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author:"Rodriguez JM"

Filter By

Current Database

  • EMDB [16]

Current status

  • REL [16]

Sample type

  • Virus [16]
  • Sample [8]
  • Protein [7]
  • Ligand [2]

Organism

  • Rotavirus a [8]
  • (no species) [4]
  • Rotavirus a [4]
  • Human picobirnavirus [2]
  • Rosellinia necatrix quadrivirus 1 [1]
  • Human picobirnavirus [1]

EM Method

  • Single-particle [13]
  • Subtomogram averaging [3]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [2]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [2]

Model molecular weight

  • 250-500 kDa [3]
  • 5-10 MDa [3]
  • > 10 MDa [2]

Release Date

  • 2024 [4]
  • 2020 [3]
  • 2017 [1]
  • 2014 [8]

Author by name

  • Luque D [16]
  • Rodriguez JM [16]
  • Caston JR [12]
  • Carrascosa JL [9]
  • Chichon FJ [8]
  • Gonzalez-camacho F [8]
  • Martin-forero E [8]
  • Mata CP [8]
  • Gomez-blanco J [5]
  • Asensio-cob D [4]
  • Perez-mata C [4]
  • Vargas J [4]
  • Irigoyen N [3]
  • Ortega-esteban A [3]
  • Rodriguez-espinosa MJ [3]
  • De Pablo Pj [3]
  • Ghabrial SA [1]
  • Gonzalez JM [1]
  • Suzuki N [1]
  • Trus BL [1]

Author by ORCID

  • Luque D [16]
  • Caston JR [12]
  • Rodriguez JM [9]
  • Martin-forero E [8]
  • Chichon FJ [8]
  • Gonzalez-camacho F [8]
  • Mata CP [4]
  • Irigoyen N [3]
  • Ortega-esteban A [3]
  • De Pablo Pj [3]
  • Gonzalez JM [1]
  • Trus BL [1]
  • Gomez-blanco J [1]
  • Suzuki N [1]

Journal

  • PLOS PATHOG [13]
  • J VIROL [3]
  • BIORXIV [1]

Software

  • RELION [8]
  • CTFFIND [5]
  • XMIPP [5]
  • IMOD, XMIPP, TOMO3D [3]

Microscope

  • FEI TECNAI F20 [8]
  • FEI TITAN KRIOS [4]
  • TFS KRIOS [4]

Electron Source

  • FIELD EMISSION GUN [16]

Film or detector model

  • FEI FALCON III 4K X 4K [5]
  • FEI FALCON II 4K X 4K [3]

External links

  • PDB [8]
  • Gene Ontology [7]
  • InterPro [7]
  • PDBe-Kb [7]
  • Pfam [7]
  • UniProt [7]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
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Showing 1 - 10 of 16. Page 1 of 2
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EMD-16954
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3D View
SA11 Rotavirus Non-tripsinized Triple Layered Particle
Release date: Sept. 25, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8olb
Q-score: 0.059

Asensio-Cob D, Mata CP, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D

PLoS Pathog (2025) 21 pp. e1013063-e1013063 [ DOI: doi:10.1371/journal.ppat.1013063 Pubmed: 40794814 ]

EMD-16955
Download Map
3D View
SA11 Rotavirus Trypsinized Triple Layered Particle
Release date: Sept. 25, 2024
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 8olc
Q-score: 0.289

Asensio-Cob D, Mata CP, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D

PLoS Pathog (2025) 21 pp. e1013063-e1013063 [ DOI: doi:10.1371/journal.ppat.1013063 Pubmed: 40794814 ]

EMD-16956
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3D View
Cryo-EM reconstruction of VP4 assembly from SA11 Rotavirus Non-Tripsinized Triple Layered Particle
Release date: Sept. 25, 2024
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8ole
Q-score: 0.117

Asensio-Cob D, Mata CP, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D

PLoS Pathog (2025) 21 pp. e1013063-e1013063 [ DOI: doi:10.1371/journal.ppat.1013063 Pubmed: 40794814 ]

EMD-18655
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3D View
Cryo-EM reconstruction of VP5 /VP8 assembly from SA11 Rotavirus Tripsinized Triple Layered Particle
Release date: Sept. 25, 2024
Resolution: 4.27 Å
EM Method: Single-particle
Fitted PDBs: 8qtz
Q-score: 0.326

Asensio-Cob D, Mata CP, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D

PLoS Pathog (2025) 21 pp. e1013063-e1013063 [ DOI: doi:10.1371/journal.ppat.1013063 Pubmed: 40794814 ]

EMD-11115
Download Map
3D View
Human Picobirnavirus CP VLP
Release date: Sept. 23, 2020
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 6z8d
Q-score: 0.653

Ortega-Esteban A, Mata CP, Rodriguez-Espinosa MJ, Luque D, Irigoyen N, Rodriguez JM, de Pablo PJ, Caston JR

J Virol (2020) 94 [ Pubmed: 32938763 DOI: doi:10.1128/JVI.01542-20 ]

EMD-11116
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3D View
Human Picobirnavirus Ht-CP VLP
Release date: Sept. 23, 2020
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6z8e
Q-score: 0.629

Ortega-Esteban A, Mata CP, Rodriguez-Espinosa MJ, Luque D, Irigoyen N, Rodriguez JM, de Pablo PJ, Caston JR

J Virol (2020) 94 [ Pubmed: 32938763 DOI: doi:10.1128/JVI.01542-20 ]

EMD-11117
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3D View
Human Picobirnavirus D45-CP VLP
Release date: Sept. 16, 2020
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6z8f
Q-score: 0.633

Ortega-Esteban A, Mata CP, Rodriguez-Espinosa MJ, Luque D, Irigoyen N, Rodriguez JM, de Pablo PJ, Caston JR

J Virol (2020) 94 [ Pubmed: 32938763 DOI: doi:10.1128/JVI.01542-20 ]

EMD-3619
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3D View
RnQV1-W1118 empty capsid
Release date: Nov. 29, 2017
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5nd1
Q-score: 0.506

Mata CP, Luque D, Gomez-Blanco J, Rodriguez JM, Gonzalez JM, Suzuki N, Ghabrial SA, Carrascosa JL, Trus BL, Caston JR

PLoS Pathog (2017) 13 pp. e1006755-e1006755 [ DOI: doi:10.1371/journal.ppat.1006755 Pubmed: 29220409 ]

EMD-2573
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3D View
SA11 Rotavirus non-trypsinized Triple Layered Particle
Release date: June 11, 2014
Resolution: 15.4 Å
EM Method: Single-particle

Rodriguez JM, Chichon FJ, Martin-Forero E, Gonzalez-Camacho F, Carrascosa JL, Caston JR, Luque D

PLoS Pathog (2014) 10 pp. e1004157-e1004157 [ DOI: doi:10.1371/journal.ppat.1004157 Pubmed: 24873828 ]

EMD-2574
Download Map
3D View
SA11 Rotavirus trypsinized Triple Layered Particle
Release date: June 11, 2014
Resolution: 14.5 Å
EM Method: Single-particle

Rodriguez JM, Chichon FJ, Martin-Forero E, Gonzalez-Camacho F, Carrascosa JL, Caston JR, Luque D

PLoS Pathog (2014) 10 pp. e1004157-e1004157 [ DOI: doi:10.1371/journal.ppat.1004157 Pubmed: 24873828 ]

Sort by: Download
Showing 1 - 10 of 16. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [16]

Current status

  • REL [16]

Sample type

  • Virus [16]
  • Sample [8]
  • Protein [7]
  • Ligand [2]

Organism

  • Rotavirus a [8]
  • (no species) [4]
  • Rotavirus a [4]
  • Human picobirnavirus [2]
  • Rosellinia necatrix quadrivirus 1 [1]
  • Human picobirnavirus [1]

EM Method

  • Single-particle [13]
  • Subtomogram averaging [3]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [2]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [2]

Model molecular weight

  • 250-500 kDa [3]
  • 5-10 MDa [3]
  • > 10 MDa [2]

Release Date

  • 2024 [4]
  • 2020 [3]
  • 2017 [1]
  • 2014 [8]

Author by name

  • Luque D [16]
  • Rodriguez JM [16]
  • Caston JR [12]
  • Carrascosa JL [9]
  • Chichon FJ [8]
  • Gonzalez-camacho F [8]
  • Martin-forero E [8]
  • Mata CP [8]
  • Gomez-blanco J [5]
  • Asensio-cob D [4]
  • Perez-mata C [4]
  • Vargas J [4]
  • Irigoyen N [3]
  • Ortega-esteban A [3]
  • Rodriguez-espinosa MJ [3]
  • De Pablo Pj [3]
  • Ghabrial SA [1]
  • Gonzalez JM [1]
  • Suzuki N [1]
  • Trus BL [1]

Author by ORCID

  • Luque D [16]
  • Caston JR [12]
  • Rodriguez JM [9]
  • Martin-forero E [8]
  • Chichon FJ [8]
  • Gonzalez-camacho F [8]
  • Mata CP [4]
  • Irigoyen N [3]
  • Ortega-esteban A [3]
  • De Pablo Pj [3]
  • Gonzalez JM [1]
  • Trus BL [1]
  • Gomez-blanco J [1]
  • Suzuki N [1]

Journal

  • PLOS PATHOG [13]
  • J VIROL [3]
  • BIORXIV [1]

Software

  • RELION [8]
  • CTFFIND [5]
  • XMIPP [5]
  • IMOD, XMIPP, TOMO3D [3]

Microscope

  • FEI TECNAI F20 [8]
  • FEI TITAN KRIOS [4]
  • TFS KRIOS [4]

Electron Source

  • FIELD EMISSION GUN [16]

Film or detector model

  • FEI FALCON III 4K X 4K [5]
  • FEI FALCON II 4K X 4K [3]

External links

  • PDB [8]
  • Gene Ontology [7]
  • InterPro [7]
  • PDBe-Kb [7]
  • Pfam [7]
  • UniProt [7]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]