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Filter By

Current Database

  • EMDB [57]

Current status

  • REL [57]

Sample type

  • Sample [57]
  • Protein [37]
  • Virus [14]
  • Complex [6]
  • Cellular component [5]
  • DNA [2]
  • RNA [2]

Organism

  • Homo sapiens [9]
  • Escherichia coli [7]
  • Pseudomonas phage phi6 [4]
  • Danio rerio [4]
  • Cypovirus 1 [3]
  • Bos taurus [3]
  • Mus musculus [2]
  • Thermoplasma acidophilum [2]
  • Oryctolagus cuniculus [2]
  • Rattus norvegicus [1]
  • Salmonella phage p22 [1]
  • Vesicular stomatitis virus [1]
  • Simian immunodeficiency virus [1]
  • Murine leukemia virus [1]
  • Rous sarcoma virus [1]
  • Pseudomonas virus phi8 [1]
  • Penicillium chrysogenum virus [1]
  • Parechovirus b [1]
  • Methanothermobacter thermautotrophicus [1]
  • Methanocaldococcus jannaschii [1]
  • Human mastadenovirus c [1]
  • Thermus thermophilus [1]
  • Synthetic construct [1]
  • Haloarcula hispanica virus sh1 [1]
  • (no species) [1]
  • Schizosaccharomyces pombe [1]
  • Saccharomyces cerevisiae [1]
  • Lumbricus terrestris [1]
  • Sus scrofa [1]
  • Ovis aries [1]

EM Method

  • Single-particle [47]
  • Subtomogram averaging [5]
  • Electron Crystallography [2]
  • Tomography [2]
  • Helical reconstruction [1]

Resolution

  • < 2Å [1]
  • ≥ 3Å and < 4Å [11]
  • ≥ 4Å and < 5Å [4]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [9]
  • ≥ 8Å and < 12Å [13]
  • ≥ 12Å and < 16Å [6]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [6]
  • ≥ 30Å [4]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [4]
  • 250-500 kDa [10]
  • 500-1000 kDa [1]
  • 1-2 MDa [5]
  • 2-5 MDa [3]
  • 5-10 MDa [2]
  • > 10 MDa [3]

Release Date

  • 2017 [1]
  • 2016 [9]
  • 2015 [19]
  • 2014 [6]
  • 2013 [6]
  • 2012 [5]
  • 2011 [1]
  • 2010 [3]
  • 2009 [1]
  • 2008 [1]
  • 2007 [1]
  • 2006 [3]
  • 2002 [1]

Author by name

  • Huiskonen JT [6]
  • Kotecha A [5]
  • Stuart DI [5]
  • Akey CW [4]
  • Chambers MG [4]
  • Fu T [4]
  • Fu TM [4]
  • Ilca S [4]
  • Ilca SL [4]
  • Liao M [4]
  • Ludtke SJ [4]
  • Poranen MP [4]
  • Ru H [4]
  • Sun X [4]
  • Tong AB [4]
  • Wu H [4]
  • Aebersold R [3]
  • Baumeister W [3]
  • Butcher SJ [3]
  • Cheng L [3]
  • Conrad J [3]
  • Fernandez-leiro R [3]
  • Fuller SD [3]
  • Gumbart JC [3]
  • Lamers MH [3]
  • Li W [3]
  • Liu H [3]
  • Menetret JF [3]
  • Park E [3]
  • Rapoport TA [3]
  • Raunser S [3]
  • Rubinstein JL [3]
  • Sui SF [3]
  • Sun S [3]
  • Whynot A [3]
  • Ambro L [2]
  • Bai XC [2]
  • Bamford DH [2]
  • Bauer J [2]
  • Bednar J [2]
  • Bellova J [2]
  • Castano-diez D [2]
  • Cheng N [2]
  • Danev R [2]
  • Efremov RG [2]
  • Fujiyoshi Y [2]
  • Gao N [2]
  • Grunewald K [2]
  • Heymann JB [2]
  • Jaalinoja HT [2]
  • Kereiche S [2]
  • Kovacik L [2]
  • Kunova N [2]
  • Kutejova E [2]
  • Leitner A [2]
  • Ondrovicova G [2]
  • Pan XJ [2]
  • Park P [2]
  • Pevala V [2]
  • Raska I [2]
  • Scheres HWS [2]
  • Scheres SHW [2]
  • Siebert CA [2]
  • Steven AC [2]
  • Wang X [2]
  • Yan KG [2]
  • Yu X [2]
  • Zhang J [2]
  • Zhou ZH [2]
  • Abe K [1]
  • Afanasyev P [1]
  • Aibara S [1]
  • Al-amoudi A [1]
  • Alewijnse B [1]
  • Amunts A [1]
  • Andersen H [1]
  • Baker LA [1]
  • Ban N [1]
  • Beck F [1]
  • Benlekbir S [1]
  • Beurskens FJ [1]
  • Birch D [1]
  • Blanc E [1]
  • Boehringer D [1]
  • Bohn S [1]
  • Bossi G [1]
  • Boura E [1]
  • Boyington JC [1]
  • Briggs JA [1]
  • Briggs JAG [1]
  • Brown A [1]
  • Bubeck D [1]
  • Bueler SA [1]
  • Burton DR [1]
  • Cao C [1]
  • Carrascosa JL [1]
  • Caston JR [1]
  • Cecatiello V [1]
  • Chapman MS [1]
  • Chen LF [1]

Journal

  • NATURE [10]
  • ELIFE [7]
  • NAT COMMUN [5]
  • SCIENCE [5]
  • STRUCTURE [5]
  • CELL [4]
  • PNAS [4]
  • J STRUCT BIOL [3]
  • J VIROL [3]
  • J MOL BIOL [2]
  • SCI REP [2]
  • BIOCHIM BIOPHYS ACTA [1]
  • CELL RES [1]
  • EMBO J [1]
  • J BIOL CHEM [1]
  • MOL CELL [1]
  • NAT MED [1]
  • NAT STRUCT MOL BIOL [1]
  • PLOS PATHOG [1]
  • TO BE PUBLISHED [1]

Software

  • CHIMERA [12]
  • RELION [12]
  • SPIDER, RELION [4]
  • CHIMERA, MDFF [3]
  • RELION, CTFFIND3, EMAN2 [3]
  • CHIMERA, EMFIT, COOT [2]
  • CTFFIND3, RELION [2]
  • EMAN [2]
  • EMAN2 [2]
  • MRC [2]
  • PFT2, EM3DR2, POR, P3DR [2]
  • SCULPTOR, SITUS, CHIMERA [2]
  • BSOFT [1]
  • CHIMERA, COOT, PHENIX [1]
  • CHIMERA, MDFF, COOT [1]
  • CHIMERA, PHENIX [1]
  • EMAN, BSOFT [1]
  • EMAN1 [1]
  • EMAN1, EMAN2 [1]
  • EMAN2, RELION, CTFFIND4 [1]
  • EMAN2/SPARX [1]
  • FREALIGN, REFINE_FSPACE, BUILD_FSPACE [1]
  • IMAGIC-4D [1]
  • IMAGIC-5, SPIDER [1]
  • IMIRS [1]
  • IMIRS, RECISAFS [1]
  • IMOD [1]
  • IMOD, DYNAMO [1]
  • IMOD, PEET, TOMOCTF [1]
  • IMODFIT [1]
  • MOTIONCORR, IMOD, TOMOCTF, PEET, BSOFT [1]
  • P3DR [1]
  • PFT2 EM3DR2 [1]
  • RELION, 1.3 [1]
  • RSREF [1]
  • SEARCH_FSPACE, REFINE_FSPACE, BUILD_FSPACE [1]
  • SPARX [1]
  • SPARX, RELION [1]
  • SPIDER, ROTAN, FREALIGN, BUILD_FSPACE [1]
  • TOM [1]
  • UCSF CHIMERA [1]
  • URO [1]
  • XMIPP [1]

Microscope

  • FEI TITAN KRIOS [18]
  • FEI POLARA 300 [13]
  • FEI TECNAI F20 [12]
  • FEI TECNAI 20 [3]
  • FEI TECNAI F30 [2]
  • JEOL 3200FSC [2]
  • FEI TECNAI 12 [1]
  • FEI/PHILIPS CM200FEG [1]
  • FEI/PHILIPS CM300FEG/ST [1]
  • FEI/PHILIPS EM400 [1]
  • JEOL 1400 [1]
  • JEOL KYOTO-3000SFF [1]
  • OTHER [1]

Electron Source

  • FIELD EMISSION GUN [54]
  • TUNGSTEN HAIRPIN [2]
  • LAB6 [1]

Film or detector model

  • KODAK SO-163 FILM [13]
  • GATAN K2 4K X 4K [9]
  • GATAN ULTRASCAN 4000 4K X 4K [6]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • FEI FALCON II 4K X 4K [3]
  • TVIPS TEMCAM-F416 4K X 4K [3]
  • FEI FALCON I 4K X 4K [2]
  • GENERIC TVIPS [2]
  • GENERIC GATAN [1]
  • GENERIC GATAN 2K X 2K [1]
  • GENERIC IMAGE PLATES [1]
  • GENERIC TVIPS 4K X 4K [1]
  • OTHER [1]
  • TVIPS TEMCAM-F816 8K X 8K [1]

External links

  • PDB [29]
  • UniProt [21]
  • PDBe-Kb [20]
  • AlphaFold DB [19]
  • InterPro [10]
  • Gene Ontology [9]
  • EMPIAR [4]
Sort by: Download
Showing 1 - 10 of 57. Page 1 of 6
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Preview 10 entries View All Download file
EMD-3434
Download Map
3D View
Single-particle cryo-EM using alignment by classification ABC :Lumbricus terrestris hemoglobin at near-atomic resolution
CryoEM
Release date: July 26, 2017
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5m3l
Q-score: 0.409
Similar entry percentile: 53%

Afanasyev P, Linnemayr-Seer C, Ravelli RBG, Matadeen R, De Carlo S, Alewijnse B, Portugal RV, Pannu NS, Schatz M, van Heel M

To Be Published

EMD-3274
Download Map
3D View
Proteolytically inactive Human mitochondrial Lon protease incubated with ADP
CryoEM
Release date: Oct. 5, 2016
Resolution: 21.0 Å
EM Method: Single-particle

Kereiche S, Kovacik L, Bednar J, Pevala V, Kunova N, Ondrovicova G, Bauer J, Ambro L, Bellova J, Kutejova E, Raska I

Sci Rep (2016) 6 pp. 33631- [ Pubmed: 27632940 DOI: doi:10.1038/srep33631 ]

EMD-3275
Download Map
3D View
Proteolytically inactive Human mitochondrial Lon protease incubated with AMP-PNP
CryoEM
Release date: Oct. 5, 2016
Resolution: 15.0 Å
EM Method: Single-particle

Kereiche S, Kovacik L, Bednar J, Pevala V, Kunova N, Ondrovicova G, Bauer J, Ambro L, Bellova J, Kutejova E, Raska I

Sci Rep (2016) 6 pp. 33631- [ Pubmed: 27632940 DOI: doi:10.1038/srep33631 ]

EMD-3440
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3D View
Structure of the Saccharomyces cerevisiae TREX-2 complex
CryoEM
Release date: July 27, 2016
Resolution: 5.3 Å
EM Method: Single-particle
Fitted PDBs: 5g5p
Q-score: 0.14
Similar entry percentile: 15%

Aibara S, Bai XC, Stewart M

J Struct Biol (2016) 195 pp. 316-324 [ DOI: doi:10.1016/j.jsb.2016.07.007 Pubmed: 27422657 ]

EMD-3373
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3D View
electron density map of murine leukaemia virus envelope glycoprotein as reconstructed by subtomogram averaging applying a mask on 1 protomer on murine leukemia virus particles and virus like particles and applying 3fold symmetry to the single protomer afterwards
CryoEM
Release date: July 20, 2016
Resolution: 15.0 Å
EM Method: Subtomogram averaging

Riedel C, Vasishtan D, Siebert CA, Whittle C, Lehmann MJ, Mothes W, Grunewald K

J Struct Biol (2017) 197 pp. 172-180 [ DOI: doi:10.1016/j.jsb.2016.06.017 Pubmed: 27345930 ]

EMD-3347
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3D View
Raw data
EMPIAR-10057
Volta phase plate 3.2A resolution reconstruction of the T20S proteasome
CryoEM
Release date: March 16, 2016
Resolution: 3.2 Å
EM Method: Single-particle

Danev R, Baumeister W

eLife (2016) 5 [ DOI: doi:10.7554/eLife.13046 Pubmed: 26949259 ]

EMD-3348
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3D View
Raw data
EMPIAR-10058
cryo-EM structure of T20S proteasome
CryoEM
Release date: March 16, 2016
Resolution: 3.1 Å
EM Method: Single-particle

Danev R, Baumeister W

eLife (2016) 5 [ DOI: doi:10.7554/eLife.13046 Pubmed: 26949259 ]

EMD-6483
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Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
CryoEM
Release date: Feb. 24, 2016
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 3jbu
Q-score: 0.341
Similar entry percentile: 20%

Zhang J, Pan XJ, Yan KG, Sun S, Gao N, Sui SF

eLife (2015) 4 [ DOI: doi:10.7554/eLife.09684 Pubmed: 26670735 ]

EMD-6486
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3D View
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
CryoEM
Release date: Feb. 24, 2016
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 3jbv
Q-score: 0.394
Similar entry percentile: 23%

Zhang J, Pan XJ, Yan KG, Sun S, Gao N, Sui SF

eLife (2015) 4 [ DOI: doi:10.7554/eLife.09684 Pubmed: 26670735 ]

EMD-3108
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3D View
Raw data
EMPIAR-10046
Structure of the mouse serotonin receptor 5-HT3 in lipid vesicles
Negative staining
CryoEM
Release date: Jan. 13, 2016
Resolution: 12.0 Å
EM Method: Subtomogram averaging

Kudryashev M, Castano-Diez D, Deluz C, Hassaine G, Grasso L, Graf-Meyer A, Vogel H, Stahlberg H

Structure (2016) 24 pp. 165-170 [ Pubmed: 26724993 DOI: doi:10.1016/j.str.2015.11.004 ]

Sort by: Download
Showing 1 - 10 of 57. Page 1 of 6
Display:
Statistics
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Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [57]

Current status

  • REL [57]

Sample type

  • Sample [57]
  • Protein [37]
  • Virus [14]
  • Complex [6]
  • Cellular component [5]
  • DNA [2]
  • RNA [2]

Organism

  • Homo sapiens [9]
  • Escherichia coli [7]
  • Pseudomonas phage phi6 [4]
  • Danio rerio [4]
  • Cypovirus 1 [3]
  • Bos taurus [3]
  • Mus musculus [2]
  • Thermoplasma acidophilum [2]
  • Oryctolagus cuniculus [2]
  • Rattus norvegicus [1]
  • Salmonella phage p22 [1]
  • Vesicular stomatitis virus [1]
  • Simian immunodeficiency virus [1]
  • Murine leukemia virus [1]
  • Rous sarcoma virus [1]
  • Pseudomonas virus phi8 [1]
  • Penicillium chrysogenum virus [1]
  • Parechovirus b [1]
  • Methanothermobacter thermautotrophicus [1]
  • Methanocaldococcus jannaschii [1]
  • Human mastadenovirus c [1]
  • Thermus thermophilus [1]
  • Synthetic construct [1]
  • Haloarcula hispanica virus sh1 [1]
  • (no species) [1]
  • Schizosaccharomyces pombe [1]
  • Saccharomyces cerevisiae [1]
  • Lumbricus terrestris [1]
  • Sus scrofa [1]
  • Ovis aries [1]

EM Method

  • Single-particle [47]
  • Subtomogram averaging [5]
  • Electron Crystallography [2]
  • Tomography [2]
  • Helical reconstruction [1]

Resolution

  • < 2Å [1]
  • ≥ 3Å and < 4Å [11]
  • ≥ 4Å and < 5Å [4]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [9]
  • ≥ 8Å and < 12Å [13]
  • ≥ 12Å and < 16Å [6]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [6]
  • ≥ 30Å [4]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [4]
  • 250-500 kDa [10]
  • 500-1000 kDa [1]
  • 1-2 MDa [5]
  • 2-5 MDa [3]
  • 5-10 MDa [2]
  • > 10 MDa [3]

Release Date

  • 2017 [1]
  • 2016 [9]
  • 2015 [19]
  • 2014 [6]
  • 2013 [6]
  • 2012 [5]
  • 2011 [1]
  • 2010 [3]
  • 2009 [1]
  • 2008 [1]
  • 2007 [1]
  • 2006 [3]
  • 2002 [1]

Author by name

  • Huiskonen JT [6]
  • Kotecha A [5]
  • Stuart DI [5]
  • Akey CW [4]
  • Chambers MG [4]
  • Fu T [4]
  • Fu TM [4]
  • Ilca S [4]
  • Ilca SL [4]
  • Liao M [4]
  • Ludtke SJ [4]
  • Poranen MP [4]
  • Ru H [4]
  • Sun X [4]
  • Tong AB [4]
  • Wu H [4]
  • Aebersold R [3]
  • Baumeister W [3]
  • Butcher SJ [3]
  • Cheng L [3]
  • Conrad J [3]
  • Fernandez-leiro R [3]
  • Fuller SD [3]
  • Gumbart JC [3]
  • Lamers MH [3]
  • Li W [3]
  • Liu H [3]
  • Menetret JF [3]
  • Park E [3]
  • Rapoport TA [3]
  • Raunser S [3]
  • Rubinstein JL [3]
  • Sui SF [3]
  • Sun S [3]
  • Whynot A [3]
  • Ambro L [2]
  • Bai XC [2]
  • Bamford DH [2]
  • Bauer J [2]
  • Bednar J [2]
  • Bellova J [2]
  • Castano-diez D [2]
  • Cheng N [2]
  • Danev R [2]
  • Efremov RG [2]
  • Fujiyoshi Y [2]
  • Gao N [2]
  • Grunewald K [2]
  • Heymann JB [2]
  • Jaalinoja HT [2]
  • Kereiche S [2]
  • Kovacik L [2]
  • Kunova N [2]
  • Kutejova E [2]
  • Leitner A [2]
  • Ondrovicova G [2]
  • Pan XJ [2]
  • Park P [2]
  • Pevala V [2]
  • Raska I [2]
  • Scheres HWS [2]
  • Scheres SHW [2]
  • Siebert CA [2]
  • Steven AC [2]
  • Wang X [2]
  • Yan KG [2]
  • Yu X [2]
  • Zhang J [2]
  • Zhou ZH [2]
  • Abe K [1]
  • Afanasyev P [1]
  • Aibara S [1]
  • Al-amoudi A [1]
  • Alewijnse B [1]
  • Amunts A [1]
  • Andersen H [1]
  • Baker LA [1]
  • Ban N [1]
  • Beck F [1]
  • Benlekbir S [1]
  • Beurskens FJ [1]
  • Birch D [1]
  • Blanc E [1]
  • Boehringer D [1]
  • Bohn S [1]
  • Bossi G [1]
  • Boura E [1]
  • Boyington JC [1]
  • Briggs JA [1]
  • Briggs JAG [1]
  • Brown A [1]
  • Bubeck D [1]
  • Bueler SA [1]
  • Burton DR [1]
  • Cao C [1]
  • Carrascosa JL [1]
  • Caston JR [1]
  • Cecatiello V [1]
  • Chapman MS [1]
  • Chen LF [1]

Journal

  • NATURE [10]
  • ELIFE [7]
  • NAT COMMUN [5]
  • SCIENCE [5]
  • STRUCTURE [5]
  • CELL [4]
  • PNAS [4]
  • J STRUCT BIOL [3]
  • J VIROL [3]
  • J MOL BIOL [2]
  • SCI REP [2]
  • BIOCHIM BIOPHYS ACTA [1]
  • CELL RES [1]
  • EMBO J [1]
  • J BIOL CHEM [1]
  • MOL CELL [1]
  • NAT MED [1]
  • NAT STRUCT MOL BIOL [1]
  • PLOS PATHOG [1]
  • TO BE PUBLISHED [1]

Software

  • CHIMERA [12]
  • RELION [12]
  • SPIDER, RELION [4]
  • CHIMERA, MDFF [3]
  • RELION, CTFFIND3, EMAN2 [3]
  • CHIMERA, EMFIT, COOT [2]
  • CTFFIND3, RELION [2]
  • EMAN [2]
  • EMAN2 [2]
  • MRC [2]
  • PFT2, EM3DR2, POR, P3DR [2]
  • SCULPTOR, SITUS, CHIMERA [2]
  • BSOFT [1]
  • CHIMERA, COOT, PHENIX [1]
  • CHIMERA, MDFF, COOT [1]
  • CHIMERA, PHENIX [1]
  • EMAN, BSOFT [1]
  • EMAN1 [1]
  • EMAN1, EMAN2 [1]
  • EMAN2, RELION, CTFFIND4 [1]
  • EMAN2/SPARX [1]
  • FREALIGN, REFINE_FSPACE, BUILD_FSPACE [1]
  • IMAGIC-4D [1]
  • IMAGIC-5, SPIDER [1]
  • IMIRS [1]
  • IMIRS, RECISAFS [1]
  • IMOD [1]
  • IMOD, DYNAMO [1]
  • IMOD, PEET, TOMOCTF [1]
  • IMODFIT [1]
  • MOTIONCORR, IMOD, TOMOCTF, PEET, BSOFT [1]
  • P3DR [1]
  • PFT2 EM3DR2 [1]
  • RELION, 1.3 [1]
  • RSREF [1]
  • SEARCH_FSPACE, REFINE_FSPACE, BUILD_FSPACE [1]
  • SPARX [1]
  • SPARX, RELION [1]
  • SPIDER, ROTAN, FREALIGN, BUILD_FSPACE [1]
  • TOM [1]
  • UCSF CHIMERA [1]
  • URO [1]
  • XMIPP [1]

Microscope

  • FEI TITAN KRIOS [18]
  • FEI POLARA 300 [13]
  • FEI TECNAI F20 [12]
  • FEI TECNAI 20 [3]
  • FEI TECNAI F30 [2]
  • JEOL 3200FSC [2]
  • FEI TECNAI 12 [1]
  • FEI/PHILIPS CM200FEG [1]
  • FEI/PHILIPS CM300FEG/ST [1]
  • FEI/PHILIPS EM400 [1]
  • JEOL 1400 [1]
  • JEOL KYOTO-3000SFF [1]
  • OTHER [1]

Electron Source

  • FIELD EMISSION GUN [54]
  • TUNGSTEN HAIRPIN [2]
  • LAB6 [1]

Film or detector model

  • KODAK SO-163 FILM [13]
  • GATAN K2 4K X 4K [9]
  • GATAN ULTRASCAN 4000 4K X 4K [6]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • FEI FALCON II 4K X 4K [3]
  • TVIPS TEMCAM-F416 4K X 4K [3]
  • FEI FALCON I 4K X 4K [2]
  • GENERIC TVIPS [2]
  • GENERIC GATAN [1]
  • GENERIC GATAN 2K X 2K [1]
  • GENERIC IMAGE PLATES [1]
  • GENERIC TVIPS 4K X 4K [1]
  • OTHER [1]
  • TVIPS TEMCAM-F816 8K X 8K [1]

External links

  • PDB [29]
  • UniProt [21]
  • PDBe-Kb [20]
  • AlphaFold DB [19]
  • InterPro [10]
  • Gene Ontology [9]
  • EMPIAR [4]