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author:"Fraser JS"

Filter By

Current Database

  • EMDB [54]
  • EMPIAR [27]

Current status

  • REL [81]

Sample type

  • Protein [53]
  • Ligand [51]
  • Complex [50]
  • RNA [39]
  • Tissue [4]

Organism

  • Escherichia coli [35]
  • Homo sapiens [9]
  • Mycolicibacterium smegmatis [4]
  • Sus scrofa [4]
  • Streptomyces virginiae [3]
  • Bacillus subtilis [2]
  • Severe acute respiratory syndrome coronavirus [1]
  • Bacillus subtilis [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [49]
  • Helical reconstruction [4]
  • Electron Crystallography [1]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [42]
  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [2]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [1]
  • 100-250 kDa [1]
  • 250-500 kDa [2]
  • 500-1000 kDa [6]
  • 1-2 MDa [31]
  • 2-5 MDa [9]
  • 5-10 MDa [2]

Release Date

  • 2025 [10]
  • 2023 [35]
  • 2022 [6]
  • 2021 [3]
  • 2020 [23]
  • 2019 [4]

Author by name

  • Fraser JS [80]
  • Lee DJ [67]
  • Pellegrino J [55]
  • Seiple IB [54]
  • Li Q [13]
  • Young ID [13]
  • Biel JT [11]
  • Brilot AF [11]
  • Borrelli K [10]
  • Chaires HA [10]
  • Chesneau O [10]
  • Chow D [10]
  • Jacobson MP [10]
  • Ji K [10]
  • Muhle E [10]
  • Murray B [10]
  • Park JE [10]
  • Shinabarger D [10]
  • Tran AA [10]
  • Wang R [10]
  • Wolfe C [10]
  • Zhang N [10]
  • Van Zundert G [10]
  • Bonomi M [9]
  • Fujimori DG [8]
  • Stojkovic V [7]
  • Thompson EM [6]
  • Tsai K [6]
  • Yeon SK [6]
  • Arada A [5]
  • Bajaj P [5]
  • Greene E [5]
  • Greene ER [5]
  • Hoff SE [5]
  • Klepacki D [5]
  • Kollman JM [5]
  • Lee GM [5]
  • Mankin AS [5]
  • Muniz R [5]
  • Muniz RS [5]
  • Szal T [5]
  • Vazquez-laslop N [5]
  • Yamamura H [5]
  • Chen Y [4]
  • Eshun-wilson L [4]
  • Frost A [4]
  • Javid B [4]
  • Lohr T [4]
  • Nachury MV [4]
  • Nogales E [4]
  • Portran D [4]
  • Toso DB [4]
  • Vendruscolo M [4]
  • Zhang R [4]
  • Boyce JH [3]
  • Ecker AK [3]
  • Takahashi Y [3]
  • Tawfik DS [3]
  • Edmonson Q [2]
  • Elad N [2]
  • Fraser J [2]
  • Galonic Fujimori D [2]
  • Jayaraman V [2]
  • Myasnikov AG [2]
  • Sharon M [2]
  • Sun M [2]
  • Vimer S [2]
  • Abate C [1]
  • Agard DA [1]
  • Alessi DR [1]
  • Aquila A [1]
  • Asarnow D [1]
  • Azumaya CM [1]
  • Baillie C [1]
  • Barrio-hernandez I [1]
  • Basler CF [1]
  • Batra J [1]
  • Beltrao P [1]
  • Berardi F [1]
  • Bergstrom DA [1]
  • Bhowmick A [1]
  • Bibel B [1]
  • Biel J [1]
  • Billesbolle C [1]
  • Boezio AA [1]
  • Bouhaddou M [1]
  • Boutet S [1]
  • Bowen A [1]
  • Braberg H [1]
  • Braxton JR [1]
  • Brewster AS [1]
  • Brown F [1]
  • Bulku A [1]
  • Burke D [1]
  • Burness KA [1]
  • Cakir M [1]
  • Cakir Z [1]
  • Campbell MG [1]
  • Carbajo S [1]
  • Carlson-stevermer J [1]

Author by ORCID

  • Fraser JS [49]
  • Lee DJ [33]
  • Pellegrino J [28]
  • Seiple IB [28]
  • Li Q [13]
  • Young ID [13]
  • Jacobson MP [10]
  • Chaires HA [10]
  • Muhle E [10]
  • Wang R [10]
  • Bonomi M [9]
  • Fujimori DG [7]
  • Yeon SK [6]
  • Bajaj P [5]
  • Kollman JM [5]
  • Mankin AS [5]
  • Thompson EM [5]
  • Greene E [5]
  • Vazquez-laslop N [5]
  • Hoff SE [5]
  • Eshun-wilson L [4]
  • Nogales E [4]
  • Chen Y [4]
  • Javid B [4]
  • Lohr T [4]
  • Nachury MV [4]
  • Ecker AK [3]
  • Takahashi Y [3]
  • Frost A [3]
  • Boyce JH [3]
  • Jayaraman V [2]
  • Vimer S [2]
  • Sharon M [2]
  • Manglik A [1]
  • Mcgregor M [1]
  • Kehrer T [1]
  • Tsui TKM [1]
  • Johnson C [1]
  • Varkaris A [1]
  • Hodder AJ [1]
  • Shun-shion AS [1]
  • Boezio AA [1]
  • Shoichet B [1]
  • Swaney DL [1]
  • Williams DM [1]
  • Flores S [1]
  • Jureka AS [1]
  • Titus EW [1]
  • Garcia-sastre A [1]
  • Kleinman JI [1]
  • Elliott M [1]
  • Raskar T [1]
  • Owens TW [1]
  • Li J [1]
  • Giesel DM [1]
  • Vallet T [1]
  • Jang G [1]
  • Holden K [1]
  • Wilbur J [1]
  • Gordon DE [1]
  • Ideker T [1]
  • Kratochvil HT [1]
  • Billesbolle C [1]
  • Reid E [1]
  • Dorward M [1]
  • Eckhardt M [1]
  • Shaw DE [1]
  • Koralek JD [1]
  • Hastie CJ [1]
  • Haas P [1]
  • Chio CM [1]
  • Yu Z [1]
  • White KM [1]
  • Bibel B [1]
  • Brilot AF [1]
  • Rassen JA [1]
  • Saltzberg D [1]
  • Kubo M [1]
  • Kim K [1]
  • Burke D [1]
  • Mader MM [1]
  • Paulino J [1]
  • Baillie C [1]
  • Liu X [1]
  • Whitis N [1]
  • Dunham A [1]
  • Tummino TA [1]
  • Roth TL [1]
  • Hemphill KR [1]
  • Oki J [1]
  • Khalid MM [1]
  • Frost A [1]
  • Ummadi M [1]
  • Fortin PD [1]
  • Haupt R [1]
  • Diallo A [1]
  • Nango E [1]
  • Giordanetto F [1]
  • Rathore U [1]
  • Soucheray M [1]

Journal

  • TO BE PUBLISHED [23]
  • NATURE [20]
  • BIORXIV [5]
  • NAT STRUCT MOL BIOL [5]
  • PNAS [4]
  • ACTA CRYSTALLOGR D STRUCT BIOL [2]
  • NAT CHEM BIOL [2]
  • NUCLEIC ACIDS RES [2]
  • PROTEIN SCI [2]
  • CANCER DISCOV [1]
  • IUCRJ [1]
  • SCIENCE [1]

Software

  • CISTEM [11]
  • CRYOSPARC [7]
  • EMAN [4]
  • FREALIGN [4]
  • APPION [3]
  • PHENIX [1]

Microscope

  • FEI TITAN KRIOS [44]
  • TFS KRIOS [7]
  • FEI TALOS ARCTICA [3]

Electron Source

  • FIELD EMISSION GUN [54]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [24]
  • GATAN K2 SUMMIT 4K X 4K [17]
  • GATAN K3 6K X 4K [12]
  • TVIPS TEMCAM-F416 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [27]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [27]
  • MICROGRAPHS - SINGLE FRAME [14]

External links

  • AlphaFold DB [53]
  • PDB [53]
  • PDBe-Kb [53]
  • UniProt [53]
  • Gene Ontology [52]
  • Pfam [52]
  • InterPro [47]
  • ChEBI [30]
  • ChEMBL [30]
  • DrugBank [30]
  • EMPIAR [28]
  • EMDB [27]
  • Complex Portal [9]
  • CATH [2]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 81. Page 1 of 9
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EMD-70841
Download Map
3D View
Human glutamine synthetase filament under turnover conditions
Release date: July 2, 2025
Resolution: 2.19 Å
EM Method: Single-particle
Fitted PDBs: 9otm
Q-score: 0.6

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.04.663231 Pubmed: 40631248 ]

EMD-70842
Download Map
3D View
Human glutamine synthetase filament bound to ATP
Release date: July 2, 2025
Resolution: 2.11 Å
EM Method: Single-particle
Fitted PDBs: 9otn
Q-score: 0.714

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.04.663231 Pubmed: 40631248 ]

EMD-70843
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3D View
Human glutamine synthetase decamer under turnover conditions
Release date: July 2, 2025
Resolution: 2.03 Å
EM Method: Single-particle
Fitted PDBs: 9oto
Q-score: 0.623

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.04.663231 Pubmed: 40631248 ]

EMD-70844
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3D View
Human glutamine synthetase R298A decamer under turnover conditions
Release date: July 2, 2025
Resolution: 1.95 Å
EM Method: Single-particle
Fitted PDBs: 9otp
Q-score: 0.638

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.04.663231 Pubmed: 40631248 ]

EMD-70845
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3D View
Human glutamine synthetase filament apo
Release date: July 2, 2025
Resolution: 2.27 Å
EM Method: Single-particle
Fitted PDBs: 9otq
Q-score: 0.644

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.04.663231 Pubmed: 40631248 ]

EMD-45757
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3D View
Human 39S mitoribosome in complex with antibiotic Linezolid
Release date: April 23, 2025
Resolution: 2.62 Å
EM Method: Single-particle
Fitted PDBs: 9cn3
Q-score: 0.525

Bibel B, Raskar T, Couvillion M, Lee M, Kleinman JI, Takeuchi-Tomita N, Churchman LS, Fraser JS, Fujimori DG

Nucleic Acids Res (2025) 53 [ Pubmed: 39907106 DOI: doi:10.1093/nar/gkaf046 ]

EMD-44090
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3D View
HWS19 strain WT mycobacterial ribosome
Release date: March 26, 2025
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 9b1w
Q-score: 0.224

Chen Y, Young ID, Fraser JS, Javid B

To Be Published

EMD-44091
Download Map
3D View
HWS19 strain gidB mutant mycobacterial ribosome
Release date: March 26, 2025
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 9b1x
Q-score: 0.23

Chen Y, Young ID, Fraser JS, Javid B

To Be Published

EMD-44092
Download Map
3D View
WT strain WT mycobacterial ribosome
Release date: March 26, 2025
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 9b1y
Q-score: 0.235

Chen Y, Young ID, Fraser JS, Javid B

To Be Published

EMD-44097
Download Map
3D View
WT strain gidB mutant mycobacterial ribosome
Release date: March 26, 2025
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 9b24
Q-score: 0.241

Chen Y, Young ID, Fraser JS, Javid B

To Be Published

Sort by: Download
Showing 1 - 10 of 81. Page 1 of 9
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [54]
  • EMPIAR [27]

Current status

  • REL [81]

Sample type

  • Protein [53]
  • Ligand [51]
  • Complex [50]
  • RNA [39]
  • Tissue [4]

Organism

  • Escherichia coli [35]
  • Homo sapiens [9]
  • Mycolicibacterium smegmatis [4]
  • Sus scrofa [4]
  • Streptomyces virginiae [3]
  • Bacillus subtilis [2]
  • Severe acute respiratory syndrome coronavirus [1]
  • Bacillus subtilis [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [49]
  • Helical reconstruction [4]
  • Electron Crystallography [1]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [42]
  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [2]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [1]
  • 100-250 kDa [1]
  • 250-500 kDa [2]
  • 500-1000 kDa [6]
  • 1-2 MDa [31]
  • 2-5 MDa [9]
  • 5-10 MDa [2]

Release Date

  • 2025 [10]
  • 2023 [35]
  • 2022 [6]
  • 2021 [3]
  • 2020 [23]
  • 2019 [4]

Author by name

  • Fraser JS [80]
  • Lee DJ [67]
  • Pellegrino J [55]
  • Seiple IB [54]
  • Li Q [13]
  • Young ID [13]
  • Biel JT [11]
  • Brilot AF [11]
  • Borrelli K [10]
  • Chaires HA [10]
  • Chesneau O [10]
  • Chow D [10]
  • Jacobson MP [10]
  • Ji K [10]
  • Muhle E [10]
  • Murray B [10]
  • Park JE [10]
  • Shinabarger D [10]
  • Tran AA [10]
  • Wang R [10]
  • Wolfe C [10]
  • Zhang N [10]
  • Van Zundert G [10]
  • Bonomi M [9]
  • Fujimori DG [8]
  • Stojkovic V [7]
  • Thompson EM [6]
  • Tsai K [6]
  • Yeon SK [6]
  • Arada A [5]
  • Bajaj P [5]
  • Greene E [5]
  • Greene ER [5]
  • Hoff SE [5]
  • Klepacki D [5]
  • Kollman JM [5]
  • Lee GM [5]
  • Mankin AS [5]
  • Muniz R [5]
  • Muniz RS [5]
  • Szal T [5]
  • Vazquez-laslop N [5]
  • Yamamura H [5]
  • Chen Y [4]
  • Eshun-wilson L [4]
  • Frost A [4]
  • Javid B [4]
  • Lohr T [4]
  • Nachury MV [4]
  • Nogales E [4]
  • Portran D [4]
  • Toso DB [4]
  • Vendruscolo M [4]
  • Zhang R [4]
  • Boyce JH [3]
  • Ecker AK [3]
  • Takahashi Y [3]
  • Tawfik DS [3]
  • Edmonson Q [2]
  • Elad N [2]
  • Fraser J [2]
  • Galonic Fujimori D [2]
  • Jayaraman V [2]
  • Myasnikov AG [2]
  • Sharon M [2]
  • Sun M [2]
  • Vimer S [2]
  • Abate C [1]
  • Agard DA [1]
  • Alessi DR [1]
  • Aquila A [1]
  • Asarnow D [1]
  • Azumaya CM [1]
  • Baillie C [1]
  • Barrio-hernandez I [1]
  • Basler CF [1]
  • Batra J [1]
  • Beltrao P [1]
  • Berardi F [1]
  • Bergstrom DA [1]
  • Bhowmick A [1]
  • Bibel B [1]
  • Biel J [1]
  • Billesbolle C [1]
  • Boezio AA [1]
  • Bouhaddou M [1]
  • Boutet S [1]
  • Bowen A [1]
  • Braberg H [1]
  • Braxton JR [1]
  • Brewster AS [1]
  • Brown F [1]
  • Bulku A [1]
  • Burke D [1]
  • Burness KA [1]
  • Cakir M [1]
  • Cakir Z [1]
  • Campbell MG [1]
  • Carbajo S [1]
  • Carlson-stevermer J [1]

Author by ORCID

  • Fraser JS [49]
  • Lee DJ [33]
  • Pellegrino J [28]
  • Seiple IB [28]
  • Li Q [13]
  • Young ID [13]
  • Jacobson MP [10]
  • Chaires HA [10]
  • Muhle E [10]
  • Wang R [10]
  • Bonomi M [9]
  • Fujimori DG [7]
  • Yeon SK [6]
  • Bajaj P [5]
  • Kollman JM [5]
  • Mankin AS [5]
  • Thompson EM [5]
  • Greene E [5]
  • Vazquez-laslop N [5]
  • Hoff SE [5]
  • Eshun-wilson L [4]
  • Nogales E [4]
  • Chen Y [4]
  • Javid B [4]
  • Lohr T [4]
  • Nachury MV [4]
  • Ecker AK [3]
  • Takahashi Y [3]
  • Frost A [3]
  • Boyce JH [3]
  • Jayaraman V [2]
  • Vimer S [2]
  • Sharon M [2]
  • Manglik A [1]
  • Mcgregor M [1]
  • Kehrer T [1]
  • Tsui TKM [1]
  • Johnson C [1]
  • Varkaris A [1]
  • Hodder AJ [1]
  • Shun-shion AS [1]
  • Boezio AA [1]
  • Shoichet B [1]
  • Swaney DL [1]
  • Williams DM [1]
  • Flores S [1]
  • Jureka AS [1]
  • Titus EW [1]
  • Garcia-sastre A [1]
  • Kleinman JI [1]
  • Elliott M [1]
  • Raskar T [1]
  • Owens TW [1]
  • Li J [1]
  • Giesel DM [1]
  • Vallet T [1]
  • Jang G [1]
  • Holden K [1]
  • Wilbur J [1]
  • Gordon DE [1]
  • Ideker T [1]
  • Kratochvil HT [1]
  • Billesbolle C [1]
  • Reid E [1]
  • Dorward M [1]
  • Eckhardt M [1]
  • Shaw DE [1]
  • Koralek JD [1]
  • Hastie CJ [1]
  • Haas P [1]
  • Chio CM [1]
  • Yu Z [1]
  • White KM [1]
  • Bibel B [1]
  • Brilot AF [1]
  • Rassen JA [1]
  • Saltzberg D [1]
  • Kubo M [1]
  • Kim K [1]
  • Burke D [1]
  • Mader MM [1]
  • Paulino J [1]
  • Baillie C [1]
  • Liu X [1]
  • Whitis N [1]
  • Dunham A [1]
  • Tummino TA [1]
  • Roth TL [1]
  • Hemphill KR [1]
  • Oki J [1]
  • Khalid MM [1]
  • Frost A [1]
  • Ummadi M [1]
  • Fortin PD [1]
  • Haupt R [1]
  • Diallo A [1]
  • Nango E [1]
  • Giordanetto F [1]
  • Rathore U [1]
  • Soucheray M [1]

Journal

  • TO BE PUBLISHED [23]
  • NATURE [20]
  • BIORXIV [5]
  • NAT STRUCT MOL BIOL [5]
  • PNAS [4]
  • ACTA CRYSTALLOGR D STRUCT BIOL [2]
  • NAT CHEM BIOL [2]
  • NUCLEIC ACIDS RES [2]
  • PROTEIN SCI [2]
  • CANCER DISCOV [1]
  • IUCRJ [1]
  • SCIENCE [1]

Software

  • CISTEM [11]
  • CRYOSPARC [7]
  • EMAN [4]
  • FREALIGN [4]
  • APPION [3]
  • PHENIX [1]

Microscope

  • FEI TITAN KRIOS [44]
  • TFS KRIOS [7]
  • FEI TALOS ARCTICA [3]

Electron Source

  • FIELD EMISSION GUN [54]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [24]
  • GATAN K2 SUMMIT 4K X 4K [17]
  • GATAN K3 6K X 4K [12]
  • TVIPS TEMCAM-F416 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [27]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [27]
  • MICROGRAPHS - SINGLE FRAME [14]

External links

  • AlphaFold DB [53]
  • PDB [53]
  • PDBe-Kb [53]
  • UniProt [53]
  • Gene Ontology [52]
  • Pfam [52]
  • InterPro [47]
  • ChEBI [30]
  • ChEMBL [30]
  • DrugBank [30]
  • EMPIAR [28]
  • EMDB [27]
  • Complex Portal [9]
  • CATH [2]
  • SCOP2 [1]