hong C, Flanagan KA, Worrall LJ, Theiltges KA, Vuckovic M, Huang RK, Massoni SC, Camp AH, Yu Z, Strynadka NC

PNAS (2017) 114 pp. E7073-E7081 [ DOI: doi:10.1073/pnas.1704310114 Pubmed: 28784753 ]

EMD-8800
Download Map
3D View
SpoIIIAG
Release date: Aug. 16, 2017
Resolution: 6.1 Å
EM Method: Single-particle

Zeytuni N, Hong C, Flanagan KA, Worrall LJ, Theiltges KA, Vuckovic M, Huang RK, Massoni SC, Camp AH, Yu Z, Strynadka NC

PNAS (2017) 114 pp. E7073-E7081 [ DOI: doi:10.1073/pnas.1704310114 Pubmed: 28784753 ]

EMD-8796
Download Map
3D View
Katanin hexamer in the ring conformation
Release date: Aug. 9, 2017
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 5wcb
Q-score: 0.232

Zehr E, Szyk A, Piszczek G, Szczesna E, Zuo X, Roll-Mecak A

Nat Struct Mol Biol (2017) 24 pp. 717-725 [ Pubmed: 28783150 DOI: doi:10.1038/nsmb.3448 ]

EMD-8707
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3D View
Negative stain reconstruction of Endoplasmic Reticulum HSP40 co-chaperone native ERdj3 tetramer.
Release date: May 24, 2017
Resolution: 16.9 Å
EM Method: Single-particle

Cui Z, Gorzelnik KV, Chang JY, Langlais C, Jakana J, Young R, Zhang J

PNAS (2017) 114 pp. 11697-11702 [ Pubmed: 29078304 DOI: doi:10.1073/pnas.1707102114 ]

EMD-8532
Download Map
3D View
Cryo-EM structure of 16nm repeat ciliary microtubule doublet
Release date: May 10, 2017
Resolution: 6.2 Å
EM Method: Single-particle

Ichikawa M, Liu D, Kastritis PL, Basu K, Hsu TC, Yang S, Bui KH

Nat Commun (2017) 8 pp. 15035-15035 [ Pubmed: 28462916 DOI: doi:10.1038/ncomms15035 ]

EMD-8537
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3D View
Cryo-EM structure of 48nm repeat ciliary microtubule doublet
Release date: May 10, 2017
Resolution: 8.6 Å
EM Method: Single-particle

Ichikawa M, Liu D, Kastritis PL, Basu K, Hsu TC, Yang S, Bui KH

Nat Commun (2017) 8 pp. 15035-15035 [ Pubmed: 28462916 DOI: doi:10.1038/ncomms15035 ]

Sort by: Download
Showing 1 - 10 of 24. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [24]

Current status

  • REL [24]

Sample type

  • Complex [22]
  • Protein [18]
  • RNA [6]
  • Ligand [5]
  • DNA [3]
  • Cellular component [2]

Organism

  • Homo sapiens [5]
  • Escherichia coli [4]
  • (no species) [3]
  • Bacillus subtilis [3]
  • Saccharomyces cerevisiae [2]
  • Saccharomyces cerevisiae [2]
  • Tetrahymena thermophila [2]
  • Escherichia coli [2]
  • Rattus norvegicus [1]
  • Influenza a virus [1]
  • Human immunodeficiency virus 1 [1]
  • Escherichia coli [1]
  • Caenorhabditis elegans [1]
  • Pseudomonas aeruginosa [1]
  • Haemophilus influenzae [1]
  • Danio rerio [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [24]

Resolution

  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [5]
  • ≥ 8Å and < 12Å [6]
  • ≥ 12Å and < 16Å [2]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [1]
  • 2-5 MDa [2]

Release Date

  • 2018 [3]
  • 2017 [14]
  • 2016 [7]

Author by name

  • Chen J [7]
  • Camp AH [3]
  • Campbell EA [3]
  • Cao E [3]
  • Chait BT [3]
  • Darst SA [3]
  • Flanagan KA [3]
  • Gottesman ME [3]
  • Hong C [3]
  • Huang RK [3]
  • Kang JY [3]
  • Massoni SC [3]
  • Mustaev A [3]
  • Olinares PD [3]
  • Strynadka NC [3]
  • Strynadka NCJ [3]
  • Theiltges KA [3]
  • Vuckovic M [3]
  • Worrall LJ [3]
  • Yu Z [3]
  • Zeytuni N [3]
  • An W [2]
  • Basu K [2]
  • Benlekbir S [2]
  • Bueler SA [2]
  • Bui KH [2]
  • Bulkley D [2]
  • Chen R [2]
  • Chen X [2]
  • Chowdhury S [2]
  • Clapham DE [2]
  • Decaen PG [2]
  • Dong MQ [2]
  • Hsu TC [2]
  • Ichikawa M [2]
  • Kastritis PL [2]
  • Lan P [2]
  • Lander GC [2]
  • Liu D [2]
  • Liu X [2]
  • Mazhab-jafari MT [2]
  • Qi J [2]
  • Robinson C [2]
  • Robinson CV [2]
  • Rohou A [2]
  • Rubinstein JL [2]
  • Schmidt C [2]
  • Shen PS [2]
  • Sun Q [2]
  • Tan D [2]
  • Wang B [2]
  • Yang S [2]
  • Yang X [2]
  • Ye K [2]
  • Zhang C [2]
  • Zhang W [2]
  • Zhang Z [2]
  • Zheng S [2]
  • Zhu X [2]
  • Ambrozak DR [1]
  • Andersen H [1]
  • Andrews SF [1]
  • Barrero D [1]
  • Baxa U [1]
  • Bhabha G [1]
  • Bochman ML [1]
  • Bondy-denomy J [1]
  • Boyoglu-barnum S [1]
  • Carter J [1]
  • Chang JY [1]
  • Chen DH [1]
  • Chen K-C [1]
  • Cheng Y [1]
  • Coey AT [1]
  • Cox JS [1]
  • Creanga A [1]
  • Cui Z [1]
  • Dalia AB [1]
  • Dalia TN [1]
  • Ekiert DC [1]
  • Fisher BE [1]
  • Gallagher JR [1]
  • Gao Y [1]
  • Georgiev IS [1]
  • Gillespie RA [1]
  • Golden MS [1]
  • Golden SM [1]
  • Gorzelnik KV [1]
  • Graham BS [1]
  • Greenan G [1]
  • Harris AK [1]
  • Henderson IR [1]
  • Isom GL [1]
  • Jakana J [1]
  • Joyce MG [1]
  • Julius D [1]
  • Kanekiyo M [1]
  • Kappel K [1]
  • Kelly JW [1]
  • Kong WP [1]

Author by ORCID

  • Campbell EA [3]
  • Chen J [3]
  • Olinares PD [3]
  • Zeytuni N [3]
  • Darst SA [3]
  • Ye K [2]
  • Robinson CV [2]
  • Schmidt C [2]
  • Kastritis PL [2]
  • Bulkley D [2]
  • Clapham DE [2]
  • Ichikawa M [2]
  • Dong MQ [2]
  • Shen PS [2]
  • Mazhab-jafari MT [2]
  • Wang B [2]
  • Rubinstein JL [2]
  • Bui KH [2]
  • Zhu X [2]
  • Kanekiyo M [1]
  • Wang JC [1]
  • Young R [1]
  • Chowdhury S [1]
  • Graham BS [1]
  • Wilkinson RA [1]
  • Isom GL [1]
  • Cheng Y [1]
  • Zuo X [1]
  • Gallagher JR [1]
  • Prabhakaran MS [1]
  • Kappel K [1]
  • Bochman ML [1]
  • Larsen KP [1]
  • Piszczek G [1]
  • Wheatley AK [1]
  • Joyce MG [1]
  • Baxa U [1]
  • Zhang J [1]
  • Harris AK [1]
  • Carter J [1]
  • Zehr E [1]
  • Henderson IR [1]
  • Gorzelnik KV [1]
  • Skiniotis G [1]
  • Mcdermott AB [1]
  • Andersen H [1]
  • Gao Y [1]
  • Cui Z [1]
  • Roll-mecak A [1]
  • Ovchinnikov S [1]
  • Kwong PD [1]
  • Mathiharan YK [1]

Journal

  • CELL [5]
  • ELIFE [5]
  • PNAS [5]
  • NATURE [4]
  • NAT COMMUN [2]
  • NAT IMMUNOL [1]
  • NAT STRUCT MOL BIOL [1]
  • NUCLEIC ACIDS RES [1]

Software

  • CTFFIND4 [24]
  • RELION [20]
  • FREALIGN [2]
  • SPIDER [2]
  • RELION2 [1]

Microscope

  • FEI TITAN KRIOS [17]
  • FEI TECNAI F20 [3]
  • FEI POLARA 300 [1]
  • FEI TECNAI 12 [1]
  • FEI TECNAI SPIRIT [1]
  • JEOL 3200FS [1]

Electron Source

  • FIELD EMISSION GUN [22]
  • LAB6 [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [16]
  • FEI FALCON II 4K X 4K [3]
  • OTHER [2]
  • TVIPS TEMCAM-F416 4K X 4K [2]
  • GATAN ULTRASCAN 4000 4K X 4K [1]

External links

  • AlphaFold DB [11]
  • PDBe-Kb [11]
  • UniProt [11]
  • PDB [8]
  • ChEBI [5]
  • ChEMBL [5]
  • Complex Portal [5]
  • Gene Ontology [5]
  • InterPro [5]
  • Pfam [5]
  • DrugBank [4]
  • SCOP2 [1]