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author:"Watanabe Y"

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Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Complex [11]
  • Protein [11]
  • Ligand [4]
  • Virus [3]

Organism

  • Eastern equine encephalitis virus [7]
  • Mus musculus [5]
  • Lassa mammarenavirus [2]
  • Human immunodeficiency virus 1 [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Synthetic construct [1]
  • Mayaro virus [1]
  • Homo sapiens [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [12]
  • Subtomogram averaging [1]

Resolution

  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [4]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 250-500 kDa [1]
  • 500-1000 kDa [2]
  • 5-10 MDa [2]
  • > 10 MDa [6]

Release Date

  • 2024 [1]
  • 2022 [3]
  • 2021 [1]
  • 2020 [1]
  • 2018 [7]

Author by name

  • Crispin M [13]
  • Watanabe Y [13]
  • Buda G [7]
  • Chen CL [7]
  • Diamond MS [7]
  • Hasan SS [7]
  • Kim AS [7]
  • Klimstra WB [7]
  • Klose T [7]
  • Rossmann MG [7]
  • Sun C [7]
  • Sanders RW [4]
  • Ward AB [4]
  • Van Gils Mj [4]
  • Antanasijevic A [3]
  • Bijl TPL [3]
  • Brouwer PJM [3]
  • Bukreyev A [3]
  • Burger JA [3]
  • Claireaux M [3]
  • Grobben M [3]
  • Lloyd NM [3]
  • Muller-krauter H [3]
  • Perrett HR [3]
  • Ronk AJ [3]
  • Schriek AI [3]
  • Sliepen K [3]
  • Steijaert TH [3]
  • Strecker T [3]
  • Tejjani K [3]
  • Umotoy JC [3]
  • De Taeye Sw [3]
  • Van Haaren Mm [3]
  • Allen JD [2]
  • Allen ER [1]
  • Arlen-celina L [1]
  • Azar SR [1]
  • Behrens AJ [1]
  • Belij-rammerstorfer S [1]
  • Bowden TA [1]
  • Chawla H [1]
  • Claser C [1]
  • Cottrell CA [1]
  • D Addabbo A [1]
  • Davies H [1]
  • Dejnirattisai W [1]
  • Donnellan F [1]
  • Gilbert SC [1]
  • Green CM [1]
  • Harvey DJ [1]
  • Howe A [1]
  • Huiskonen JT [1]
  • Kim YC [1]
  • Krebs AS [1]
  • Kummerer BM [1]
  • Lambe T [1]
  • Lee M [1]
  • Maker A [1]
  • Mendonca L [1]
  • Mendonca LM [1]
  • Mongkolsapaya J [1]
  • Morris S [1]
  • Polveroni TM [1]
  • Pulido D [1]
  • Reyes-sandoval A [1]
  • Rossi SL [1]
  • Scaringi N [1]
  • Screaton GR [1]
  • Seabright GE [1]
  • Song X [1]
  • Stass R [1]
  • Supasa P [1]
  • Ulaszewska M [1]
  • Vasiljevic S [1]
  • Zhang P [1]
  • De Oliveira Souza R [1]
  • De Val N [1]

Author by ORCID

  • Crispin M [12]
  • Watanabe Y [7]
  • Kim AS [7]
  • Chen CL [7]
  • Ronk AJ [3]
  • Perrett HR [3]
  • Grobben M [3]
  • Strecker T [3]
  • Muller-krauter H [3]
  • Maker A [1]
  • Song X [1]
  • Kummerer BM [1]
  • Harvey DJ [1]
  • D'addabbo A [1]
  • Allen JD [1]
  • Kim YC [1]
  • Van Gils Mj [1]

Journal

  • CELL REP [7]
  • CELL HOST MICROBE [3]
  • BIORXIV [1]
  • NPJ VACCINES [1]
  • STRUCTURE [1]

Software

  • RELION [4]
  • CRYOSPARC [1]

Microscope

  • FEI TITAN KRIOS [11]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [13]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [12]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • PDB [11]
  • UniProt [10]
  • Gene Ontology [8]
  • InterPro [8]
  • PDBe-Kb [8]
  • Pfam [8]
  • AlphaFold DB [6]
  • ChEBI [4]
  • ChEMBL [4]
  • SCOP2 [1]
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Showing 1 - 10 of 13. Page 1 of 2
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EMD-15898
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3D View
Recombinant Mayaro virus-like particle
Release date: Jan. 10, 2024
Resolution: 4.5 Å
EM Method: Single-particle

Kim YC, Watanabe Y, Arlen-Celina L, Song X, de Oliveira Souza R, Stass R, Azar SR, Rossi SL, Claser C, Kummerer BM, Crispin M, Bowden TA, Huiskonen JT, Reyes-Sandoval A

NPJ Vaccines (2024) 9 pp. 243-243 [ DOI: doi:10.1038/s41541-024-01021-9 Pubmed: 39690153 ]

EMD-25107
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3D View
Lassa virus glycoprotein construct Josiah GPCysR4 recovered from GPC-I53-50 nanoparticle by localized reconstruction
Release date: Oct. 12, 2022
Resolution: 3.97 Å
EM Method: Single-particle
Fitted PDBs: 7sgd
Q-score: 0.366

Brouwer PJM, Antanasijevic A, Ronk AJ, Muller-Krauter H, Watanabe Y, Claireaux M, Perrett HR, Bijl TPL, Grobben M, Umotoy JC, Schriek AI, Burger JA, Tejjani K, Lloyd NM, Steijaert TH, van Haaren MM, Sliepen K, de Taeye SW, van Gils MJ, Crispin M, Strecker T, Bukreyev A, Ward AB, Sanders RW

Cell Host Microbe (2022) 30 pp. 1759- [ DOI: doi:10.1016/j.chom.2022.10.018 Pubmed: 36400021 ]

EMD-25108
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3D View
I53-50 nanoparticle core reconstructed from GPC-I53-50NP by focused refinement
Release date: Oct. 12, 2022
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 7sge
Q-score: 0.479

Brouwer PJM, Antanasijevic A, Ronk AJ, Muller-Krauter H, Watanabe Y, Claireaux M, Perrett HR, Bijl TPL, Grobben M, Umotoy JC, Schriek AI, Burger JA, Tejjani K, Lloyd NM, Steijaert TH, van Haaren MM, Sliepen K, de Taeye SW, van Gils MJ, Crispin M, Strecker T, Bukreyev A, Ward AB, Sanders RW

Cell Host Microbe (2022) 30 pp. 1759- [ DOI: doi:10.1016/j.chom.2022.10.018 Pubmed: 36400021 ]

EMD-25109
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3D View
Lassa virus glycoprotein construct Josiah GPC-I53-50A in complex with LAVA01 antibody
Release date: Oct. 12, 2022
Resolution: 4.41 Å
EM Method: Single-particle
Fitted PDBs: 7sgf
Q-score: 0.292

Brouwer PJM, Antanasijevic A, Ronk AJ, Muller-Krauter H, Watanabe Y, Claireaux M, Perrett HR, Bijl TPL, Grobben M, Umotoy JC, Schriek AI, Burger JA, Tejjani K, Lloyd NM, Steijaert TH, van Haaren MM, Sliepen K, de Taeye SW, van Gils MJ, Crispin M, Strecker T, Bukreyev A, Ward AB, Sanders RW

Cell Host Microbe (2022) 30 pp. 1759- [ DOI: doi:10.1016/j.chom.2022.10.018 Pubmed: 36400021 ]

EMD-12530
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Subtomogram average of ChAdOx1 nCoV-19/AZD1222 derived SARS-CoV-2 spike glycoprotein
Release date: April 7, 2021
Resolution: 11.6 Å
EM Method: Subtomogram averaging

Watanabe Y, Mendonca L, Allen ER, Howe A, Lee M, Allen JD, Chawla H, Pulido D, Donnellan F, Davies H, Ulaszewska M, Belij-Rammerstorfer S, Morris S, Krebs AS, Dejnirattisai W, Mongkolsapaya J, Supasa P, Screaton GR, Green CM, Lambe T, Zhang P, Gilbert SC, Crispin M

bioRxiv (2021) [ Pubmed: 33501433 DOI: doi:10.1101/2021.01.15.426463 ]

EMD-20224
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BG505 SOSIP.664 with 2G12 Fab2
Release date: May 20, 2020
Resolution: 3.79 Å
EM Method: Single-particle
Fitted PDBs: 6ozc
Q-score: 0.372

Seabright GE, Cottrell CA, van Gils MJ, D'addabbo A, Harvey DJ, Behrens AJ, Allen JD, Watanabe Y, Scaringi N, Polveroni TM, Maker A, Vasiljevic S, de Val N, Sanders RW, Ward AB, Crispin M

Structure (2020) 28 pp. 897- [ Pubmed: 32433992 DOI: doi:10.1016/j.str.2020.04.022 ]

EMD-9249
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CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-42 antibody
Release date: Dec. 19, 2018
Resolution: 7.7 Å
EM Method: Single-particle
Fitted PDBs: 6mui
Q-score: 0.075

Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

Cell Rep (2018) 25 pp. 3136-3147.e5 [ Pubmed: 30540945 DOI: doi:10.1016/j.celrep.2018.11.067 ]

EMD-9274
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CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-3 antibody
Release date: Dec. 19, 2018
Resolution: 7.3 Å
EM Method: Single-particle
Fitted PDBs: 6mw9
Q-score: 0.097

Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

Cell Rep (2018) 25 pp. 3136-3147.e5 [ Pubmed: 30540945 DOI: doi:10.1016/j.celrep.2018.11.067 ]

EMD-9275
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CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-5 antibody
Release date: Dec. 19, 2018
Resolution: 7.5 Å
EM Method: Single-particle
Fitted PDBs: 6mwc
Q-score: 0.087

Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

Cell Rep (2018) 25 pp. 3136-3147.e5 [ Pubmed: 30540945 DOI: doi:10.1016/j.celrep.2018.11.067 ]

EMD-9278
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CryoEM structure of Chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-58 Antibody
Release date: Dec. 19, 2018
Resolution: 7.3 Å
EM Method: Single-particle
Fitted PDBs: 6mwv
Q-score: 0.092

Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

Cell Rep (2018) 25 pp. 3136-3147.e5 [ Pubmed: 30540945 DOI: doi:10.1016/j.celrep.2018.11.067 ]

Sort by: Download
Showing 1 - 10 of 13. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Complex [11]
  • Protein [11]
  • Ligand [4]
  • Virus [3]

Organism

  • Eastern equine encephalitis virus [7]
  • Mus musculus [5]
  • Lassa mammarenavirus [2]
  • Human immunodeficiency virus 1 [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Synthetic construct [1]
  • Mayaro virus [1]
  • Homo sapiens [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [12]
  • Subtomogram averaging [1]

Resolution

  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [4]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 250-500 kDa [1]
  • 500-1000 kDa [2]
  • 5-10 MDa [2]
  • > 10 MDa [6]

Release Date

  • 2024 [1]
  • 2022 [3]
  • 2021 [1]
  • 2020 [1]
  • 2018 [7]

Author by name

  • Crispin M [13]
  • Watanabe Y [13]
  • Buda G [7]
  • Chen CL [7]
  • Diamond MS [7]
  • Hasan SS [7]
  • Kim AS [7]
  • Klimstra WB [7]
  • Klose T [7]
  • Rossmann MG [7]
  • Sun C [7]
  • Sanders RW [4]
  • Ward AB [4]
  • Van Gils Mj [4]
  • Antanasijevic A [3]
  • Bijl TPL [3]
  • Brouwer PJM [3]
  • Bukreyev A [3]
  • Burger JA [3]
  • Claireaux M [3]
  • Grobben M [3]
  • Lloyd NM [3]
  • Muller-krauter H [3]
  • Perrett HR [3]
  • Ronk AJ [3]
  • Schriek AI [3]
  • Sliepen K [3]
  • Steijaert TH [3]
  • Strecker T [3]
  • Tejjani K [3]
  • Umotoy JC [3]
  • De Taeye Sw [3]
  • Van Haaren Mm [3]
  • Allen JD [2]
  • Allen ER [1]
  • Arlen-celina L [1]
  • Azar SR [1]
  • Behrens AJ [1]
  • Belij-rammerstorfer S [1]
  • Bowden TA [1]
  • Chawla H [1]
  • Claser C [1]
  • Cottrell CA [1]
  • D Addabbo A [1]
  • Davies H [1]
  • Dejnirattisai W [1]
  • Donnellan F [1]
  • Gilbert SC [1]
  • Green CM [1]
  • Harvey DJ [1]
  • Howe A [1]
  • Huiskonen JT [1]
  • Kim YC [1]
  • Krebs AS [1]
  • Kummerer BM [1]
  • Lambe T [1]
  • Lee M [1]
  • Maker A [1]
  • Mendonca L [1]
  • Mendonca LM [1]
  • Mongkolsapaya J [1]
  • Morris S [1]
  • Polveroni TM [1]
  • Pulido D [1]
  • Reyes-sandoval A [1]
  • Rossi SL [1]
  • Scaringi N [1]
  • Screaton GR [1]
  • Seabright GE [1]
  • Song X [1]
  • Stass R [1]
  • Supasa P [1]
  • Ulaszewska M [1]
  • Vasiljevic S [1]
  • Zhang P [1]
  • De Oliveira Souza R [1]
  • De Val N [1]

Author by ORCID

  • Crispin M [12]
  • Watanabe Y [7]
  • Kim AS [7]
  • Chen CL [7]
  • Ronk AJ [3]
  • Perrett HR [3]
  • Grobben M [3]
  • Strecker T [3]
  • Muller-krauter H [3]
  • Maker A [1]
  • Song X [1]
  • Kummerer BM [1]
  • Harvey DJ [1]
  • D'addabbo A [1]
  • Allen JD [1]
  • Kim YC [1]
  • Van Gils Mj [1]

Journal

  • CELL REP [7]
  • CELL HOST MICROBE [3]
  • BIORXIV [1]
  • NPJ VACCINES [1]
  • STRUCTURE [1]

Software

  • RELION [4]
  • CRYOSPARC [1]

Microscope

  • FEI TITAN KRIOS [11]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [13]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [12]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • PDB [11]
  • UniProt [10]
  • Gene Ontology [8]
  • InterPro [8]
  • PDBe-Kb [8]
  • Pfam [8]
  • AlphaFold DB [6]
  • ChEBI [4]
  • ChEMBL [4]
  • SCOP2 [1]