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author:"Umotoy JC"

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Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • Protein [5]
  • Ligand [4]

Organism

  • Homo sapiens [8]
  • Lassa mammarenavirus [2]
  • Human immunodeficiency virus 1 [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Synthetic construct [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 3Å and < 4Å [4]
  • ≥ 4Å and < 5Å [1]
  • ≥ 20Å and < 30Å [6]

Model molecular weight

  • 250-500 kDa [2]
  • 500-1000 kDa [2]
  • 5-10 MDa [1]

Release Date

  • 2025 [1]
  • 2022 [10]

Author by name

  • Burger JA [11]
  • Sanders RW [11]
  • Umotoy JC [11]
  • Ward AB [11]
  • Van Gils Mj [11]
  • Ozorowski G [8]
  • Turner HL [8]
  • Wilson IA [8]
  • Bijl T [7]
  • Burton DR [7]
  • Dorning J [7]
  • Farokhi E [7]
  • Gao H [7]
  • Ghalaiyini R [7]
  • Labranche CC [7]
  • Montefiori DC [7]
  • Rijkhold Meesters Tg [7]
  • Schorcht A [7]
  • Schuitemaker H [7]
  • Seaman MS [7]
  • Sok D [7]
  • Stanfield RL [7]
  • Torrents De La Pena A [7]
  • Ward A [7]
  • Van Schooten J [7]
  • Van Den Kerkhof Tlgm [7]
  • Van Der Woude P [7]
  • Bukreyev A [4]
  • Schriek AI [4]
  • De Taeye Sw [4]
  • Antanasijevic A [3]
  • Bijl TPL [3]
  • Brouwer PJM [3]
  • Claireaux M [3]
  • Crispin M [3]
  • Grobben M [3]
  • Lloyd NM [3]
  • Muller-krauter H [3]
  • Perrett HR [3]
  • Ronk AJ [3]
  • Sliepen K [3]
  • Steijaert TH [3]
  • Strecker T [3]
  • Tejjani K [3]
  • Watanabe Y [3]
  • Van Haaren Mm [3]
  • Beaumont T [1]
  • Beauverger G [1]
  • Caniels TG [1]
  • Desgagnes R [1]
  • Faye L [1]
  • Fitchette AC [1]
  • Gomord V [1]
  • Grunwald-gruber C [1]
  • Kuzmina NA [1]
  • Mirande L [1]
  • Morel B [1]
  • Poniman M [1]
  • Stordeur V [1]
  • Vezina LP [1]
  • Yuan M [1]
  • Zhu X [1]
  • De Bree G [1]

Author by ORCID

  • Torrents De La Pena A [7]
  • Stanfield RL [7]
  • Van Schooten J [7]
  • Schorcht A [7]
  • Van Gils Mj [7]
  • Ronk AJ [3]
  • Crispin M [3]
  • Perrett HR [3]
  • Grobben M [3]
  • Strecker T [3]
  • Muller-krauter H [3]
  • Gomord V [1]
  • De Taeye Sw [1]
  • Yuan M [1]

Journal

  • PLOS PATHOG [7]
  • CELL HOST MICROBE [3]
  • PLANT BIOTECHNOL J [1]

Software

  • RELION [9]
  • CRYOSPARC [2]

Microscope

  • FEI TECNAI F20 [6]
  • FEI TITAN KRIOS [3]
  • FEI TALOS ARCTICA [2]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • TVIPS TEMCAM-F416 4K X 4K [6]
  • GATAN K2 SUMMIT 4K X 4K [5]

External links

  • PDB [5]
  • ChEBI [4]
  • ChEMBL [4]
  • UniProt [4]
  • AlphaFold DB [2]
  • PDBe-Kb [2]
  • Complex Portal [1]
  • Gene Ontology [1]
  • InterPro [1]
  • Pfam [1]
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Showing 1 - 10 of 11. Page 1 of 2
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EMD-43794
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3D View
COVA2-15 fragment antigen binding in complex with SARS-CoV-2 6P-mut7 S protein
Release date: Jan. 29, 2025
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9aru

de Taeye SW, Faye L, Morel B, Schriek AI, Umotoy JC, Yuan M, Kuzmina NA, Turner HL, Zhu X, Grunwald-Gruber C, Poniman M, Burger JA, Caniels TG, Fitchette AC, Desgagnes R, Stordeur V, Mirande L, Beauverger G, de Bree G, Ozorowski G, Ward AB, Wilson IA, Bukreyev A, Sanders RW, Vezina LP, Beaumont T, van Gils MJ, Gomord V

Plant Biotechnol J (2025) 23 pp. 4-16 [ Pubmed: 39563066 DOI: doi:10.1111/pbi.14458 ]

EMD-14784
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AMC009 SOSIPv5.2 ACS110 Fab
Release date: Nov. 2, 2022
Resolution: 25.0 Å
EM Method: Single-particle

van Schooten J, Schorcht A, Farokhi E, Umotoy JC, Gao H, van den Kerkhof TLGM, Dorning J, Rijkhold Meesters TG, van der Woude P, Burger JA, Bijl T, Ghalaiyini R, Torrents de la Pena A, Turner HL, Labranche CC, Stanfield RL, Sok D, Schuitemaker H, Montefiori DC, Burton DR, Ozorowski G, Seaman MS, Wilson IA, Sanders RW, Ward AB, van Gils MJ

PLoS Pathog (2022) 18 pp. e1010945-e1010945 [ DOI: doi:10.1371/journal.ppat.1010945 Pubmed: 36395347 ]

EMD-14785
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AMC009 SOSIPv.52 in complex with ACS114 Fab
Release date: Nov. 2, 2022
Resolution: 25.0 Å
EM Method: Single-particle

van Schooten J, Schorcht A, Farokhi E, Umotoy JC, Gao H, van den Kerkhof TLGM, Dorning J, Rijkhold Meesters TG, van der Woude P, Burger JA, Bijl T, Ghalaiyini R, Torrents de la Pena A, Turner HL, Labranche CC, Stanfield RL, Sok D, Schuitemaker H, Montefiori DC, Burton DR, Ozorowski G, Seaman MS, Wilson IA, Sanders RW, Ward AB, van Gils MJ

PLoS Pathog (2022) 18 pp. e1010945-e1010945 [ DOI: doi:10.1371/journal.ppat.1010945 Pubmed: 36395347 ]

EMD-14786
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AMC009 SOSIPv5.2 in complex with ACS117 Fab
Release date: Nov. 2, 2022
Resolution: 25.0 Å
EM Method: Single-particle

van Schooten J, Schorcht A, Farokhi E, Umotoy JC, Gao H, van den Kerkhof TLGM, Dorning J, Rijkhold Meesters TG, van der Woude P, Burger JA, Bijl T, Ghalaiyini R, Torrents de la Pena A, Turner HL, Labranche CC, Stanfield RL, Sok D, Schuitemaker H, Montefiori DC, Burton DR, Ozorowski G, Seaman MS, Wilson IA, Sanders RW, Ward AB, van Gils MJ

PLoS Pathog (2022) 18 pp. e1010945-e1010945 [ DOI: doi:10.1371/journal.ppat.1010945 Pubmed: 36395347 ]

EMD-14787
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AMC009 SOSIPv5.2 in complex with ACS122 Fab
Release date: Nov. 2, 2022
Resolution: 25.0 Å
EM Method: Single-particle

van Schooten J, Schorcht A, Farokhi E, Umotoy JC, Gao H, van den Kerkhof TLGM, Dorning J, Rijkhold Meesters TG, van der Woude P, Burger JA, Bijl T, Ghalaiyini R, Torrents de la Pena A, Turner HL, Labranche CC, Stanfield RL, Sok D, Schuitemaker H, Montefiori DC, Burton DR, Ozorowski G, Seaman MS, Wilson IA, Sanders RW, Ward AB, van Gils MJ

PLoS Pathog (2022) 18 pp. e1010945-e1010945 [ DOI: doi:10.1371/journal.ppat.1010945 Pubmed: 36395347 ]

EMD-14788
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3D View
AMC009 SOSIPv5.2 in complex with ACS125 Fab
Release date: Nov. 2, 2022
Resolution: 25.0 Å
EM Method: Single-particle

van Schooten J, Schorcht A, Farokhi E, Umotoy JC, Gao H, van den Kerkhof TLGM, Dorning J, Rijkhold Meesters TG, van der Woude P, Burger JA, Bijl T, Ghalaiyini R, Torrents de la Pena A, Turner HL, Labranche CC, Stanfield RL, Sok D, Schuitemaker H, Montefiori DC, Burton DR, Ozorowski G, Seaman MS, Wilson IA, Sanders RW, Ward AB, van Gils MJ

PLoS Pathog (2022) 18 pp. e1010945-e1010945 [ DOI: doi:10.1371/journal.ppat.1010945 Pubmed: 36395347 ]

EMD-14789
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3D View
AMC009 SOSIPv5.2 in complex with ACS131 Fab
Release date: Nov. 2, 2022
Resolution: 25.0 Å
EM Method: Single-particle

van Schooten J, Schorcht A, Farokhi E, Umotoy JC, Gao H, van den Kerkhof TLGM, Dorning J, Rijkhold Meesters TG, van der Woude P, Burger JA, Bijl T, Ghalaiyini R, Torrents de la Pena A, Turner HL, Labranche CC, Stanfield RL, Sok D, Schuitemaker H, Montefiori DC, Burton DR, Ozorowski G, Seaman MS, Wilson IA, Sanders RW, Ward AB, van Gils MJ

PLoS Pathog (2022) 18 pp. e1010945-e1010945 [ DOI: doi:10.1371/journal.ppat.1010945 Pubmed: 36395347 ]

EMD-25107
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Lassa virus glycoprotein construct Josiah GPCysR4 recovered from GPC-I53-50 nanoparticle by localized reconstruction
Release date: Oct. 12, 2022
Resolution: 3.97 Å
EM Method: Single-particle
Fitted PDBs: 7sgd
Q-score: 0.366

Brouwer PJM, Antanasijevic A, Ronk AJ, Muller-Krauter H, Watanabe Y, Claireaux M, Perrett HR, Bijl TPL, Grobben M, Umotoy JC, Schriek AI, Burger JA, Tejjani K, Lloyd NM, Steijaert TH, van Haaren MM, Sliepen K, de Taeye SW, van Gils MJ, Crispin M, Strecker T, Bukreyev A, Ward AB, Sanders RW

Cell Host Microbe (2022) 30 pp. 1759- [ DOI: doi:10.1016/j.chom.2022.10.018 Pubmed: 36400021 ]

EMD-25108
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I53-50 nanoparticle core reconstructed from GPC-I53-50NP by focused refinement
Release date: Oct. 12, 2022
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 7sge
Q-score: 0.479

Brouwer PJM, Antanasijevic A, Ronk AJ, Muller-Krauter H, Watanabe Y, Claireaux M, Perrett HR, Bijl TPL, Grobben M, Umotoy JC, Schriek AI, Burger JA, Tejjani K, Lloyd NM, Steijaert TH, van Haaren MM, Sliepen K, de Taeye SW, van Gils MJ, Crispin M, Strecker T, Bukreyev A, Ward AB, Sanders RW

Cell Host Microbe (2022) 30 pp. 1759- [ DOI: doi:10.1016/j.chom.2022.10.018 Pubmed: 36400021 ]

EMD-25109
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Lassa virus glycoprotein construct Josiah GPC-I53-50A in complex with LAVA01 antibody
Release date: Oct. 12, 2022
Resolution: 4.41 Å
EM Method: Single-particle
Fitted PDBs: 7sgf
Q-score: 0.292

Brouwer PJM, Antanasijevic A, Ronk AJ, Muller-Krauter H, Watanabe Y, Claireaux M, Perrett HR, Bijl TPL, Grobben M, Umotoy JC, Schriek AI, Burger JA, Tejjani K, Lloyd NM, Steijaert TH, van Haaren MM, Sliepen K, de Taeye SW, van Gils MJ, Crispin M, Strecker T, Bukreyev A, Ward AB, Sanders RW

Cell Host Microbe (2022) 30 pp. 1759- [ DOI: doi:10.1016/j.chom.2022.10.018 Pubmed: 36400021 ]

Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • Protein [5]
  • Ligand [4]

Organism

  • Homo sapiens [8]
  • Lassa mammarenavirus [2]
  • Human immunodeficiency virus 1 [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Synthetic construct [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 3Å and < 4Å [4]
  • ≥ 4Å and < 5Å [1]
  • ≥ 20Å and < 30Å [6]

Model molecular weight

  • 250-500 kDa [2]
  • 500-1000 kDa [2]
  • 5-10 MDa [1]

Release Date

  • 2025 [1]
  • 2022 [10]

Author by name

  • Burger JA [11]
  • Sanders RW [11]
  • Umotoy JC [11]
  • Ward AB [11]
  • Van Gils Mj [11]
  • Ozorowski G [8]
  • Turner HL [8]
  • Wilson IA [8]
  • Bijl T [7]
  • Burton DR [7]
  • Dorning J [7]
  • Farokhi E [7]
  • Gao H [7]
  • Ghalaiyini R [7]
  • Labranche CC [7]
  • Montefiori DC [7]
  • Rijkhold Meesters Tg [7]
  • Schorcht A [7]
  • Schuitemaker H [7]
  • Seaman MS [7]
  • Sok D [7]
  • Stanfield RL [7]
  • Torrents De La Pena A [7]
  • Ward A [7]
  • Van Schooten J [7]
  • Van Den Kerkhof Tlgm [7]
  • Van Der Woude P [7]
  • Bukreyev A [4]
  • Schriek AI [4]
  • De Taeye Sw [4]
  • Antanasijevic A [3]
  • Bijl TPL [3]
  • Brouwer PJM [3]
  • Claireaux M [3]
  • Crispin M [3]
  • Grobben M [3]
  • Lloyd NM [3]
  • Muller-krauter H [3]
  • Perrett HR [3]
  • Ronk AJ [3]
  • Sliepen K [3]
  • Steijaert TH [3]
  • Strecker T [3]
  • Tejjani K [3]
  • Watanabe Y [3]
  • Van Haaren Mm [3]
  • Beaumont T [1]
  • Beauverger G [1]
  • Caniels TG [1]
  • Desgagnes R [1]
  • Faye L [1]
  • Fitchette AC [1]
  • Gomord V [1]
  • Grunwald-gruber C [1]
  • Kuzmina NA [1]
  • Mirande L [1]
  • Morel B [1]
  • Poniman M [1]
  • Stordeur V [1]
  • Vezina LP [1]
  • Yuan M [1]
  • Zhu X [1]
  • De Bree G [1]

Author by ORCID

  • Torrents De La Pena A [7]
  • Stanfield RL [7]
  • Van Schooten J [7]
  • Schorcht A [7]
  • Van Gils Mj [7]
  • Ronk AJ [3]
  • Crispin M [3]
  • Perrett HR [3]
  • Grobben M [3]
  • Strecker T [3]
  • Muller-krauter H [3]
  • Gomord V [1]
  • De Taeye Sw [1]
  • Yuan M [1]

Journal

  • PLOS PATHOG [7]
  • CELL HOST MICROBE [3]
  • PLANT BIOTECHNOL J [1]

Software

  • RELION [9]
  • CRYOSPARC [2]

Microscope

  • FEI TECNAI F20 [6]
  • FEI TITAN KRIOS [3]
  • FEI TALOS ARCTICA [2]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • TVIPS TEMCAM-F416 4K X 4K [6]
  • GATAN K2 SUMMIT 4K X 4K [5]

External links

  • PDB [5]
  • ChEBI [4]
  • ChEMBL [4]
  • UniProt [4]
  • AlphaFold DB [2]
  • PDBe-Kb [2]
  • Complex Portal [1]
  • Gene Ontology [1]
  • InterPro [1]
  • Pfam [1]