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author:"Fujimura A"

Filter By

Current Database

  • EMDB [19]

Current status

  • REL [19]

Sample type

  • Complex [19]
  • Protein [18]
  • Ligand [7]
  • RNA [2]

Organism

  • Homo sapiens [17]
  • Mus musculus [2]
  • Spodoptera frugiperda [2]
  • Synthetic construct [1]

EM Method

  • Single-particle [19]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [16]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 50-100 kDa [3]
  • 100-250 kDa [7]
  • 250-500 kDa [3]

Release Date

  • 2025 [11]
  • 2024 [1]
  • 2023 [7]

Author by name

  • Fujimura A [19]
  • Ohto U [13]
  • Shimizu T [13]
  • Zhang Z [12]
  • Sakaniwa K [7]
  • Ishiguro K [6]
  • Kasai S [6]
  • Shirouzu M [6]
  • Asami J [4]
  • Peng Y [4]
  • Miyake K [3]
  • Shibata T [3]
  • Kitaura J [2]
  • Ekimoto T [1]
  • Ikeguchi M [1]
  • Shigematsu H [1]
  • Yamamoto M [1]

Author by ORCID

  • Shimizu T [7]
  • Ohto U [7]
  • Ishiguro K [6]
  • Shirouzu M [6]
  • Fujimura A [6]
  • Miyake K [3]
  • Kitaura J [2]
  • Shigematsu H [1]
  • Shibata T [1]

Journal

  • COMMUN BIOL [6]
  • NAT COMMUN [5]
  • STRUCTURE [5]
  • NATURE [2]
  • TO BE PUBLISHED [1]

Software

  • RELION [6]
  • CRYOSPARC [1]

Microscope

  • TFS KRIOS [12]
  • FEI TITAN KRIOS [6]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [19]

Film or detector model

  • GATAN K3 6K X 4K [11]
  • GATAN K3 BIOQUANTUM 6K X 4K [8]

External links

  • UniProt [18]
  • AlphaFold DB [13]
  • PDB [13]
  • PDBe-Kb [13]
  • Pfam [13]
  • InterPro [9]
  • Gene Ontology [8]
  • ChEBI [7]
  • ChEMBL [7]
  • Complex Portal [3]
  • DrugBank [3]
Sort by: Download
Showing 1 - 10 of 19. Page 1 of 2
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EMD-62218
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3D View
Cryo-EM structure of LGR4
Release date: Oct. 15, 2025
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 9kb6
Q-score: 0.422

Peng Y, Fujimura A, Asami J, Zhang Z, Shimizu T, Ohto U

Nat Commun (2025) 16 pp. 8337-8337 [ DOI: doi:10.1038/s41467-025-64129-z Pubmed: 41034211 ]

EMD-62219
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3D View
Cryo-EM structure of LGR4-RSPO2 complex
Release date: Oct. 15, 2025
Resolution: 3.97 Å
EM Method: Single-particle
Fitted PDBs: 9kb7
Q-score: 0.338

Peng Y, Fujimura A, Asami J, Zhang Z, Shimizu T, Ohto U

Nat Commun (2025) 16 pp. 8337-8337 [ DOI: doi:10.1038/s41467-025-64129-z Pubmed: 41034211 ]

EMD-62220
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3D View
Cryo-EM structure of LGR4-RSPO2-ZNRF3 complex 1:1:2
Release date: Oct. 15, 2025
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 9kb8
Q-score: 0.462

Peng Y, Fujimura A, Asami J, Zhang Z, Shimizu T, Ohto U

Nat Commun (2025) 16 pp. 8337-8337 [ DOI: doi:10.1038/s41467-025-64129-z Pubmed: 41034211 ]

EMD-62221
Download Map
3D View
Cryo-EM structure of LGR4-RSPO2-ZNRF3 complex 2:2:2
Release date: Oct. 15, 2025
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 9kb9
Q-score: 0.374

Peng Y, Fujimura A, Asami J, Zhang Z, Shimizu T, Ohto U

Nat Commun (2025) 16 pp. 8337-8337 [ DOI: doi:10.1038/s41467-025-64129-z Pubmed: 41034211 ]

EMD-38859
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3D View
The Cryo-EM structure of human tRNA methyltransferase FTSJ1-THADA with substrate tRNA and S-adenosyl homocysteine SAH
Release date: June 18, 2025
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 8y2o
Q-score: 0.582

Ishiguro K, Fujimura A, Shirouzu M

Commun Biol (2025) 8 pp. 893-893 [ DOI: doi:10.1038/s42003-025-08278-3 Pubmed: 40483304 ]

EMD-61701
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3D View
The Cryo-EM structure of human tRNA methyltransferase FTSJ1-THADA Class 1
Release date: June 18, 2025
Resolution: 3.31 Å
EM Method: Single-particle

Ishiguro K, Fujimura A, Shirouzu M

Commun Biol (2025) 8 pp. 893-893 [ DOI: doi:10.1038/s42003-025-08278-3 Pubmed: 40483304 ]

EMD-61702
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The Cryo-EM structure of human tRNA methyltransferase FTSJ1-THADA Class 2a
Release date: June 18, 2025
Resolution: 3.85 Å
EM Method: Single-particle

Ishiguro K, Fujimura A, Shirouzu M

Commun Biol (2025) 8 pp. 893-893 [ DOI: doi:10.1038/s42003-025-08278-3 Pubmed: 40483304 ]

EMD-61703
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3D View
The Cryo-EM structure of human tRNA methyltransferase FTSJ1-THADA Class 2b
Release date: June 18, 2025
Resolution: 4.06 Å
EM Method: Single-particle

Ishiguro K, Fujimura A, Shirouzu M

Commun Biol (2025) 8 pp. 893-893 [ DOI: doi:10.1038/s42003-025-08278-3 Pubmed: 40483304 ]

EMD-61704
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3D View
The Cryo-EM structure of human tRNA methyltransferase FTSJ1-THADA Class 2c
Release date: June 18, 2025
Resolution: 3.78 Å
EM Method: Single-particle

Ishiguro K, Fujimura A, Shirouzu M

Commun Biol (2025) 8 pp. 893-893 [ DOI: doi:10.1038/s42003-025-08278-3 Pubmed: 40483304 ]

EMD-61705
Download Map
3D View
The Cryo-EM structure of human tRNA methyltransferase FTSJ1-THADA Class 2d
Release date: June 18, 2025
Resolution: 3.71 Å
EM Method: Single-particle

Ishiguro K, Fujimura A, Shirouzu M

Commun Biol (2025) 8 pp. 893-893 [ DOI: doi:10.1038/s42003-025-08278-3 Pubmed: 40483304 ]

Sort by: Download
Showing 1 - 10 of 19. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [19]

Current status

  • REL [19]

Sample type

  • Complex [19]
  • Protein [18]
  • Ligand [7]
  • RNA [2]

Organism

  • Homo sapiens [17]
  • Mus musculus [2]
  • Spodoptera frugiperda [2]
  • Synthetic construct [1]

EM Method

  • Single-particle [19]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [16]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 50-100 kDa [3]
  • 100-250 kDa [7]
  • 250-500 kDa [3]

Release Date

  • 2025 [11]
  • 2024 [1]
  • 2023 [7]

Author by name

  • Fujimura A [19]
  • Ohto U [13]
  • Shimizu T [13]
  • Zhang Z [12]
  • Sakaniwa K [7]
  • Ishiguro K [6]
  • Kasai S [6]
  • Shirouzu M [6]
  • Asami J [4]
  • Peng Y [4]
  • Miyake K [3]
  • Shibata T [3]
  • Kitaura J [2]
  • Ekimoto T [1]
  • Ikeguchi M [1]
  • Shigematsu H [1]
  • Yamamoto M [1]

Author by ORCID

  • Shimizu T [7]
  • Ohto U [7]
  • Ishiguro K [6]
  • Shirouzu M [6]
  • Fujimura A [6]
  • Miyake K [3]
  • Kitaura J [2]
  • Shigematsu H [1]
  • Shibata T [1]

Journal

  • COMMUN BIOL [6]
  • NAT COMMUN [5]
  • STRUCTURE [5]
  • NATURE [2]
  • TO BE PUBLISHED [1]

Software

  • RELION [6]
  • CRYOSPARC [1]

Microscope

  • TFS KRIOS [12]
  • FEI TITAN KRIOS [6]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [19]

Film or detector model

  • GATAN K3 6K X 4K [11]
  • GATAN K3 BIOQUANTUM 6K X 4K [8]

External links

  • UniProt [18]
  • AlphaFold DB [13]
  • PDB [13]
  • PDBe-Kb [13]
  • Pfam [13]
  • InterPro [9]
  • Gene Ontology [8]
  • ChEBI [7]
  • ChEMBL [7]
  • Complex Portal [3]
  • DrugBank [3]