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Current Database

  • EMDB [131]

Current status

  • REL [131]

Sample type

  • Complex [129]
  • Protein [114]
  • Ligand [88]
  • RNA [10]
  • Cellular component [2]
  • DNA [2]

Organism

  • Homo sapiens [74]
  • Severe acute respiratory syndrome coronavirus [60]
  • Mycobacterium tuberculosis [12]
  • Synthetic construct [7]
  • Mycolicibacterium smegmatis [5]
  • Mycolicibacterium smegmatis [5]
  • Camelus bactrianus [4]
  • Bos taurus [4]
  • Foot-and-mouth disease virus [3]
  • Saccharomyces cerevisiae [3]
  • Mycobacterium tuberculosis [3]
  • Escherichia coli [3]
  • Saccharomyces cerevisiae [2]
  • Drosophila melanogaster [2]
  • Streptomyces coelicolor [1]
  • Bacteroides xylanisolvens [1]
  • Foot-and-mouth disease virus [1]
  • Variovorax paradoxus [1]

EM Method

  • Single-particle [130]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [62]
  • ≥ 3Å and < 4Å [51]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [9]

Model molecular weight

  • 50-100 kDa [6]
  • 100-250 kDa [32]
  • 250-500 kDa [28]
  • 500-1000 kDa [38]
  • 1-2 MDa [1]
  • 5-10 MDa [4]

Release Date

  • 2024 [27]
  • 2023 [27]
  • 2022 [31]
  • 2021 [39]
  • 2020 [4]
  • 2017 [3]

Author by name

  • Zhou S [131]
  • Berezuk AM [57]
  • Dimitrov DS [57]
  • Li W [57]
  • Mannar D [57]
  • Saville JW [57]
  • Srivastava SS [57]
  • Subramaniam S [57]
  • Tuttle KS [57]
  • Zhu X [57]
  • Kim A [49]
  • Zhang Y [46]
  • Gong H [43]
  • Rao Z [43]
  • Lai Y [42]
  • Gao Y [40]
  • Guddat LW [40]
  • Liu F [39]
  • Xu J [37]
  • Yu L [35]
  • Zhao Z [35]
  • Feng Z [34]
  • Sun Z [27]
  • Tang Y [27]
  • Wang W [27]
  • Yang X [25]
  • Barratt-boyes SM [21]
  • Da Silva Castanha Pm [21]
  • Jacobs JL [21]
  • Marti MM [21]
  • Mellors JW [21]
  • Sobolewski MD [21]
  • Treat BR [21]
  • Chen H [20]
  • Li L [20]
  • Ran T [20]
  • Wang J [20]
  • Demers JP [18]
  • Du Z [18]
  • Pang Y [16]
  • Shi K [16]
  • Zhou X [12]
  • Sekirov I [10]
  • Wang Q [9]
  • Chittori S [8]
  • Leopold K [8]
  • Wang L [8]
  • Ansel KM [7]
  • Asarnow D [7]
  • Borah A [7]
  • Carpenter C [7]
  • Cheng Y [7]
  • Fish L [7]
  • Gilbert LA [7]
  • Goodarzi H [7]
  • Goudreau J [7]
  • Khoroshkin M [7]
  • Navickas A [7]
  • Palka C [7]
  • Winters A [7]
  • Yousefi K [7]
  • Yu J [7]
  • Zhou SK [7]
  • Li Y [6]
  • Song Y [5]
  • Zhang Q [5]
  • Bai X [4]
  • Bao H [4]
  • Cao Y [4]
  • Cui Q [4]
  • Dai Y [4]
  • Geng T [4]
  • Geng Y [4]
  • Guo S [4]
  • He Y [4]
  • Hu F [4]
  • Hu Y [4]
  • Lan Z [4]
  • Li K [4]
  • Li P [4]
  • Liu Z [4]
  • Lou Z [4]
  • Lu Z [4]
  • Qiao H [4]
  • Sun P [4]
  • Wang S [4]
  • Wang Z [4]
  • Yang Q [4]
  • Cai G [3]
  • Chen C [3]
  • Connell SR [3]
  • Dhimole N [3]
  • Du S [3]
  • Fucini P [3]
  • Gil-carton D [3]
  • Gong HR [3]
  • Goto S [3]
  • Hase Y [3]
  • Himeno H [3]
  • Hirata Y [3]

Author by ORCID

  • Srivastava SS [57]
  • Gong H [43]
  • Berezuk AM [39]
  • Dimitrov DS [39]
  • Liu F [39]
  • Subramaniam S [39]
  • Saville JW [26]
  • Zhu X [26]
  • Lai Y [25]
  • Guddat LW [22]
  • Da Silva Castanha Pm [21]
  • Treat BR [21]
  • Gao Y [20]
  • Ran T [19]
  • Rao Z [9]
  • Leopold K [8]
  • Demers JP [8]
  • Li W [8]
  • Mannar D [8]
  • Tuttle KS [8]
  • Chittori S [8]
  • Gilbert LA [7]
  • Winters A [7]
  • Zhou SK [7]
  • Cheng Y [7]
  • Tang Y [7]
  • Goodarzi H [7]
  • Yu J [7]
  • Navickas A [7]
  • Ansel KM [7]
  • Zhou X [6]
  • Wang Q [5]
  • Wang L [4]
  • Geng Y [4]
  • Wang J [4]
  • Cao Y [4]
  • Kaminishi T [3]
  • Zhou S [3]
  • Connell SR [3]
  • Jiang S [3]
  • Cai G [3]
  • Yang Z [3]
  • Lu L [3]
  • Xie Y [3]
  • Iturrioz I [3]
  • Peng C [3]
  • Chen H [3]
  • Ying T [3]
  • Gao Y [3]
  • Mills DJ [3]
  • Yang X [3]
  • Fucini P [3]
  • Lopez-alonso JP [3]
  • Mu A [3]
  • Kurita D [3]
  • Yang X [3]
  • Gil-carton D [3]
  • Guo CJ [2]
  • Zhao W [2]
  • Burma S [2]
  • Chang CC [2]
  • Lu Z [2]
  • Kwon Y [2]
  • Olsen SK [2]
  • Hu HH [2]
  • Greene EC [2]
  • He Y [2]
  • Jasin M [2]
  • Sung P [2]
  • Taylor AB [2]
  • Konig MF [1]
  • Rao Z [1]
  • Harrison PJ [1]
  • Venugopal H [1]
  • Challis GL [1]
  • Papadopoulos N [1]
  • Alkhalaf LM [1]
  • Shui G [1]
  • Paul S [1]
  • Mog BJ [1]
  • Bettegowda C [1]
  • Yu G [1]
  • Guddat LW [1]
  • Tian C [1]
  • Yu L [1]
  • Zhou S [1]
  • Belousoff MJ [1]
  • Pearlman AH [1]
  • Ji W [1]
  • Dinapoli SR [1]
  • Corre C [1]
  • Bhukya H [1]
  • Sun H [1]
  • Styles KM [1]
  • Wong LL [1]
  • Cryle MJ [1]
  • Vogelstein B [1]
  • Gabelli SB [1]
  • Zhou S [1]
  • Miller MS [1]

Journal

  • NAT COMMUN [39]
  • NATURE [19]
  • CELL REP [18]
  • MOL CELL [17]
  • PLOS BIOL [9]
  • NAT METHODS [7]
  • PNAS [4]
  • CELL DISCOV [3]
  • ELIFE [3]
  • NUCLEIC ACIDS RES [3]
  • SIGNAL TRANSDUCT TARGET THER [3]
  • J GENET GENOMICS [2]
  • J VIROL [2]
  • PLOS PATHOG [2]

Software

  • CRYOSPARC [53]
  • RELION [11]
  • GCTF [1]

Microscope

  • FEI TITAN KRIOS [84]
  • TFS KRIOS [31]
  • FEI TECNAI F30 [5]
  • FEI TECNAI ARCTICA [4]
  • TFS GLACIOS [4]
  • FEI TALOS ARCTICA [1]
  • FEI TECNAI 20 [1]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [130]
  • OTHER [1]

Film or detector model

  • FEI FALCON IV 4K X 4K [93]
  • GATAN K3 6K X 4K [15]
  • GATAN K2 SUMMIT 4K X 4K [8]
  • GATAN K3 BIOQUANTUM 6K X 4K [7]
  • FEI FALCON II 4K X 4K [4]
  • DIRECT ELECTRON DE-16 4K X 4K [2]
  • FEI CETA 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • UniProt [111]
  • PDB [109]
  • PDBe-Kb [106]
  • Gene Ontology [104]
  • InterPro [104]
  • Pfam [104]
  • ChEBI [86]
  • AlphaFold DB [84]
  • ChEMBL [84]
  • Complex Portal [77]
  • DrugBank [25]
  • SCOP2 [1]
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EMD-38307
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the pentamerA complex of LGR4-RSPO2-ZNRF3 delta RING
Release date: Dec. 4, 2024
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8xfp
Q-score: 0.405

Wang L, Hu F, Cui Q, Qiao H, Li L, Geng T, Li Y, Sun Z, Zhou S, Lan Z, Guo S, Hu Y, Wang J, Yang Q, Wang Z, Dai Y, Geng Y

Nat Commun (2025) 16 pp. 362-362 [ DOI: doi:10.1038/s41467-024-55431-3 Pubmed: 39753551 ]

EMD-38308
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LGR4-RSPO2-ZNRF3 RING domain 1:2:2
Release date: Dec. 4, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8xfs
Q-score: 0.446

Wang L, Hu F, Cui Q, Qiao H, Li L, Geng T, Li Y, Sun Z, Zhou S, Lan Z, Guo S, Hu Y, Wang J, Yang Q, Wang Z, Dai Y, Geng Y

Nat Commun (2025) 16 pp. 362-362 [ DOI: doi:10.1038/s41467-024-55431-3 Pubmed: 39753551 ]

EMD-38309
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LGR4-RSPO2-ZNRF3 1:1:1
Release date: Dec. 4, 2024
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 8xft
Q-score: 0.516

Wang L, Hu F, Cui Q, Qiao H, Li L, Geng T, Li Y, Sun Z, Zhou S, Lan Z, Guo S, Hu Y, Wang J, Yang Q, Wang Z, Dai Y, Geng Y

Nat Commun (2025) 16 pp. 362-362 [ DOI: doi:10.1038/s41467-024-55431-3 Pubmed: 39753551 ]

EMD-38982
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LGR4-RSPO2-ZNRF3 2:2:2
Release date: Dec. 4, 2024
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 8y69
Q-score: 0.391

Wang L, Hu F, Cui Q, Qiao H, Li L, Geng T, Li Y, Sun Z, Zhou S, Lan Z, Guo S, Hu Y, Wang J, Yang Q, Wang Z, Dai Y, Geng Y

Nat Commun (2025) 16 pp. 362-362 [ DOI: doi:10.1038/s41467-024-55431-3 Pubmed: 39753551 ]

EMD-42275
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RORC mRNA 3 UTR riboswitch class A
Release date: Sept. 18, 2024
Resolution: 10.0 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) [ DOI: doi:10.1038/s41592-024-02335-1 Pubmed: 39014073 ]

EMD-42276
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RORC mRNA 3 UTR riboswitch class B
Release date: Sept. 18, 2024
Resolution: 10.0 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) [ DOI: doi:10.1038/s41592-024-02335-1 Pubmed: 39014073 ]

EMD-42277
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RORC mRNA 3 UTR riboswitch class C
Release date: Sept. 18, 2024
Resolution: 10.0 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) [ DOI: doi:10.1038/s41592-024-02335-1 Pubmed: 39014073 ]

EMD-42400
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RORC mRNA 3 UTR riboswitch A97G/G98A mutant class C
Release date: July 31, 2024
Resolution: 9.9 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) 21 pp. 1634-1645 [ DOI: doi:10.1038/s41592-024-02335-1 Pubmed: 39014073 ]

EMD-42401
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RORC mRNA 3 UTR riboswitch 77-GA mutant class A
Release date: July 31, 2024
Resolution: 10.1 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) 21 pp. 1634-1645 [ DOI: doi:10.1038/s41592-024-02335-1 Pubmed: 39014073 ]

EMD-42403
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RORC mRNA 3 UTR riboswitch 117-AC mutant class C
Release date: July 31, 2024
Resolution: 9.9 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) 21 pp. 1634-1645 [ DOI: doi:10.1038/s41592-024-02335-1 Pubmed: 39014073 ]

Sort by: Download
Showing 1 - 10 of 131. Page 1 of 14
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Filter By

Current Database

  • EMDB [131]

Current status

  • REL [131]

Sample type

  • Complex [129]
  • Protein [114]
  • Ligand [88]
  • RNA [10]
  • Cellular component [2]
  • DNA [2]

Organism

  • Homo sapiens [74]
  • Severe acute respiratory syndrome coronavirus [60]
  • Mycobacterium tuberculosis [12]
  • Synthetic construct [7]
  • Mycolicibacterium smegmatis [5]
  • Mycolicibacterium smegmatis [5]
  • Camelus bactrianus [4]
  • Bos taurus [4]
  • Foot-and-mouth disease virus [3]
  • Saccharomyces cerevisiae [3]
  • Mycobacterium tuberculosis [3]
  • Escherichia coli [3]
  • Saccharomyces cerevisiae [2]
  • Drosophila melanogaster [2]
  • Streptomyces coelicolor [1]
  • Bacteroides xylanisolvens [1]
  • Foot-and-mouth disease virus [1]
  • Variovorax paradoxus [1]

EM Method

  • Single-particle [130]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [62]
  • ≥ 3Å and < 4Å [51]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [9]

Model molecular weight

  • 50-100 kDa [6]
  • 100-250 kDa [32]
  • 250-500 kDa [28]
  • 500-1000 kDa [38]
  • 1-2 MDa [1]
  • 5-10 MDa [4]

Release Date

  • 2024 [27]
  • 2023 [27]
  • 2022 [31]
  • 2021 [39]
  • 2020 [4]
  • 2017 [3]

Author by name

  • Zhou S [131]
  • Berezuk AM [57]
  • Dimitrov DS [57]
  • Li W [57]
  • Mannar D [57]
  • Saville JW [57]
  • Srivastava SS [57]
  • Subramaniam S [57]
  • Tuttle KS [57]
  • Zhu X [57]
  • Kim A [49]
  • Zhang Y [46]
  • Gong H [43]
  • Rao Z [43]
  • Lai Y [42]
  • Gao Y [40]
  • Guddat LW [40]
  • Liu F [39]
  • Xu J [37]
  • Yu L [35]
  • Zhao Z [35]
  • Feng Z [34]
  • Sun Z [27]
  • Tang Y [27]
  • Wang W [27]
  • Yang X [25]
  • Barratt-boyes SM [21]
  • Da Silva Castanha Pm [21]
  • Jacobs JL [21]
  • Marti MM [21]
  • Mellors JW [21]
  • Sobolewski MD [21]
  • Treat BR [21]
  • Chen H [20]
  • Li L [20]
  • Ran T [20]
  • Wang J [20]
  • Demers JP [18]
  • Du Z [18]
  • Pang Y [16]
  • Shi K [16]
  • Zhou X [12]
  • Sekirov I [10]
  • Wang Q [9]
  • Chittori S [8]
  • Leopold K [8]
  • Wang L [8]
  • Ansel KM [7]
  • Asarnow D [7]
  • Borah A [7]
  • Carpenter C [7]
  • Cheng Y [7]
  • Fish L [7]
  • Gilbert LA [7]
  • Goodarzi H [7]
  • Goudreau J [7]
  • Khoroshkin M [7]
  • Navickas A [7]
  • Palka C [7]
  • Winters A [7]
  • Yousefi K [7]
  • Yu J [7]
  • Zhou SK [7]
  • Li Y [6]
  • Song Y [5]
  • Zhang Q [5]
  • Bai X [4]
  • Bao H [4]
  • Cao Y [4]
  • Cui Q [4]
  • Dai Y [4]
  • Geng T [4]
  • Geng Y [4]
  • Guo S [4]
  • He Y [4]
  • Hu F [4]
  • Hu Y [4]
  • Lan Z [4]
  • Li K [4]
  • Li P [4]
  • Liu Z [4]
  • Lou Z [4]
  • Lu Z [4]
  • Qiao H [4]
  • Sun P [4]
  • Wang S [4]
  • Wang Z [4]
  • Yang Q [4]
  • Cai G [3]
  • Chen C [3]
  • Connell SR [3]
  • Dhimole N [3]
  • Du S [3]
  • Fucini P [3]
  • Gil-carton D [3]
  • Gong HR [3]
  • Goto S [3]
  • Hase Y [3]
  • Himeno H [3]
  • Hirata Y [3]

Author by ORCID

  • Srivastava SS [57]
  • Gong H [43]
  • Berezuk AM [39]
  • Dimitrov DS [39]
  • Liu F [39]
  • Subramaniam S [39]
  • Saville JW [26]
  • Zhu X [26]
  • Lai Y [25]
  • Guddat LW [22]
  • Da Silva Castanha Pm [21]
  • Treat BR [21]
  • Gao Y [20]
  • Ran T [19]
  • Rao Z [9]
  • Leopold K [8]
  • Demers JP [8]
  • Li W [8]
  • Mannar D [8]
  • Tuttle KS [8]
  • Chittori S [8]
  • Gilbert LA [7]
  • Winters A [7]
  • Zhou SK [7]
  • Cheng Y [7]
  • Tang Y [7]
  • Goodarzi H [7]
  • Yu J [7]
  • Navickas A [7]
  • Ansel KM [7]
  • Zhou X [6]
  • Wang Q [5]
  • Wang L [4]
  • Geng Y [4]
  • Wang J [4]
  • Cao Y [4]
  • Kaminishi T [3]
  • Zhou S [3]
  • Connell SR [3]
  • Jiang S [3]
  • Cai G [3]
  • Yang Z [3]
  • Lu L [3]
  • Xie Y [3]
  • Iturrioz I [3]
  • Peng C [3]
  • Chen H [3]
  • Ying T [3]
  • Gao Y [3]
  • Mills DJ [3]
  • Yang X [3]
  • Fucini P [3]
  • Lopez-alonso JP [3]
  • Mu A [3]
  • Kurita D [3]
  • Yang X [3]
  • Gil-carton D [3]
  • Guo CJ [2]
  • Zhao W [2]
  • Burma S [2]
  • Chang CC [2]
  • Lu Z [2]
  • Kwon Y [2]
  • Olsen SK [2]
  • Hu HH [2]
  • Greene EC [2]
  • He Y [2]
  • Jasin M [2]
  • Sung P [2]
  • Taylor AB [2]
  • Konig MF [1]
  • Rao Z [1]
  • Harrison PJ [1]
  • Venugopal H [1]
  • Challis GL [1]
  • Papadopoulos N [1]
  • Alkhalaf LM [1]
  • Shui G [1]
  • Paul S [1]
  • Mog BJ [1]
  • Bettegowda C [1]
  • Yu G [1]
  • Guddat LW [1]
  • Tian C [1]
  • Yu L [1]
  • Zhou S [1]
  • Belousoff MJ [1]
  • Pearlman AH [1]
  • Ji W [1]
  • Dinapoli SR [1]
  • Corre C [1]
  • Bhukya H [1]
  • Sun H [1]
  • Styles KM [1]
  • Wong LL [1]
  • Cryle MJ [1]
  • Vogelstein B [1]
  • Gabelli SB [1]
  • Zhou S [1]
  • Miller MS [1]

Journal

  • NAT COMMUN [39]
  • NATURE [19]
  • CELL REP [18]
  • MOL CELL [17]
  • PLOS BIOL [9]
  • NAT METHODS [7]
  • PNAS [4]
  • CELL DISCOV [3]
  • ELIFE [3]
  • NUCLEIC ACIDS RES [3]
  • SIGNAL TRANSDUCT TARGET THER [3]
  • J GENET GENOMICS [2]
  • J VIROL [2]
  • PLOS PATHOG [2]

Software

  • CRYOSPARC [53]
  • RELION [11]
  • GCTF [1]

Microscope

  • FEI TITAN KRIOS [84]
  • TFS KRIOS [31]
  • FEI TECNAI F30 [5]
  • FEI TECNAI ARCTICA [4]
  • TFS GLACIOS [4]
  • FEI TALOS ARCTICA [1]
  • FEI TECNAI 20 [1]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [130]
  • OTHER [1]

Film or detector model

  • FEI FALCON IV 4K X 4K [93]
  • GATAN K3 6K X 4K [15]
  • GATAN K2 SUMMIT 4K X 4K [8]
  • GATAN K3 BIOQUANTUM 6K X 4K [7]
  • FEI FALCON II 4K X 4K [4]
  • DIRECT ELECTRON DE-16 4K X 4K [2]
  • FEI CETA 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • UniProt [111]
  • PDB [109]
  • PDBe-Kb [106]
  • Gene Ontology [104]
  • InterPro [104]
  • Pfam [104]
  • ChEBI [86]
  • AlphaFold DB [84]
  • ChEMBL [84]
  • Complex Portal [77]
  • DrugBank [25]
  • SCOP2 [1]