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author:"Soderlund-Venermo M"

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Current Database

  • EMDB [21]

Current status

  • REL [21]

Sample type

  • Protein [21]
  • Virus [21]
  • Ligand [1]

Organism

  • Bufavirus-1 [5]
  • Primate bocaparvovirus 2 [5]
  • Primate bocaparvovirus 1 [3]
  • Carnivore amdoparvovirus 1 [2]
  • Bufavirus-2 [1]
  • Bufavirus-3 [1]
  • Primate bocaparvovirus 1 [1]
  • Tusavirus 1 [1]
  • Primate protoparvovirus 3 [1]
  • Primate tetraparvovirus 1 [1]
  • Primate bocaparvovirus 1 [1]
  • Human bocavirus 4 [1]
  • Primate bocaparvovirus 1 [1]

EM Method

  • Single-particle [21]

Resolution

  • ≥ 2Å and < 3Å [15]
  • ≥ 3Å and < 4Å [6]

Model molecular weight

  • 2-5 MDa [20]

Release Date

  • 2024 [4]
  • 2022 [3]
  • 2021 [6]
  • 2020 [2]
  • 2018 [3]
  • 2017 [3]

Author by name

  • Chipman P [21]
  • Mckenna R [21]
  • Mietzsch M [21]
  • Soderlund-venermo M [21]
  • Agbandje-mckenna M [14]
  • Luo M [12]
  • Sousa D [11]
  • Ilyas M [8]
  • Spear J [8]
  • Kailasan S [7]
  • Kurian J [5]
  • Smith JK [5]
  • Song K [5]
  • Vaisanen E [5]
  • Xu C [5]
  • Bennett A [4]
  • Bennett AD [4]
  • Gulkis M [4]
  • Gulkis MC [4]
  • Jimenez Ybargollin A [4]
  • Baker T [3]
  • Brown K [3]
  • Fu X [3]
  • Garrison J [3]
  • Janssen ME [3]
  • Kantola K [3]
  • Lakshmanan R [3]
  • Qiu J [3]
  • Yu JC [3]
  • Hull JA [2]
  • Lasanajak Y [2]
  • Smith D [2]
  • Bhattacharya N [1]
  • Fakhiri J [1]
  • Grimm D [1]
  • Kapoor A [1]
  • Kucinskaite-kodze I [1]
  • Singh A [1]
  • Zvirbliene A [1]

Author by ORCID

  • Chipman P [21]
  • Mietzsch M [18]
  • Mckenna R [10]
  • Soderlund-venermo M [10]
  • Gulkis M [4]
  • Jimenez Ybargollin A [4]
  • Bennett A [4]
  • Baker T [3]
  • Qiu J [3]
  • Brown K [3]
  • Kucinskaite-kodze I [1]
  • Fakhiri J [1]
  • Kapoor A [1]
  • Kailasan S [1]

Journal

  • VIRUSES [13]
  • J VIROL [8]

Software

  • CISTEM [11]
  • AUTO3DEM [3]
  • CRYOSPARC [3]
  • UCSF CHIMERA [1]

Microscope

  • FEI TITAN KRIOS [17]
  • TFS KRIOS [4]

Electron Source

  • FIELD EMISSION GUN [21]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [12]
  • DIRECT ELECTRON DE-20 5K X 3K [5]
  • DIRECT ELECTRON DE-64 8K X 8K [2]
  • DIRECT ELECTRON APOLLO 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • PDB [20]
  • UniProt [20]
  • Gene Ontology [17]
  • InterPro [17]
  • PDBe-Kb [17]
  • Pfam [17]
  • SCOP2 [8]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
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Showing 1 - 10 of 21. Page 1 of 3
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EMD-45954
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3D View
Bufavirus 1 complexed with 6SLN
Release date: Sept. 18, 2024
Resolution: 2.16 Å
EM Method: Single-particle
Fitted PDBs: 9cuz
Q-score: 0.711

Gulkis M, Luo M, Chipman P, Mietzsch M, Soderlund-Venermo M, Bennett A, McKenna R

Viruses (2024) 16 [ Pubmed: 39205232 DOI: doi:10.3390/v16081258 ]

EMD-45955
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3D View
Bufavirus 1 at pH 7.4
Release date: Aug. 28, 2024
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 9cv0
Q-score: 0.617

Gulkis M, Luo M, Chipman P, Mietzsch M, Soderlund-Venermo M, Bennett A, McKenna R

Viruses (2024) 16 [ Pubmed: 39205232 DOI: doi:10.3390/v16081258 ]

EMD-45958
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3D View
Bufavirus 1 at pH 4.0
Release date: Aug. 28, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9cv9
Q-score: 0.515

Gulkis M, Luo M, Chipman P, Mietzsch M, Soderlund-Venermo M, Bennett A, McKenna R

Viruses (2024) 16 [ Pubmed: 39205232 DOI: doi:10.3390/v16081258 ]

EMD-45973
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Bufavirus 1 at pH 2.6
Release date: Aug. 21, 2024
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 9cws
Q-score: 0.627

Gulkis M, Luo M, Chipman P, Mietzsch M, Soderlund-Venermo M, Bennett A, McKenna R

Viruses (2024) 16 [ Pubmed: 39205232 DOI: doi:10.3390/v16081258 ]

EMD-28514
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The capsid structure of Aleutian Mink Disease Virus
Release date: Nov. 9, 2022
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 8ep2
Q-score: 0.596

Lakshmanan R, Mietzsch M, Jimenez Ybargollin A, Chipman P, Fu X, Qiu J, Soderlund-Venermo M, McKenna R

Viruses (2022) 14 [ DOI: doi:10.3390/v14102219 Pubmed: 36298773 ]

EMD-28515
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Aleutian Mink Disease Virus VP2
Release date: Nov. 9, 2022
Resolution: 3.18 Å
EM Method: Single-particle

Lakshmanan R, Mietzsch M, Jimenez Ybargollin A, Chipman P, Fu X, Qiu J, Soderlund-Venermo M, McKenna R

Viruses (2022) 14 [ DOI: doi:10.3390/v14102219 Pubmed: 36298773 ]

EMD-28522
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The capsid structure of Human Parvovirus 4
Release date: Nov. 9, 2022
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 8ep9
Q-score: 0.487

Lakshmanan R, Mietzsch M, Jimenez Ybargollin A, Chipman P, Fu X, Qiu J, Soderlund-Venermo M, McKenna R

Viruses (2022) 14 [ DOI: doi:10.3390/v14102219 Pubmed: 36298773 ]

EMD-23460
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Gorilla Bocavirus 1 Capsid
Release date: March 17, 2021
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 7lnk
Q-score: 0.635

Yu JC, Mietzsch M, Singh A, Jimenez Ybargollin A, Kailasan S, Chipman P, Bhattacharya N, Fakhiri J, Grimm D, Kapoor A, Kucinskaite-Kodze I, Zvirbliene A, Soderlund-Venermo M, McKenna R, Agbandje-McKenna M

Viruses (2021) 13 [ Pubmed: 33672786 DOI: doi:10.3390/v13020330 ]

EMD-23104
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Human Bocavirus 2 pH 5.5
Release date: Jan. 27, 2021
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 7l0u
Q-score: 0.632

Luo M, Mietzsch M, Chipman P, Song K, Xu C, Spear J, Sousa D, McKenna R, Soderlund-Venermo M, Agbandje-McKenna M

J Virol (2021) 95 [ DOI: doi:10.1128/JVI.02329-20 Pubmed: 33472934 ]

EMD-23105
Download Map
3D View
Human Bocavirus 2 pH 7.4
Release date: Jan. 27, 2021
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 7l0v
Q-score: 0.596

Luo M, Mietzsch M, Chipman P, Song K, Xu C, Spear J, Sousa D, McKenna R, Soderlund-Venermo M, Agbandje-McKenna M

J Virol (2021) 95 [ DOI: doi:10.1128/JVI.02329-20 Pubmed: 33472934 ]

Sort by: Download
Showing 1 - 10 of 21. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [21]

Current status

  • REL [21]

Sample type

  • Protein [21]
  • Virus [21]
  • Ligand [1]

Organism

  • Bufavirus-1 [5]
  • Primate bocaparvovirus 2 [5]
  • Primate bocaparvovirus 1 [3]
  • Carnivore amdoparvovirus 1 [2]
  • Bufavirus-2 [1]
  • Bufavirus-3 [1]
  • Primate bocaparvovirus 1 [1]
  • Tusavirus 1 [1]
  • Primate protoparvovirus 3 [1]
  • Primate tetraparvovirus 1 [1]
  • Primate bocaparvovirus 1 [1]
  • Human bocavirus 4 [1]
  • Primate bocaparvovirus 1 [1]

EM Method

  • Single-particle [21]

Resolution

  • ≥ 2Å and < 3Å [15]
  • ≥ 3Å and < 4Å [6]

Model molecular weight

  • 2-5 MDa [20]

Release Date

  • 2024 [4]
  • 2022 [3]
  • 2021 [6]
  • 2020 [2]
  • 2018 [3]
  • 2017 [3]

Author by name

  • Chipman P [21]
  • Mckenna R [21]
  • Mietzsch M [21]
  • Soderlund-venermo M [21]
  • Agbandje-mckenna M [14]
  • Luo M [12]
  • Sousa D [11]
  • Ilyas M [8]
  • Spear J [8]
  • Kailasan S [7]
  • Kurian J [5]
  • Smith JK [5]
  • Song K [5]
  • Vaisanen E [5]
  • Xu C [5]
  • Bennett A [4]
  • Bennett AD [4]
  • Gulkis M [4]
  • Gulkis MC [4]
  • Jimenez Ybargollin A [4]
  • Baker T [3]
  • Brown K [3]
  • Fu X [3]
  • Garrison J [3]
  • Janssen ME [3]
  • Kantola K [3]
  • Lakshmanan R [3]
  • Qiu J [3]
  • Yu JC [3]
  • Hull JA [2]
  • Lasanajak Y [2]
  • Smith D [2]
  • Bhattacharya N [1]
  • Fakhiri J [1]
  • Grimm D [1]
  • Kapoor A [1]
  • Kucinskaite-kodze I [1]
  • Singh A [1]
  • Zvirbliene A [1]

Author by ORCID

  • Chipman P [21]
  • Mietzsch M [18]
  • Mckenna R [10]
  • Soderlund-venermo M [10]
  • Gulkis M [4]
  • Jimenez Ybargollin A [4]
  • Bennett A [4]
  • Baker T [3]
  • Qiu J [3]
  • Brown K [3]
  • Kucinskaite-kodze I [1]
  • Fakhiri J [1]
  • Kapoor A [1]
  • Kailasan S [1]

Journal

  • VIRUSES [13]
  • J VIROL [8]

Software

  • CISTEM [11]
  • AUTO3DEM [3]
  • CRYOSPARC [3]
  • UCSF CHIMERA [1]

Microscope

  • FEI TITAN KRIOS [17]
  • TFS KRIOS [4]

Electron Source

  • FIELD EMISSION GUN [21]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [12]
  • DIRECT ELECTRON DE-20 5K X 3K [5]
  • DIRECT ELECTRON DE-64 8K X 8K [2]
  • DIRECT ELECTRON APOLLO 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • PDB [20]
  • UniProt [20]
  • Gene Ontology [17]
  • InterPro [17]
  • PDBe-Kb [17]
  • Pfam [17]
  • SCOP2 [8]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]