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Current Database

  • EMDB [25365]

Current status

  • REL [25365]

Sample type

  • Protein [25003]
  • Complex [22736]
  • Ligand [16065]
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  • DNA [2876]
  • Virus [1213]
  • Cellular component [1129]
  • Cell [280]
  • Tissue [163]
  • Sample [70]
  • Other [45]

Organism

  • Homo sapiens [10248]
  • Synthetic construct [2173]
  • Mus musculus [1648]
  • Escherichia coli [1582]
  • Severe acute respiratory syndrome coronavirus [984]
  • Saccharomyces cerevisiae [940]
  • Escherichia coli [631]
  • Rattus norvegicus [623]
  • Saccharomyces cerevisiae [486]
  • Bos taurus [429]
  • Oryctolagus cuniculus [423]
  • Human immunodeficiency virus 1 [410]
  • Arabidopsis thaliana [407]
  • Lama glama [398]
  • Sus scrofa [396]
  • Xenopus laevis [346]
  • Drosophila melanogaster [184]
  • Mycolicibacterium smegmatis [160]
  • Mycobacterium tuberculosis [151]
  • Macaca mulatta [148]
  • Influenza a virus [132]
  • Vicugna pacos [124]
  • Gallus gallus [124]
  • Escherichia coli [118]
  • Geobacillus stearothermophilus [111]
  • Staphylococcus aureus [110]
  • Thermus thermophilus [102]
  • Mycobacterium tuberculosis [99]
  • Bacillus subtilis [95]
  • Pseudomonas aeruginosa [95]
  • Pseudomonas aeruginosa [83]
  • Danio rerio [83]
  • Enterobacteria phage t4 [81]
  • Bacillus subtilis [77]
  • Streptococcus pyogenes [75]
  • Aequorea victoria [74]
  • Mycolicibacterium smegmatis [71]
  • Chaetomium thermophilum [71]
  • Caenorhabditis elegans [69]
  • Chaetomium thermophilum [69]
  • Dna molecule [63]
  • Clostridioides difficile [58]
  • Vibrio cholerae [58]
  • Monkeypox virus [57]
  • Polytomella sp. pringsheim 198.80 [56]
  • Synechocystis sp. pcc 6803 [54]
  • Salmonella enterica [54]
  • Chlamydomonas reinhardtii [53]
  • Tetrahymena thermophila [53]
  • Escherichia phage lambda [52]
  • Plasmodium falciparum [52]
  • Klebsiella pneumoniae [52]
  • Salmonella enterica [52]
  • Enterovirus d [50]
  • Ovis aries [49]
  • Adeno-associated virus [48]
  • Amanita phalloides [48]
  • Enterobacteria phage t4 [47]
  • Saccharolobus solfataricus [47]
  • Plasmodium falciparum [47]
  • Acinetobacter baumannii [46]
  • African swine fever virus [44]
  • Oryza sativa [44]
  • Escherichia coli [44]
  • Aquifex aeolicus [43]
  • Spinacia oleracea [43]
  • Escherichia virus t7 [42]
  • Cricetulus griseus [40]
  • Severe acute respiratory syndrome coronavirus [39]
  • Middle east respiratory syndrome-related coronavirus [34]
  • (no species) [33]
  • Clostridium perfringens [33]
  • Legionella pneumophila [33]
  • Bacillus sp. (strain ps3) [32]
  • Thermus thermophilus [32]
  • Azotobacter vinelandii [32]
  • Thermotoga maritima [31]
  • Enterovirus a [31]
  • Escherichia coli [31]
  • Pyrococcus furiosus [30]
  • Schizosaccharomyces pombe [30]
  • Meiothermus taiwanensis [29]
  • Human coronavirus hku1 [29]
  • Spodoptera frugiperda [29]
  • Nipah virus [28]
  • Trichoplusia ni [28]
  • Enterovirus b [27]
  • Saccharomyces cerevisiae [27]
  • Clostridium botulinum [27]
  • Escherichia coli [27]
  • Candida albicans [27]
  • Komagataella phaffii [27]
  • Hepatitis b virus [26]
  • Saccharolobus solfataricus [26]
  • Azotobacter vinelandii [26]
  • Caulobacter vibrioides [26]
  • Trypanosoma brucei [26]
  • Epstein-barr virus (strain gd1) [25]
  • Thermosynechococcus elongatus [25]
  • Candidatus scalindua brodae [25]

EM Method

  • Single-particle [23787]
  • Helical reconstruction [1407]
  • Subtomogram averaging [151]
  • Electron Crystallography [20]

Resolution

  • < 2Å [245]
  • ≥ 2Å and < 3Å [7649]
  • ≥ 3Å and < 4Å [13741]
  • ≥ 4Å and < 5Å [2433]
  • ≥ 5Å and < 6Å [385]
  • ≥ 6Å and < 8Å [556]
  • ≥ 8Å and < 12Å [274]
  • ≥ 12Å and < 16Å [35]
  • ≥ 16Å and < 20Å [20]
  • ≥ 20Å and < 30Å [19]
  • ≥ 30Å [8]

Model molecular weight

  • 0-50 kDa [452]
  • 50-100 kDa [1674]
  • 100-250 kDa [7706]
  • 250-500 kDa [6175]
  • 500-1000 kDa [3276]
  • 1-2 MDa [1459]
  • 2-5 MDa [1567]
  • 5-10 MDa [387]
  • > 10 MDa [258]

Release Date

  • 2026 [4243]
  • 2025 [5706]
  • 2024 [4729]
  • 2023 [3029]
  • 2022 [2428]
  • 2021 [1701]
  • 2020 [1572]
  • 2019 [975]
  • 2018 [483]
  • 2017 [257]
  • 2016 [176]
  • 2015 [5]
  • 2014 [11]
  • 2013 [6]
  • 2012 [5]
  • 2011 [1]
  • 2010 [8]
  • 2009 [10]
  • 2008 [2]
  • 2007 [5]
  • 2006 [7]
  • 2005 [2]
  • 2004 [1]
  • 2003 [3]

Author by name

  • Zhang Y [952]
  • Wang Y [917]
  • Wang J [735]
  • Li Y [725]
  • Wang X [715]
  • Zhang X [709]
  • Liu Y [580]
  • Li X [578]
  • Li S [573]
  • Li Z [553]
  • Zhang Z [531]
  • Zhang J [480]
  • Li J [472]
  • Wang L [468]
  • Gao Y [461]
  • Li H [435]
  • Chen X [434]
  • Chen Y [432]
  • Liu C [397]
  • Zhang K [391]
  • Liu J [389]
  • Zhang L [389]
  • Wang Q [374]
  • Liu S [362]
  • Zhang H [355]
  • Liu Z [342]
  • Wang S [330]
  • Yang Y [330]
  • Wang C [326]
  • Wang H [326]
  • Chen J [324]
  • Li D [324]
  • Ward AB [324]
  • Chen Z [313]
  • Zhang S [312]
  • Liu X [308]
  • Liu L [306]
  • Zhao Y [304]
  • Shi Y [292]
  • Liu B [290]
  • Xu Y [284]
  • Huang Y [265]
  • Zhu Y [265]
  • Li M [262]
  • Wang M [261]
  • Zhao J [259]
  • Zhang B [256]
  • Wang Z [246]
  • Jiang Y [245]
  • Liu H [243]
  • Yang H [228]
  • Chen H [224]
  • Nureki O [224]
  • Yang X [223]
  • Sun L [218]
  • Wang P [216]
  • Chen L [215]
  • Huang J [215]
  • Rao Z [212]
  • Xu J [211]
  • Zhao X [210]
  • Li L [208]
  • Wang W [208]
  • Zhang W [207]
  • He J [206]
  • Li W [206]
  • Wu Y [206]
  • Wang F [203]
  • Beckmann R [201]
  • Zhou Y [200]
  • Yang J [198]
  • Zhou ZH [196]
  • Cheng J [194]
  • Kwong PD [194]
  • Zhang C [193]
  • Zhang P [192]
  • Xu C [190]
  • Sun Y [182]
  • Cheng Y [181]
  • Kotecha A [181]
  • Zhang Q [181]
  • Zhou J [181]
  • Chen Q [180]
  • Li F [180]
  • Lu Y [180]
  • Sun J [177]
  • Wang D [169]
  • Wu J [165]
  • Yang F [165]
  • Gao GF [164]
  • Zhou Q [164]
  • Huang X [163]
  • Wu C [162]
  • Du J [161]
  • Yu H [161]
  • Zhou X [159]
  • Feng Y [157]
  • Hu Y [156]
  • Rubinstein JL [156]
  • Wu S [156]

Author by ORCID

  • Ward AB [193]
  • Kotecha A [158]
  • Kwong PD [152]
  • Nureki O [139]
  • Cheng Y [132]
  • Raunser S [130]
  • Kobilka BK [122]
  • Zhou ZH [121]
  • Yamashita K [118]
  • Gao GF [117]
  • Rubinstein JL [117]
  • Skiniotis G [116]
  • Zhang K [112]
  • Zhang K [111]
  • Beckmann R [111]
  • Scheres SHW [110]
  • Chiu W [106]
  • Chai P [103]
  • Papasergi-scott MM [97]
  • Zheng Q [95]
  • Cottrell CA [94]
  • Gao Y [93]
  • Chipman P [93]
  • Xiong X [92]
  • Ranson NA [91]
  • Gmeiner P [91]
  • Cusack S [91]
  • Zhang P [91]
  • Goedert M [89]
  • Li S [89]
  • Aricescu AR [89]
  • Baker D [88]
  • He F [88]
  • Li H [85]
  • Xu HE [85]
  • Gao N [84]
  • Korostelev AA [83]
  • Kuhlbrandt W [82]
  • Hilger D [81]
  • Taylor DW [81]
  • Kurumizaka H [80]
  • Kouba T [80]
  • Batebi H [80]
  • Panova O [80]
  • Demo G [80]
  • Liu B [80]
  • Perez-hernandez G [80]
  • Hildebrand PW [80]
  • Rao Z [79]
  • Stahlberg H [79]
  • Du J [79]
  • Lea SM [78]
  • Mckenna R [78]
  • Amunts A [78]
  • Mills DJ [78]
  • Malinauskas T [77]
  • Stagno J [76]
  • Wilson DN [75]
  • Sobolevsky AI [74]
  • Crispin M [74]
  • Wang YX [73]
  • Torres JL [73]
  • Kishikawa JI [73]
  • Degenhardt MFS [73]
  • Mietzsch M [72]
  • Hardwick SW [72]
  • Nogales E [72]
  • Kollman JM [72]
  • Qi J [72]
  • Allen JD [72]
  • Cheng J [72]
  • Lander GC [72]
  • Carrique L [71]
  • Wang X [71]
  • Yu EW [70]
  • Deme JC [70]
  • Huiskonen JT [70]
  • Lu W [70]
  • He M [69]
  • Paulino C [68]
  • Borgnia MJ [68]
  • Robinson CV [67]
  • Park YJ [67]
  • Sun L [66]
  • Dutzler R [66]
  • King NP [66]
  • Yokoyama K [66]
  • Chirgadze DY [64]
  • Fuzik T [64]
  • Gorman J [64]
  • He J [64]
  • Urlaub H [64]
  • Murphy BJ [63]
  • Yang J [63]
  • Venugopal H [62]
  • Hummer G [62]
  • Zhou T [62]
  • Shirouzu M [62]
  • Xia N [62]
  • Kossiakoff AA [62]

Journal

  • NAT COMMUN [5367]
  • TO BE PUBLISHED [2836]
  • NATURE [2003]
  • NAT STRUCT MOL BIOL [1565]
  • PNAS [1418]
  • BIORXIV [1198]
  • SCI ADV [966]
  • SCIENCE [924]
  • MOL CELL [827]
  • CELL [797]
  • ELIFE [718]
  • NUCLEIC ACIDS RES [646]
  • STRUCTURE [585]
  • CELL REP [471]
  • COMMUN BIOL [340]
  • CELL RES [326]
  • EMBO J [324]
  • NAT CHEM BIOL [261]
  • CELL DISCOV [252]
  • J BIOL CHEM [236]
  • ACTA CRYSTALLOGR D STRUCT BIOL [235]
  • J MOL BIOL [215]
  • J VIROL [195]
  • PLOS PATHOG [189]
  • NAT MICROBIOL [171]
  • MBIO [117]
  • NAT PLANTS [109]
  • PROTEIN SCI [107]
  • J AM CHEM SOC [105]
  • PLOS BIOL [90]
  • CELL HOST MICROBE [89]
  • J STRUCT BIOL [83]
  • PROTEIN CELL [79]
  • IMMUNITY [74]
  • NEURON [74]
  • NAT METHODS [68]
  • SCI REP [68]
  • LIFE SCI ALLIANCE [66]
  • VIRUSES [66]
  • EMBO REP [62]
  • ISCIENCE [56]
  • IUCRJ [48]
  • ADV SCI [47]
  • INT J MOL SCI [47]
  • COMMUN CHEM [43]
  • NAT CATAL [42]
  • BIOCHEM BIOPHYS RES COMMUN [40]
  • PNAS NEXUS [40]
  • ACTA NEUROPATHOL [39]
  • RES SQ [39]
  • INT J BIOL MACROMOL [37]
  • J STRUCT BIOL X [36]
  • NPJ VACCINES [36]
  • J CELL BIOL [32]
  • SIGNAL TRANSDUCT TARGET THER [32]
  • ANGEW CHEM INT ED ENGL [29]
  • J MED CHEM [28]
  • MOL PLANT [28]
  • PLANT CELL [28]
  • PLANT COMMUN. [28]
  • SCI TRANSL MED [27]
  • BIOCHEMISTRY [25]
  • FEBS J [25]
  • BIOMOLECULES [24]
  • SCI IMMUNOL [24]
  • J.MOL.CELL.CARDIOL. [23]
  • BIOCHIM BIOPHYS ACTA BIOENERG [22]
  • VITA [21]
  • PLOS ONE [20]
  • RNA [20]
  • ACS NANO [19]
  • BIOCHEM J [18]
  • NAT NEUROSCI [18]
  • NATL SCI REV [18]
  • CELL REP MED [17]
  • CURR BIOL [17]
  • J EXP MED [16]
  • ACS CATAL [15]
  • ACS CHEM BIOL [15]
  • BLOOD [15]
  • DEV CELL [15]
  • GENES DEV [14]
  • NAT CHEM [14]
  • NAT NANOTECHNOL [14]
  • ACS INFECT DIS. [13]
  • FEBS LETT [13]
  • FUNDAM RES [13]
  • HLIFE [13]
  • SCI BULL (BEIJING) [13]
  • VIROL SIN [13]
  • ACS CENT SCI [12]
  • MICROBIOL SPECTR [12]
  • NAT IMMUNOL [12]
  • SCI SIGNAL [12]
  • FEBS OPEN BIO [11]
  • MOL.CELL PROTEOMICS [11]
  • NANO LETTERS [11]
  • SCI CHINA LIFE SCI [11]
  • ACS PHARMACOL TRANSL SCI [10]
  • FASEB J [10]

Software

  • CRYOSPARC [8627]
  • RELION [6054]
  • CTFFIND [1019]
  • GCTF [453]
  • CISTEM [245]
  • PHENIX [239]
  • COOT [220]
  • UCSF CHIMERAX [197]
  • FREALIGN [161]
  • WARP [122]
  • UCSF CHIMERA [96]
  • SPHIRE [82]
  • SPIDER [53]
  • CRYOLO [52]
  • JSPR [48]
  • AV3 [30]
  • DYNAMO [30]
  • TOM TOOLBOX [26]
  • EMAN2 [25]
  • ISOLDE [25]
  • SIMPLE [23]
  • EMAN [20]
  • AUTO3DEM [18]
  • MATLAB [16]
  • TOPAZ [14]
  • AIMLESS [12]
  • IMAGIC [12]
  • IMOD [12]
  • MOTIONCORR2 [12]
  • SUBTOM [12]
  • EMREADY [11]
  • POINTLESS [11]
  • MOLREP [10]
  • FOCUS [9]
  • FREALIX [9]
  • PYTOM [9]
  • URO [9]
  • IHRSR [8]
  • EPU [7]
  • J3DR [7]
  • SCIPION [7]
  • SPRING [7]
  • REFMAC [6]
  • SPARX [6]
  • TOM [6]
  • CHIMERA [5]
  • CTFFIND3 [5]
  • JALIGN [5]
  • EMAN1 [4]
  • EMCLARITY [4]
  • IMIRS [4]
  • SERIALEM [4]
  • SERVALCAT [4]
  • STOPGAP [4]
  • AMIRAFPM [3]
  • APPION [3]
  • CRYOS [3]
  • CTFFIND3, RELION [3]
  • JSPR, EMAN, EMAN2 [3]
  • NAMD [3]
  • PHASER [3]
  • ARP/WARP [2]
  • CCP4 PACKAGE [2]
  • CRYOSMART [2]
  • DEEPEMHANCER [2]
  • DIREX [2]
  • DOCKEM [2]
  • IMOD AND IN-HOUSE PROCEDURES [2]
  • M [2]
  • MDFF [2]
  • MPSA [2]
  • MRC, AND, OWN, PROGRAMS [2]
  • NOVACTF [2]
  • PEET [2]
  • SITUS [2]
  • SPARX/EMAN2 [2]
  • SPIDER AND IMAGIC [2]
  • AMIRA [1]
  • APPION, CTFFIND3, FINDEM, RELION [1]
  • AUTO3DEM PO2R [1]
  • AUTO3DEM PPFT [1]
  • CNS [1]
  • COAN [1]
  • COW [1]
  • CRY [1]
  • CRYOSP [1]
  • CRYOSPA [1]
  • CTFFIND4 [1]
  • CTFFIND4, RELION [1]
  • E2BOXER [1]
  • ELITE3D [1]
  • ELITE3D, FREALIGN [1]
  • EMAN, FREALIGN [1]
  • EMAN, IMAGIC [1]
  • EMAN, MPSA [1]
  • EMAN, XMIPP, SPIDER [1]
  • EMAN2, IHRSR, SPIDER [1]
  • EMPFT EM3DR [1]
  • EMPFT, EM3DR [1]
  • FREALIGN IMIRS [1]

Microscope

  • FEI TITAN KRIOS [13354]
  • TFS KRIOS [7857]
  • FEI TALOS ARCTICA [1366]
  • TFS GLACIOS [986]
  • JEOL CRYO ARM 300 [400]
  • FEI POLARA 300 [359]
  • FEI TECNAI F30 [257]
  • FEI TITAN [209]
  • FEI TECNAI ARCTICA [169]
  • TFS TALOS [97]
  • JEOL CRYO ARM 200 [57]
  • FEI TECNAI F20 [55]
  • JEOL 3200FSC [34]
  • FEI MORGAGNI [27]
  • FEI TECNAI 12 [25]
  • FEI TECNAI 20 [22]
  • TFS TITAN THEMIS [20]
  • FEI TECNAI SPIRIT [16]
  • FEI/PHILIPS CM300FEG/T [16]
  • JEOL 1400/HR YPS FEG [11]
  • JEOL 3200FS [7]
  • FEI/PHILIPS CM300FEG/HE [6]
  • TFS TALOS F200C [5]
  • FEI TECNAI SPHERA [3]
  • FEI/PHILIPS CM200FEG [3]
  • JEOL KYOTO-3000SFF [3]
  • FEI TECNAI 10 [2]
  • FEI/PHILIPS CM200FEG/ST [2]
  • JEOL 2200FSC [2]
  • JEOL 3000SFF [2]
  • SHUIMU TOTEM 300S [2]
  • TFS TUNDRA [2]
  • JEOL 1200EX [1]
  • JEOL 1200EXII [1]
  • JEOL 2010UHR [1]
  • JEOL 2100F [1]

Electron Source

  • FIELD EMISSION GUN [25113]
  • OTHER [185]
  • LAB6 [44]
  • TUNGSTEN HAIRPIN [23]

Film or detector model

  • GATAN K3 6K X 4K [7850]
  • GATAN K3 BIOQUANTUM 6K X 4K [5649]
  • GATAN K2 SUMMIT 4K X 4K [4603]
  • FEI FALCON IV 4K X 4K [3141]
  • FEI FALCON III 4K X 4K [1408]
  • GATAN K2 QUANTUM 4K X 4K [868]
  • TFS FALCON 4I 4K X 4K [686]
  • FEI FALCON II 4K X 4K [441]
  • GATAN K3 BIOCONTINUUM 6K X 4K [417]
  • GATAN K2 BASE 4K X 4K [63]
  • KODAK SO-163 FILM [46]
  • OTHER [36]
  • FEI FALCON I 4K X 4K [34]
  • DIRECT ELECTRON DE-20 5K X 3K [29]
  • DIRECT ELECTRON DE-64 8K X 8K [24]
  • DIRECT ELECTRON APOLLO 4K X 4K [23]
  • GATAN K2 IS 4K X 4K [16]
  • TVIPS TEMCAM-F416 4K X 4K [13]
  • DIRECT ELECTRON DE-16 4K X 4K [12]
  • DECTRIS SINGLA 1K X 1K [11]
  • FEI CETA 4K X 4K [11]
  • GATAN ULTRASCAN 4000 4K X 4K [11]
  • DIRECT ELECTRON DE-10 5K X 4K [8]
  • FEI EAGLE 4K X 4K [8]
  • GATAN K2 4K X 4K [6]
  • FEI EAGLE 2K X 2K [3]
  • GENERIC CCD [2]
  • DECTRIS ARINA 0.2K X 0.2K [1]
  • DIRECT ELECTRON DE-12 4K X 3K [1]
  • GATAN ORIUS SC600 2.7K X 2.7K [1]
  • GATAN ULTRASCAN 10000 10K X 10K [1]

External links

  • PDB [23020]
  • UniProt [21965]
  • PDBe-Kb [20104]
  • AlphaFold DB [19506]
  • InterPro [18343]
  • Gene Ontology [17910]
  • Pfam [16491]
  • ChEBI [13429]
  • ChEMBL [12046]
  • DrugBank [11067]
  • Complex Portal [5904]
  • EMPIAR [2347]
  • SCOP2 [342]
  • CATH [260]
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EMD-47384
Download Map
3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9e16
Q-score: 0.333
Similar entry percentile: 4%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47419
Download Map
3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 9e1s
Q-score: 0.333
Similar entry percentile: 2%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47876
Download Map
3D View
Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9ebb
Q-score: 0.512
Similar entry percentile: 43%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47899
Download Map
3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA fMet and deacylated tRNA at ribosome P and E sites.
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9ec3
Q-score: 0.461
Similar entry percentile: 48%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-49433
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The cryo-EM structure of the periplasmic chaperone Skp from Neisseria meningitidis
CryoEM
Release date: Sept. 2, 2026
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 9nhx
Q-score: 0.164
Similar entry percentile: 9%

Dubey S, Noinaj N

To Be Published

EMD-49747
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3D View
MPXV replisome bound to ssDNA
CryoEM
Release date: Sept. 2, 2026
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 9nsp
Q-score: 0.152
Similar entry percentile: 4%

Yu Z, Sathyanarayana P, Tan JMJT, Hu S, Fan X, Gao A, Kranzusch PJ, Loparo JJ, Abraham J

Nature (2026) [ DOI: doi:10.1038/s41586-026-10937-2 ]

EMD-52854
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Mouse teneurin-3 A1B1 isoform; microphthalmia-associated R2579W mutant; compact dimer conformation
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9igs
Q-score: 0.495
Similar entry percentile: 52%

Gogou C, Meijer DH

To Be Published

EMD-54808
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mechanosensitive channel MscS from Francisella tularensis in nanodiscs
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9sef
Q-score: 0.475
Similar entry percentile: 57%

Rasmussen A, Hemmelmann N, Bahner J, Hove TT, Flegler VJ, Kraft C, Hedrich R, Rasmussen T, Bottcher B

To Be Published

EMD-54810
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mechanosensitive channel MscS from Francisella tularensis, mutant F108A
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9seh
Q-score: 0.528
Similar entry percentile: 52%

Rasmussen A, Hemmelmann N, Bahner J, Hove TT, Flegler VJ, Kraft C, Hedrich R, Rasmussen T, Bottcher B

To Be Published

EMD-54813
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3D View
Prefusion-stabilized Hendra virus fusion protein in complex with inhibitory nanobody F130
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9sf4
Q-score: 0.639
Similar entry percentile: 92%

Kralova A, Hanke L

To Be Published

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Current Database

  • EMDB [25365]

Current status

  • REL [25365]

Sample type

  • Protein [25003]
  • Complex [22736]
  • Ligand [16065]
  • RNA [3825]
  • DNA [2876]
  • Virus [1213]
  • Cellular component [1129]
  • Cell [280]
  • Tissue [163]
  • Sample [70]
  • Other [45]

Organism

  • Homo sapiens [10248]
  • Synthetic construct [2173]
  • Mus musculus [1648]
  • Escherichia coli [1582]
  • Severe acute respiratory syndrome coronavirus [984]
  • Saccharomyces cerevisiae [940]
  • Escherichia coli [631]
  • Rattus norvegicus [623]
  • Saccharomyces cerevisiae [486]
  • Bos taurus [429]
  • Oryctolagus cuniculus [423]
  • Human immunodeficiency virus 1 [410]
  • Arabidopsis thaliana [407]
  • Lama glama [398]
  • Sus scrofa [396]
  • Xenopus laevis [346]
  • Drosophila melanogaster [184]
  • Mycolicibacterium smegmatis [160]
  • Mycobacterium tuberculosis [151]
  • Macaca mulatta [148]
  • Influenza a virus [132]
  • Vicugna pacos [124]
  • Gallus gallus [124]
  • Escherichia coli [118]
  • Geobacillus stearothermophilus [111]
  • Staphylococcus aureus [110]
  • Thermus thermophilus [102]
  • Mycobacterium tuberculosis [99]
  • Bacillus subtilis [95]
  • Pseudomonas aeruginosa [95]
  • Pseudomonas aeruginosa [83]
  • Danio rerio [83]
  • Enterobacteria phage t4 [81]
  • Bacillus subtilis [77]
  • Streptococcus pyogenes [75]
  • Aequorea victoria [74]
  • Mycolicibacterium smegmatis [71]
  • Chaetomium thermophilum [71]
  • Caenorhabditis elegans [69]
  • Chaetomium thermophilum [69]
  • Dna molecule [63]
  • Clostridioides difficile [58]
  • Vibrio cholerae [58]
  • Monkeypox virus [57]
  • Polytomella sp. pringsheim 198.80 [56]
  • Synechocystis sp. pcc 6803 [54]
  • Salmonella enterica [54]
  • Chlamydomonas reinhardtii [53]
  • Tetrahymena thermophila [53]
  • Escherichia phage lambda [52]
  • Plasmodium falciparum [52]
  • Klebsiella pneumoniae [52]
  • Salmonella enterica [52]
  • Enterovirus d [50]
  • Ovis aries [49]
  • Adeno-associated virus [48]
  • Amanita phalloides [48]
  • Enterobacteria phage t4 [47]
  • Saccharolobus solfataricus [47]
  • Plasmodium falciparum [47]
  • Acinetobacter baumannii [46]
  • African swine fever virus [44]
  • Oryza sativa [44]
  • Escherichia coli [44]
  • Aquifex aeolicus [43]
  • Spinacia oleracea [43]
  • Escherichia virus t7 [42]
  • Cricetulus griseus [40]
  • Severe acute respiratory syndrome coronavirus [39]
  • Middle east respiratory syndrome-related coronavirus [34]
  • (no species) [33]
  • Clostridium perfringens [33]
  • Legionella pneumophila [33]
  • Bacillus sp. (strain ps3) [32]
  • Thermus thermophilus [32]
  • Azotobacter vinelandii [32]
  • Thermotoga maritima [31]
  • Enterovirus a [31]
  • Escherichia coli [31]
  • Pyrococcus furiosus [30]
  • Schizosaccharomyces pombe [30]
  • Meiothermus taiwanensis [29]
  • Human coronavirus hku1 [29]
  • Spodoptera frugiperda [29]
  • Nipah virus [28]
  • Trichoplusia ni [28]
  • Enterovirus b [27]
  • Saccharomyces cerevisiae [27]
  • Clostridium botulinum [27]
  • Escherichia coli [27]
  • Candida albicans [27]
  • Komagataella phaffii [27]
  • Hepatitis b virus [26]
  • Saccharolobus solfataricus [26]
  • Azotobacter vinelandii [26]
  • Caulobacter vibrioides [26]
  • Trypanosoma brucei [26]
  • Epstein-barr virus (strain gd1) [25]
  • Thermosynechococcus elongatus [25]
  • Candidatus scalindua brodae [25]

EM Method

  • Single-particle [23787]
  • Helical reconstruction [1407]
  • Subtomogram averaging [151]
  • Electron Crystallography [20]

Resolution

  • < 2Å [245]
  • ≥ 2Å and < 3Å [7649]
  • ≥ 3Å and < 4Å [13741]
  • ≥ 4Å and < 5Å [2433]
  • ≥ 5Å and < 6Å [385]
  • ≥ 6Å and < 8Å [556]
  • ≥ 8Å and < 12Å [274]
  • ≥ 12Å and < 16Å [35]
  • ≥ 16Å and < 20Å [20]
  • ≥ 20Å and < 30Å [19]
  • ≥ 30Å [8]

Model molecular weight

  • 0-50 kDa [452]
  • 50-100 kDa [1674]
  • 100-250 kDa [7706]
  • 250-500 kDa [6175]
  • 500-1000 kDa [3276]
  • 1-2 MDa [1459]
  • 2-5 MDa [1567]
  • 5-10 MDa [387]
  • > 10 MDa [258]

Release Date

  • 2026 [4243]
  • 2025 [5706]
  • 2024 [4729]
  • 2023 [3029]
  • 2022 [2428]
  • 2021 [1701]
  • 2020 [1572]
  • 2019 [975]
  • 2018 [483]
  • 2017 [257]
  • 2016 [176]
  • 2015 [5]
  • 2014 [11]
  • 2013 [6]
  • 2012 [5]
  • 2011 [1]
  • 2010 [8]
  • 2009 [10]
  • 2008 [2]
  • 2007 [5]
  • 2006 [7]
  • 2005 [2]
  • 2004 [1]
  • 2003 [3]

Author by name

  • Zhang Y [952]
  • Wang Y [917]
  • Wang J [735]
  • Li Y [725]
  • Wang X [715]
  • Zhang X [709]
  • Liu Y [580]
  • Li X [578]
  • Li S [573]
  • Li Z [553]
  • Zhang Z [531]
  • Zhang J [480]
  • Li J [472]
  • Wang L [468]
  • Gao Y [461]
  • Li H [435]
  • Chen X [434]
  • Chen Y [432]
  • Liu C [397]
  • Zhang K [391]
  • Liu J [389]
  • Zhang L [389]
  • Wang Q [374]
  • Liu S [362]
  • Zhang H [355]
  • Liu Z [342]
  • Wang S [330]
  • Yang Y [330]
  • Wang C [326]
  • Wang H [326]
  • Chen J [324]
  • Li D [324]
  • Ward AB [324]
  • Chen Z [313]
  • Zhang S [312]
  • Liu X [308]
  • Liu L [306]
  • Zhao Y [304]
  • Shi Y [292]
  • Liu B [290]
  • Xu Y [284]
  • Huang Y [265]
  • Zhu Y [265]
  • Li M [262]
  • Wang M [261]
  • Zhao J [259]
  • Zhang B [256]
  • Wang Z [246]
  • Jiang Y [245]
  • Liu H [243]
  • Yang H [228]
  • Chen H [224]
  • Nureki O [224]
  • Yang X [223]
  • Sun L [218]
  • Wang P [216]
  • Chen L [215]
  • Huang J [215]
  • Rao Z [212]
  • Xu J [211]
  • Zhao X [210]
  • Li L [208]
  • Wang W [208]
  • Zhang W [207]
  • He J [206]
  • Li W [206]
  • Wu Y [206]
  • Wang F [203]
  • Beckmann R [201]
  • Zhou Y [200]
  • Yang J [198]
  • Zhou ZH [196]
  • Cheng J [194]
  • Kwong PD [194]
  • Zhang C [193]
  • Zhang P [192]
  • Xu C [190]
  • Sun Y [182]
  • Cheng Y [181]
  • Kotecha A [181]
  • Zhang Q [181]
  • Zhou J [181]
  • Chen Q [180]
  • Li F [180]
  • Lu Y [180]
  • Sun J [177]
  • Wang D [169]
  • Wu J [165]
  • Yang F [165]
  • Gao GF [164]
  • Zhou Q [164]
  • Huang X [163]
  • Wu C [162]
  • Du J [161]
  • Yu H [161]
  • Zhou X [159]
  • Feng Y [157]
  • Hu Y [156]
  • Rubinstein JL [156]
  • Wu S [156]

Author by ORCID

  • Ward AB [193]
  • Kotecha A [158]
  • Kwong PD [152]
  • Nureki O [139]
  • Cheng Y [132]
  • Raunser S [130]
  • Kobilka BK [122]
  • Zhou ZH [121]
  • Yamashita K [118]
  • Gao GF [117]
  • Rubinstein JL [117]
  • Skiniotis G [116]
  • Zhang K [112]
  • Zhang K [111]
  • Beckmann R [111]
  • Scheres SHW [110]
  • Chiu W [106]
  • Chai P [103]
  • Papasergi-scott MM [97]
  • Zheng Q [95]
  • Cottrell CA [94]
  • Gao Y [93]
  • Chipman P [93]
  • Xiong X [92]
  • Ranson NA [91]
  • Gmeiner P [91]
  • Cusack S [91]
  • Zhang P [91]
  • Goedert M [89]
  • Li S [89]
  • Aricescu AR [89]
  • Baker D [88]
  • He F [88]
  • Li H [85]
  • Xu HE [85]
  • Gao N [84]
  • Korostelev AA [83]
  • Kuhlbrandt W [82]
  • Hilger D [81]
  • Taylor DW [81]
  • Kurumizaka H [80]
  • Kouba T [80]
  • Batebi H [80]
  • Panova O [80]
  • Demo G [80]
  • Liu B [80]
  • Perez-hernandez G [80]
  • Hildebrand PW [80]
  • Rao Z [79]
  • Stahlberg H [79]
  • Du J [79]
  • Lea SM [78]
  • Mckenna R [78]
  • Amunts A [78]
  • Mills DJ [78]
  • Malinauskas T [77]
  • Stagno J [76]
  • Wilson DN [75]
  • Sobolevsky AI [74]
  • Crispin M [74]
  • Wang YX [73]
  • Torres JL [73]
  • Kishikawa JI [73]
  • Degenhardt MFS [73]
  • Mietzsch M [72]
  • Hardwick SW [72]
  • Nogales E [72]
  • Kollman JM [72]
  • Qi J [72]
  • Allen JD [72]
  • Cheng J [72]
  • Lander GC [72]
  • Carrique L [71]
  • Wang X [71]
  • Yu EW [70]
  • Deme JC [70]
  • Huiskonen JT [70]
  • Lu W [70]
  • He M [69]
  • Paulino C [68]
  • Borgnia MJ [68]
  • Robinson CV [67]
  • Park YJ [67]
  • Sun L [66]
  • Dutzler R [66]
  • King NP [66]
  • Yokoyama K [66]
  • Chirgadze DY [64]
  • Fuzik T [64]
  • Gorman J [64]
  • He J [64]
  • Urlaub H [64]
  • Murphy BJ [63]
  • Yang J [63]
  • Venugopal H [62]
  • Hummer G [62]
  • Zhou T [62]
  • Shirouzu M [62]
  • Xia N [62]
  • Kossiakoff AA [62]

Journal

  • NAT COMMUN [5367]
  • TO BE PUBLISHED [2836]
  • NATURE [2003]
  • NAT STRUCT MOL BIOL [1565]
  • PNAS [1418]
  • BIORXIV [1198]
  • SCI ADV [966]
  • SCIENCE [924]
  • MOL CELL [827]
  • CELL [797]
  • ELIFE [718]
  • NUCLEIC ACIDS RES [646]
  • STRUCTURE [585]
  • CELL REP [471]
  • COMMUN BIOL [340]
  • CELL RES [326]
  • EMBO J [324]
  • NAT CHEM BIOL [261]
  • CELL DISCOV [252]
  • J BIOL CHEM [236]
  • ACTA CRYSTALLOGR D STRUCT BIOL [235]
  • J MOL BIOL [215]
  • J VIROL [195]
  • PLOS PATHOG [189]
  • NAT MICROBIOL [171]
  • MBIO [117]
  • NAT PLANTS [109]
  • PROTEIN SCI [107]
  • J AM CHEM SOC [105]
  • PLOS BIOL [90]
  • CELL HOST MICROBE [89]
  • J STRUCT BIOL [83]
  • PROTEIN CELL [79]
  • IMMUNITY [74]
  • NEURON [74]
  • NAT METHODS [68]
  • SCI REP [68]
  • LIFE SCI ALLIANCE [66]
  • VIRUSES [66]
  • EMBO REP [62]
  • ISCIENCE [56]
  • IUCRJ [48]
  • ADV SCI [47]
  • INT J MOL SCI [47]
  • COMMUN CHEM [43]
  • NAT CATAL [42]
  • BIOCHEM BIOPHYS RES COMMUN [40]
  • PNAS NEXUS [40]
  • ACTA NEUROPATHOL [39]
  • RES SQ [39]
  • INT J BIOL MACROMOL [37]
  • J STRUCT BIOL X [36]
  • NPJ VACCINES [36]
  • J CELL BIOL [32]
  • SIGNAL TRANSDUCT TARGET THER [32]
  • ANGEW CHEM INT ED ENGL [29]
  • J MED CHEM [28]
  • MOL PLANT [28]
  • PLANT CELL [28]
  • PLANT COMMUN. [28]
  • SCI TRANSL MED [27]
  • BIOCHEMISTRY [25]
  • FEBS J [25]
  • BIOMOLECULES [24]
  • SCI IMMUNOL [24]
  • J.MOL.CELL.CARDIOL. [23]
  • BIOCHIM BIOPHYS ACTA BIOENERG [22]
  • VITA [21]
  • PLOS ONE [20]
  • RNA [20]
  • ACS NANO [19]
  • BIOCHEM J [18]
  • NAT NEUROSCI [18]
  • NATL SCI REV [18]
  • CELL REP MED [17]
  • CURR BIOL [17]
  • J EXP MED [16]
  • ACS CATAL [15]
  • ACS CHEM BIOL [15]
  • BLOOD [15]
  • DEV CELL [15]
  • GENES DEV [14]
  • NAT CHEM [14]
  • NAT NANOTECHNOL [14]
  • ACS INFECT DIS. [13]
  • FEBS LETT [13]
  • FUNDAM RES [13]
  • HLIFE [13]
  • SCI BULL (BEIJING) [13]
  • VIROL SIN [13]
  • ACS CENT SCI [12]
  • MICROBIOL SPECTR [12]
  • NAT IMMUNOL [12]
  • SCI SIGNAL [12]
  • FEBS OPEN BIO [11]
  • MOL.CELL PROTEOMICS [11]
  • NANO LETTERS [11]
  • SCI CHINA LIFE SCI [11]
  • ACS PHARMACOL TRANSL SCI [10]
  • FASEB J [10]

Software

  • CRYOSPARC [8627]
  • RELION [6054]
  • CTFFIND [1019]
  • GCTF [453]
  • CISTEM [245]
  • PHENIX [239]
  • COOT [220]
  • UCSF CHIMERAX [197]
  • FREALIGN [161]
  • WARP [122]
  • UCSF CHIMERA [96]
  • SPHIRE [82]
  • SPIDER [53]
  • CRYOLO [52]
  • JSPR [48]
  • AV3 [30]
  • DYNAMO [30]
  • TOM TOOLBOX [26]
  • EMAN2 [25]
  • ISOLDE [25]
  • SIMPLE [23]
  • EMAN [20]
  • AUTO3DEM [18]
  • MATLAB [16]
  • TOPAZ [14]
  • AIMLESS [12]
  • IMAGIC [12]
  • IMOD [12]
  • MOTIONCORR2 [12]
  • SUBTOM [12]
  • EMREADY [11]
  • POINTLESS [11]
  • MOLREP [10]
  • FOCUS [9]
  • FREALIX [9]
  • PYTOM [9]
  • URO [9]
  • IHRSR [8]
  • EPU [7]
  • J3DR [7]
  • SCIPION [7]
  • SPRING [7]
  • REFMAC [6]
  • SPARX [6]
  • TOM [6]
  • CHIMERA [5]
  • CTFFIND3 [5]
  • JALIGN [5]
  • EMAN1 [4]
  • EMCLARITY [4]
  • IMIRS [4]
  • SERIALEM [4]
  • SERVALCAT [4]
  • STOPGAP [4]
  • AMIRAFPM [3]
  • APPION [3]
  • CRYOS [3]
  • CTFFIND3, RELION [3]
  • JSPR, EMAN, EMAN2 [3]
  • NAMD [3]
  • PHASER [3]
  • ARP/WARP [2]
  • CCP4 PACKAGE [2]
  • CRYOSMART [2]
  • DEEPEMHANCER [2]
  • DIREX [2]
  • DOCKEM [2]
  • IMOD AND IN-HOUSE PROCEDURES [2]
  • M [2]
  • MDFF [2]
  • MPSA [2]
  • MRC, AND, OWN, PROGRAMS [2]
  • NOVACTF [2]
  • PEET [2]
  • SITUS [2]
  • SPARX/EMAN2 [2]
  • SPIDER AND IMAGIC [2]
  • AMIRA [1]
  • APPION, CTFFIND3, FINDEM, RELION [1]
  • AUTO3DEM PO2R [1]
  • AUTO3DEM PPFT [1]
  • CNS [1]
  • COAN [1]
  • COW [1]
  • CRY [1]
  • CRYOSP [1]
  • CRYOSPA [1]
  • CTFFIND4 [1]
  • CTFFIND4, RELION [1]
  • E2BOXER [1]
  • ELITE3D [1]
  • ELITE3D, FREALIGN [1]
  • EMAN, FREALIGN [1]
  • EMAN, IMAGIC [1]
  • EMAN, MPSA [1]
  • EMAN, XMIPP, SPIDER [1]
  • EMAN2, IHRSR, SPIDER [1]
  • EMPFT EM3DR [1]
  • EMPFT, EM3DR [1]
  • FREALIGN IMIRS [1]

Microscope

  • FEI TITAN KRIOS [13354]
  • TFS KRIOS [7857]
  • FEI TALOS ARCTICA [1366]
  • TFS GLACIOS [986]
  • JEOL CRYO ARM 300 [400]
  • FEI POLARA 300 [359]
  • FEI TECNAI F30 [257]
  • FEI TITAN [209]
  • FEI TECNAI ARCTICA [169]
  • TFS TALOS [97]
  • JEOL CRYO ARM 200 [57]
  • FEI TECNAI F20 [55]
  • JEOL 3200FSC [34]
  • FEI MORGAGNI [27]
  • FEI TECNAI 12 [25]
  • FEI TECNAI 20 [22]
  • TFS TITAN THEMIS [20]
  • FEI TECNAI SPIRIT [16]
  • FEI/PHILIPS CM300FEG/T [16]
  • JEOL 1400/HR YPS FEG [11]
  • JEOL 3200FS [7]
  • FEI/PHILIPS CM300FEG/HE [6]
  • TFS TALOS F200C [5]
  • FEI TECNAI SPHERA [3]
  • FEI/PHILIPS CM200FEG [3]
  • JEOL KYOTO-3000SFF [3]
  • FEI TECNAI 10 [2]
  • FEI/PHILIPS CM200FEG/ST [2]
  • JEOL 2200FSC [2]
  • JEOL 3000SFF [2]
  • SHUIMU TOTEM 300S [2]
  • TFS TUNDRA [2]
  • JEOL 1200EX [1]
  • JEOL 1200EXII [1]
  • JEOL 2010UHR [1]
  • JEOL 2100F [1]

Electron Source

  • FIELD EMISSION GUN [25113]
  • OTHER [185]
  • LAB6 [44]
  • TUNGSTEN HAIRPIN [23]

Film or detector model

  • GATAN K3 6K X 4K [7850]
  • GATAN K3 BIOQUANTUM 6K X 4K [5649]
  • GATAN K2 SUMMIT 4K X 4K [4603]
  • FEI FALCON IV 4K X 4K [3141]
  • FEI FALCON III 4K X 4K [1408]
  • GATAN K2 QUANTUM 4K X 4K [868]
  • TFS FALCON 4I 4K X 4K [686]
  • FEI FALCON II 4K X 4K [441]
  • GATAN K3 BIOCONTINUUM 6K X 4K [417]
  • GATAN K2 BASE 4K X 4K [63]
  • KODAK SO-163 FILM [46]
  • OTHER [36]
  • FEI FALCON I 4K X 4K [34]
  • DIRECT ELECTRON DE-20 5K X 3K [29]
  • DIRECT ELECTRON DE-64 8K X 8K [24]
  • DIRECT ELECTRON APOLLO 4K X 4K [23]
  • GATAN K2 IS 4K X 4K [16]
  • TVIPS TEMCAM-F416 4K X 4K [13]
  • DIRECT ELECTRON DE-16 4K X 4K [12]
  • DECTRIS SINGLA 1K X 1K [11]
  • FEI CETA 4K X 4K [11]
  • GATAN ULTRASCAN 4000 4K X 4K [11]
  • DIRECT ELECTRON DE-10 5K X 4K [8]
  • FEI EAGLE 4K X 4K [8]
  • GATAN K2 4K X 4K [6]
  • FEI EAGLE 2K X 2K [3]
  • GENERIC CCD [2]
  • DECTRIS ARINA 0.2K X 0.2K [1]
  • DIRECT ELECTRON DE-12 4K X 3K [1]
  • GATAN ORIUS SC600 2.7K X 2.7K [1]
  • GATAN ULTRASCAN 10000 10K X 10K [1]

External links

  • PDB [23020]
  • UniProt [21965]
  • PDBe-Kb [20104]
  • AlphaFold DB [19506]
  • InterPro [18343]
  • Gene Ontology [17910]
  • Pfam [16491]
  • ChEBI [13429]
  • ChEMBL [12046]
  • DrugBank [11067]
  • Complex Portal [5904]
  • EMPIAR [2347]
  • SCOP2 [342]
  • CATH [260]