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author:"Palo MZ"

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Current Database

  • EMDB [20]
  • EMPIAR [1]

Current status

  • REL [21]

Sample type

  • Complex [20]
  • RNA [20]
  • Ligand [16]
  • Protein [2]

Organism

  • (no species) [10]
  • Tetrahymena thermophila [9]
  • Oryctolagus cuniculus [2]

EM Method

  • Single-particle [20]

Resolution

  • ≥ 2Å and < 3Å [8]
  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [2]

Model molecular weight

  • 100-250 kDa [16]
  • 250-500 kDa [2]
  • 1-2 MDa [2]

Release Date

  • 2025 [1]
  • 2024 [4]
  • 2023 [10]
  • 2022 [4]
  • 2021 [2]

Author by name

  • Palo MZ [20]
  • Li S [19]
  • Zhang K [19]
  • Pintilie G [17]
  • Zhang X [14]
  • Liu L [10]
  • Chiu W [9]
  • Das R [9]
  • Greg P [6]
  • Kappel K [6]
  • Michael ZP [6]
  • Su Z [6]
  • Palo M [5]
  • Kretsch RC [3]
  • Alarcon R [2]
  • Alonso-gil S [2]
  • Boissier F [2]
  • Case DA [2]
  • Das S [2]
  • Davyt M [2]
  • Guca E [2]
  • Hashem Y [2]
  • Ignatova Z [2]
  • Lima LHF [2]
  • Luo B [2]
  • Pintilie GD [2]
  • Puglisi JD [2]
  • Rangan R [2]
  • Santos L [2]
  • Wei Y [2]
  • Zagrovic B [2]
  • De Lima Lhf [2]
  • Case D [1]

Author by ORCID

  • Palo MZ [20]
  • Zhang K [16]
  • Pintilie G [14]
  • Das R [8]
  • Chiu W [8]
  • Kappel K [6]
  • Su Z [6]
  • Zhang X [4]
  • Li S [4]
  • Alonso-gil S [2]
  • Pintilie GD [2]
  • Rangan R [2]
  • Das S [2]
  • Kretsch RC [2]
  • Luo B [2]
  • Zagrovic B [2]

Journal

  • NAT COMMUN [6]
  • NATURE [4]
  • NUCLEIC ACIDS RES [4]
  • PNAS [4]
  • MOL CELL [2]
  • BIORXIV [1]

Software

  • CRYOSPARC [16]
  • RELION [2]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [16]
  • TFS KRIOS [2]
  • FEI TALOS ARCTICA [1]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [20]

Film or detector model

  • GATAN K3 6K X 4K [13]
  • GATAN K3 BIOQUANTUM 6K X 4K [4]
  • GATAN K2 QUANTUM 4K X 4K [2]
  • GATAN K2 SUMMIT 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [1]

External links

  • PDB [20]
  • ChEBI [16]
  • DrugBank [16]
  • ChEMBL [6]
  • EMPIAR [6]
  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
  • EMDB [1]
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EMPIAR-11844
Related EMDB
EMD-42499 EMD-42498
Cryo-EM of Tetrahymena ribozyme
Release date: Feb. 4, 2025
Dataset size: 3.7 TB
Experiment type: EMDB

Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

bioRxiv (2025) [ DOI: 10.1101/2025.01.23.634578 ]

Image sets:
  • Extracted particles and orientations for final reconstruction of tetrahymena ribozyme.
  • Unaligned multi-frame micrographs of tetrahymena ribozyme.
EMD-42498
Download Map
3D View
Raw data
EMPIAR-11844
Tetrahymena ribozyme with water and magnesium ions
Release date: Nov. 20, 2024
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 9cbw, 9cby
Q-score: 0.5455

Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

Nature (2025) [ DOI: doi:10.1038/s41586-025-08855-w Pubmed: 40068818 ]

EMD-42499
Download Map
3D View
Raw data
EMPIAR-11844
Tetrahymena ribozyme with water and magnesium ions
Release date: Nov. 20, 2024
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9cbu, 9cbx
Q-score: 0.5565

Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

Nature (2025) [ DOI: doi:10.1038/s41586-025-08855-w Pubmed: 40068818 ]

EMD-17329
Download Map
3D View
48S late-stage initiation complex with m6A mRNA
Release date: March 20, 2024
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8p03
Q-score: 0.509

Guca E, Alarcon R, Palo MZ, Santos L, Alonso-Gil S, Davyt M, de Lima LHF, Boissier F, Das S, Zagrovic B, Puglisi JD, Hashem Y, Ignatova Z

Mol Cell (2024) 84 pp. 584-595.e6 [ Pubmed: 38244546 DOI: doi:10.1016/j.molcel.2023.12.028 ]

EMD-17330
Download Map
3D View
48S late-stage initiation complex with non methylated mRNA
Release date: March 20, 2024
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8p09
Q-score: 0.494

Guca E, Alarcon R, Palo MZ, Santos L, Alonso-Gil S, Davyt M, de Lima LHF, Boissier F, Das S, Zagrovic B, Puglisi JD, Hashem Y, Ignatova Z

Mol Cell (2024) 84 pp. 584-595.e6 [ Pubmed: 38244546 DOI: doi:10.1016/j.molcel.2023.12.028 ]

EMD-33736
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Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the first-step self-splicing
Release date: July 5, 2023
Resolution: 4.14 Å
EM Method: Single-particle
Fitted PDBs: 7yc8
Q-score: 0.261

Zhang X, Li S, Pintilie G, Palo MZ, Zhang K

Nucleic Acids Res (2023) 51 pp. 1317-1325 [ Pubmed: 36660826 DOI: doi:10.1093/nar/gkac1268 ]

EMD-33738
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Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the first-step self-splicing
Release date: July 5, 2023
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 7ycg
Q-score: 0.359

Zhang X, Li S, Pintilie G, Palo MZ, Zhang K

Nucleic Acids Res (2023) 51 pp. 1317-1325 [ Pubmed: 36660826 DOI: doi:10.1093/nar/gkac1268 ]

EMD-33739
Download Map
3D View
Cryo-EM structure of Tetrahymena ribozyme conformation 3 undergoing the first-step self-splicing
Release date: July 5, 2023
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7ych
Q-score: 0.373

Zhang X, Li S, Pintilie G, Palo MZ, Zhang K

Nucleic Acids Res (2023) 51 pp. 1317-1325 [ Pubmed: 36660826 DOI: doi:10.1093/nar/gkac1268 ]

EMD-33740
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3D View
Cryo-EM structure of Tetrahymena ribozyme conformation 4 undergoing the first-step self-splicing
Release date: July 5, 2023
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 7yci
Q-score: 0.387

Zhang X, Li S, Pintilie G, Palo MZ, Zhang K

Nucleic Acids Res (2023) 51 pp. 1317-1325 [ Pubmed: 36660826 DOI: doi:10.1093/nar/gkac1268 ]

EMD-33811
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3D View
Cryo-EM structure of Tetrahymena ribozyme conformation 5 undergoing the second-step self-splicing
Release date: March 29, 2023
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7yg8
Q-score: 0.419

Li S, Palo MZ, Zhang X, Pintilie G, Zhang K

Nat Commun (2023) 14 pp. 1294-1294 [ Pubmed: 36928031 DOI: doi:10.1038/s41467-023-36724-5 ]

Sort by: Download
Showing 1 - 10 of 21. Page 1 of 3
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [20]
  • EMPIAR [1]

Current status

  • REL [21]

Sample type

  • Complex [20]
  • RNA [20]
  • Ligand [16]
  • Protein [2]

Organism

  • (no species) [10]
  • Tetrahymena thermophila [9]
  • Oryctolagus cuniculus [2]

EM Method

  • Single-particle [20]

Resolution

  • ≥ 2Å and < 3Å [8]
  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [2]

Model molecular weight

  • 100-250 kDa [16]
  • 250-500 kDa [2]
  • 1-2 MDa [2]

Release Date

  • 2025 [1]
  • 2024 [4]
  • 2023 [10]
  • 2022 [4]
  • 2021 [2]

Author by name

  • Palo MZ [20]
  • Li S [19]
  • Zhang K [19]
  • Pintilie G [17]
  • Zhang X [14]
  • Liu L [10]
  • Chiu W [9]
  • Das R [9]
  • Greg P [6]
  • Kappel K [6]
  • Michael ZP [6]
  • Su Z [6]
  • Palo M [5]
  • Kretsch RC [3]
  • Alarcon R [2]
  • Alonso-gil S [2]
  • Boissier F [2]
  • Case DA [2]
  • Das S [2]
  • Davyt M [2]
  • Guca E [2]
  • Hashem Y [2]
  • Ignatova Z [2]
  • Lima LHF [2]
  • Luo B [2]
  • Pintilie GD [2]
  • Puglisi JD [2]
  • Rangan R [2]
  • Santos L [2]
  • Wei Y [2]
  • Zagrovic B [2]
  • De Lima Lhf [2]
  • Case D [1]

Author by ORCID

  • Palo MZ [20]
  • Zhang K [16]
  • Pintilie G [14]
  • Das R [8]
  • Chiu W [8]
  • Kappel K [6]
  • Su Z [6]
  • Zhang X [4]
  • Li S [4]
  • Alonso-gil S [2]
  • Pintilie GD [2]
  • Rangan R [2]
  • Das S [2]
  • Kretsch RC [2]
  • Luo B [2]
  • Zagrovic B [2]

Journal

  • NAT COMMUN [6]
  • NATURE [4]
  • NUCLEIC ACIDS RES [4]
  • PNAS [4]
  • MOL CELL [2]
  • BIORXIV [1]

Software

  • CRYOSPARC [16]
  • RELION [2]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [16]
  • TFS KRIOS [2]
  • FEI TALOS ARCTICA [1]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [20]

Film or detector model

  • GATAN K3 6K X 4K [13]
  • GATAN K3 BIOQUANTUM 6K X 4K [4]
  • GATAN K2 QUANTUM 4K X 4K [2]
  • GATAN K2 SUMMIT 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [1]

External links

  • PDB [20]
  • ChEBI [16]
  • DrugBank [16]
  • ChEMBL [6]
  • EMPIAR [6]
  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
  • EMDB [1]