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author:"Fitzpatrick JAJ"

Filter By

Current Database

  • EMDB [57]
  • EMPIAR [5]

Current status

  • REL [62]

Sample type

  • Complex [55]
  • Protein [52]
  • Ligand [29]
  • DNA [2]
  • Cellular component [1]
  • Tissue [1]

Organism

  • Homo sapiens [13]
  • Dickeya dadantii [11]
  • Escherichia coli [8]
  • Pseudomonas syringae group genomosp. 3 [6]
  • Severe acute respiratory syndrome coronavirus [6]
  • Mus musculus [5]
  • Arabidopsis thaliana [3]
  • Escherichia coli [3]
  • Rous sarcoma virus [2]
  • Takifugu rubripes [2]
  • Helicobacter hepaticus [2]
  • Takifugu bimaculatus [1]
  • Dickeya chrysanthemi [1]
  • Saccharomyces cerevisiae [1]
  • Drosophila melanogaster [1]
  • Xenopus tropicalis [1]

EM Method

  • Single-particle [56]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [43]
  • ≥ 4Å and < 5Å [7]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 0-50 kDa [3]
  • 100-250 kDa [25]
  • 250-500 kDa [14]
  • 500-1000 kDa [4]

Release Date

  • 2025 [4]
  • 2024 [11]
  • 2023 [7]
  • 2022 [15]
  • 2021 [15]
  • 2020 [10]

Author by name

  • Fitzpatrick JAJ [58]
  • Rau MJ [41]
  • Yuan P [26]
  • Rau M [18]
  • Deng Z [17]
  • Maksaev G [17]
  • Brannigan G [12]
  • Cheng WWL [12]
  • Dietzen NM [12]
  • Petroff Ii Jt [12]
  • Summers B [11]
  • Basore K [9]
  • Mount J [8]
  • Mount JW [8]
  • Summers BT [8]
  • Zhao H [8]
  • Hu H [7]
  • Arcario MJ [6]
  • Burgie ES [6]
  • Case JB [6]
  • Chen LJ [6]
  • Dalal V [6]
  • Deitzen NM [6]
  • Deng B [6]
  • Di Cera E [6]
  • Diamond MS [6]
  • Ellebedy AH [6]
  • Errico JM [6]
  • Fremont DH [6]
  • Grigura V [6]
  • Henin J [6]
  • Joseph TT [6]
  • Liu Z [6]
  • Ma M [6]
  • Mickles AJ [6]
  • Petroff 2Nd Jt [6]
  • Ruben EA [6]
  • Santiago-mcrae E [6]
  • Schmitz AJ [6]
  • Tan BK [6]
  • Trent Moreland K [6]
  • Vierstra D [6]
  • Vierstra RD [6]
  • Washington MS [6]
  • Whelan SPJ [6]
  • Zhang J [5]
  • Chen RE [4]
  • Hurník Konečná T [4]
  • Shi PY [4]
  • Slamková D. [4]
  • Xie Z [4]
  • Haswell ES [3]
  • He Z [3]
  • Schlegel AM [3]
  • Zhao Y [3]
  • Aihara H [2]
  • Bera S [2]
  • Bitter RM [2]
  • Cashikar AG [2]
  • Chen Y [2]
  • Collier AL [2]
  • Engelman AN [2]
  • Feng J [2]
  • Grandgenett DP [2]
  • Holtzman DM [2]
  • Jiang H [2]
  • Kranz RG [2]
  • Lowder EP [2]
  • Mendez DL [2]
  • Oleru AV [2]
  • Pandey KK [2]
  • Randolph GJ [2]
  • Shi K [2]
  • Strickland MR [2]
  • Sutherland MC [2]
  • Sviben S [2]
  • Tillman DE [2]
  • Ulrich JD [2]
  • Wulf 2Nd J [2]
  • Wulf Ii J [2]
  • Zhang R [2]
  • Antony E [1]
  • Bothner B [1]
  • Chadda R [1]
  • Deveryshetty J [1]
  • Englander N [1]
  • Hervas R [1]
  • Karunakaran S [1]
  • Mattice JR [1]
  • Murzin AG [1]
  • Park Y [1]
  • Petroff JT [1]
  • Pokhrel N [1]
  • Sah R [1]
  • Scheres SHW [1]
  • Si K [1]
  • Zhang W [1]

Author by ORCID

  • Fitzpatrick JAJ [35]
  • Yuan P [26]
  • Rau MJ [17]
  • Maksaev G [17]
  • Rau M [15]
  • Cheng WWL [12]
  • Deng Z [11]
  • Mount J [8]
  • Hu H [7]
  • Arcario MJ [6]
  • Basore K [6]
  • Brannigan G [6]
  • Summers B [6]
  • Santiago-mcrae E [6]
  • Tan BK [6]
  • Trent Moreland K [6]
  • Joseph TT [6]
  • Henin J [6]
  • Mickles AJ [6]
  • Di Cera E [5]
  • Ruben EA [5]
  • Zhang J [5]
  • Zhao H [4]
  • Case JB [4]
  • Liu Z [4]
  • Errico JM [4]
  • Schmitz AJ [4]
  • Fremont DH [4]
  • Xie Z [4]
  • Schlegel AM [3]
  • Haswell ES [3]
  • He Z [3]
  • Feng J [2]
  • Aihara H [2]
  • Mendez DL [2]
  • Cashikar AG [2]
  • Strickland MR [2]
  • Pandey KK [2]
  • Kranz RG [2]
  • Tillman DE [2]
  • Sutherland MC [2]
  • Engelman AN [2]
  • Grandgenett DP [2]
  • Lowder EP [2]
  • Shi K [2]
  • Englander N [1]
  • Hervas R [1]
  • Antony E [1]
  • Sah R [1]
  • Bothner B [1]
  • Deveryshetty J [1]

Journal

  • NAT COMMUN [31]
  • BLOOD [6]
  • NAT STRUCT MOL BIOL [6]
  • CELL REP [4]
  • COMMUN BIOL [2]
  • MOL BIOL EVOL [2]
  • MOLECULAR BIOLOGY AND EVOLUTION [2]
  • NAT CHEM BIOL [2]
  • NEURON [2]
  • SCI ADV [2]
  • TO BE PUBLISHED [2]
  • METH CELL BIOL [1]
  • METHODS IN CELL BIOLOGY [1]
  • SCIENCE [1]

Software

  • CRYOSPARC [21]
  • RELION [7]
  • GCTF [3]
  • PHENIX [1]

Microscope

  • FEI TITAN KRIOS [40]
  • TFS GLACIOS [10]
  • TFS KRIOS [6]
  • FEI TITAN [1]

Electron Source

  • FIELD EMISSION GUN [57]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [27]
  • FEI FALCON IV 4K X 4K [23]
  • GATAN K2 QUANTUM 4K X 4K [5]
  • GATAN K2 BASE 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

EMPIAR Experiment type

  • FIB-SEM [4]
  • EMDB [1]

EMPIAR Image category

  • RECONSTRUCTED VOLUMES [4]
  • MICROGRAPHS - SINGLE FRAME [3]

External links

  • PDBe-Kb [52]
  • UniProt [52]
  • AlphaFold DB [48]
  • PDB [46]
  • InterPro [45]
  • Pfam [45]
  • Gene Ontology [38]
  • ChEBI [23]
  • ChEMBL [16]
  • Complex Portal [12]
  • DrugBank [7]
  • EMPIAR [3]
  • EMDB [1]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 62. Page 1 of 7
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EMPIAR-12674
FIB-SEM Mouse kidney tissue samples
Release date: July 8, 2025
Dataset size: 9.1 GB
Experiment type: FIB-SEM

Fitzpatrick JAJ, Czymmek KJ, Hurník Konečná T, Jančík R, Slamková D, Přibyl B, Tomova C, Rotkina L, Burch-Smith T, Sviben S

To Be Published

Image sets:
  • FIB-SEM Kidney tissue dataset
EMPIAR-12675
FIB-SEM Rat brain tissue samples
Release date: July 8, 2025
Dataset size: 829.7 MB
Experiment type: FIB-SEM

Fitzpatrick JAJ, Czymmek KJ, Hurník Konečná T, Jančík R, Slamková D, Přibyl B, Tomova C, Rotkina L, Burch-Smith T, Sviben S

To Be Published

Image sets:
  • FIB-SEM Rat brain tissue dataset
  • FIB-SEM Rat brain tissue dataset - annotation by user
EMPIAR-12660
FIB-SEM Chinese Hamster Ovary cell line sample dataset
Release date: June 30, 2025
Dataset size: 1.3 GB
Experiment type: FIB-SEM

Hurník Konečná T, Jančík R, Slamková D, Přibyl B, Tomova C, Rotkina L, Burch-Smith T, Sviben S, Fitzpatrick JAJ, Czymmek KJ

To Be Published

Image sets:
  • FIB-SEM Chinese Hamster Ovary cell line sample dataset - annotation by user on the first slice
  • FIB-SEM Chinese Hamster Ovary cell line sample dataset
EMPIAR-12661
FIB-SEM Trypanosoma cruzi cell samples
Release date: June 30, 2025
Dataset size: 10.8 GB
Experiment type: FIB-SEM

Hurník Konečná T, Jančík R, Slamková D, Přibyl B, Tomova C, Rotkina L, Burch-Smith T, Sviben S, Fitzpatrick JAJ, Czymmek KJ

To Be Published

Image sets:
  • FIB-SEM Trypanosoma cruzi cell samples - annotation of the first slice
  • FIB-SEM Trypanosoma cruzi cell samples - low-resolution
  • FIB-SEM Trypanosoma cruzi cell samples - high-resolution
  • FIB-SEM Trypanosoma cruzi cell samples - merge images
[Show more]
EMD-41903
Download Map
3D View
Cryo-EM structure of PsBphP in Pr state
Release date: Aug. 21, 2024
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8u4x

Burgie ES, Basore K, Rau MJ, Summers B, Mickles AJ, Grigura V, Fitzpatrick JAJ, Vierstra RD

Nat Commun (2024) 15 pp. 6853-6853 [ DOI: doi:10.1038/s41467-024-50412-y Pubmed: 39127720 ]

EMD-41941
Download Map
3D View
Cryo-EM structure of PsBphP in Pfr state, Dimer of Dimers FL
Release date: Aug. 21, 2024
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8u62

Burgie ES, Basore K, Rau MJ, Summers B, Mickles AJ, Grigura V, Fitzpatrick JAJ, Vierstra RD

Nat Commun (2024) 15 pp. 6853-6853 [ DOI: doi:10.1038/s41467-024-50412-y Pubmed: 39127720 ]

EMD-41942
Download Map
3D View
Cryo-EM structure of PsBphP in Pfr state, Dimer of Dimers PSM only
Release date: Aug. 21, 2024
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 8u63

Burgie ES, Basore K, Rau MJ, Summers B, Mickles AJ, Grigura V, Fitzpatrick JAJ, Vierstra RD

Nat Commun (2024) 15 pp. 6853-6853 [ DOI: doi:10.1038/s41467-024-50412-y Pubmed: 39127720 ]

EMD-41943
Download Map
3D View
Cryo-EM structure of PsBphP in Pfr state, medial PSM only
Release date: Aug. 21, 2024
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 8u64

Burgie ES, Basore K, Rau MJ, Summers B, Mickles AJ, Grigura V, Fitzpatrick JAJ, Vierstra RD

Nat Commun (2024) 15 pp. 6853-6853 [ DOI: doi:10.1038/s41467-024-50412-y Pubmed: 39127720 ]

EMD-41944
Download Map
3D View
Cryo-EM structure of PsBphP in Pfr state, splayed PSM only
Release date: Aug. 21, 2024
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 8u65

Burgie ES, Basore K, Rau MJ, Summers B, Mickles AJ, Grigura V, Fitzpatrick JAJ, Vierstra RD

Nat Commun (2024) 15 pp. 6853-6853 [ DOI: doi:10.1038/s41467-024-50412-y Pubmed: 39127720 ]

EMD-42030
Download Map
3D View
Cryo-EM structure of PsBphP in Pr state, extended DHp
Release date: Aug. 21, 2024
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 8u8z

Burgie ES, Basore K, Rau MJ, Summers B, Mickles AJ, Grigura V, Fitzpatrick JAJ, Vierstra RD

Nat Commun (2024) 15 pp. 6853-6853 [ DOI: doi:10.1038/s41467-024-50412-y Pubmed: 39127720 ]

Sort by: Download
Showing 1 - 10 of 62. Page 1 of 7
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [57]
  • EMPIAR [5]

Current status

  • REL [62]

Sample type

  • Complex [55]
  • Protein [52]
  • Ligand [29]
  • DNA [2]
  • Cellular component [1]
  • Tissue [1]

Organism

  • Homo sapiens [13]
  • Dickeya dadantii [11]
  • Escherichia coli [8]
  • Pseudomonas syringae group genomosp. 3 [6]
  • Severe acute respiratory syndrome coronavirus [6]
  • Mus musculus [5]
  • Arabidopsis thaliana [3]
  • Escherichia coli [3]
  • Rous sarcoma virus [2]
  • Takifugu rubripes [2]
  • Helicobacter hepaticus [2]
  • Takifugu bimaculatus [1]
  • Dickeya chrysanthemi [1]
  • Saccharomyces cerevisiae [1]
  • Drosophila melanogaster [1]
  • Xenopus tropicalis [1]

EM Method

  • Single-particle [56]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [43]
  • ≥ 4Å and < 5Å [7]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 0-50 kDa [3]
  • 100-250 kDa [25]
  • 250-500 kDa [14]
  • 500-1000 kDa [4]

Release Date

  • 2025 [4]
  • 2024 [11]
  • 2023 [7]
  • 2022 [15]
  • 2021 [15]
  • 2020 [10]

Author by name

  • Fitzpatrick JAJ [58]
  • Rau MJ [41]
  • Yuan P [26]
  • Rau M [18]
  • Deng Z [17]
  • Maksaev G [17]
  • Brannigan G [12]
  • Cheng WWL [12]
  • Dietzen NM [12]
  • Petroff Ii Jt [12]
  • Summers B [11]
  • Basore K [9]
  • Mount J [8]
  • Mount JW [8]
  • Summers BT [8]
  • Zhao H [8]
  • Hu H [7]
  • Arcario MJ [6]
  • Burgie ES [6]
  • Case JB [6]
  • Chen LJ [6]
  • Dalal V [6]
  • Deitzen NM [6]
  • Deng B [6]
  • Di Cera E [6]
  • Diamond MS [6]
  • Ellebedy AH [6]
  • Errico JM [6]
  • Fremont DH [6]
  • Grigura V [6]
  • Henin J [6]
  • Joseph TT [6]
  • Liu Z [6]
  • Ma M [6]
  • Mickles AJ [6]
  • Petroff 2Nd Jt [6]
  • Ruben EA [6]
  • Santiago-mcrae E [6]
  • Schmitz AJ [6]
  • Tan BK [6]
  • Trent Moreland K [6]
  • Vierstra D [6]
  • Vierstra RD [6]
  • Washington MS [6]
  • Whelan SPJ [6]
  • Zhang J [5]
  • Chen RE [4]
  • Hurník Konečná T [4]
  • Shi PY [4]
  • Slamková D. [4]
  • Xie Z [4]
  • Haswell ES [3]
  • He Z [3]
  • Schlegel AM [3]
  • Zhao Y [3]
  • Aihara H [2]
  • Bera S [2]
  • Bitter RM [2]
  • Cashikar AG [2]
  • Chen Y [2]
  • Collier AL [2]
  • Engelman AN [2]
  • Feng J [2]
  • Grandgenett DP [2]
  • Holtzman DM [2]
  • Jiang H [2]
  • Kranz RG [2]
  • Lowder EP [2]
  • Mendez DL [2]
  • Oleru AV [2]
  • Pandey KK [2]
  • Randolph GJ [2]
  • Shi K [2]
  • Strickland MR [2]
  • Sutherland MC [2]
  • Sviben S [2]
  • Tillman DE [2]
  • Ulrich JD [2]
  • Wulf 2Nd J [2]
  • Wulf Ii J [2]
  • Zhang R [2]
  • Antony E [1]
  • Bothner B [1]
  • Chadda R [1]
  • Deveryshetty J [1]
  • Englander N [1]
  • Hervas R [1]
  • Karunakaran S [1]
  • Mattice JR [1]
  • Murzin AG [1]
  • Park Y [1]
  • Petroff JT [1]
  • Pokhrel N [1]
  • Sah R [1]
  • Scheres SHW [1]
  • Si K [1]
  • Zhang W [1]

Author by ORCID

  • Fitzpatrick JAJ [35]
  • Yuan P [26]
  • Rau MJ [17]
  • Maksaev G [17]
  • Rau M [15]
  • Cheng WWL [12]
  • Deng Z [11]
  • Mount J [8]
  • Hu H [7]
  • Arcario MJ [6]
  • Basore K [6]
  • Brannigan G [6]
  • Summers B [6]
  • Santiago-mcrae E [6]
  • Tan BK [6]
  • Trent Moreland K [6]
  • Joseph TT [6]
  • Henin J [6]
  • Mickles AJ [6]
  • Di Cera E [5]
  • Ruben EA [5]
  • Zhang J [5]
  • Zhao H [4]
  • Case JB [4]
  • Liu Z [4]
  • Errico JM [4]
  • Schmitz AJ [4]
  • Fremont DH [4]
  • Xie Z [4]
  • Schlegel AM [3]
  • Haswell ES [3]
  • He Z [3]
  • Feng J [2]
  • Aihara H [2]
  • Mendez DL [2]
  • Cashikar AG [2]
  • Strickland MR [2]
  • Pandey KK [2]
  • Kranz RG [2]
  • Tillman DE [2]
  • Sutherland MC [2]
  • Engelman AN [2]
  • Grandgenett DP [2]
  • Lowder EP [2]
  • Shi K [2]
  • Englander N [1]
  • Hervas R [1]
  • Antony E [1]
  • Sah R [1]
  • Bothner B [1]
  • Deveryshetty J [1]

Journal

  • NAT COMMUN [31]
  • BLOOD [6]
  • NAT STRUCT MOL BIOL [6]
  • CELL REP [4]
  • COMMUN BIOL [2]
  • MOL BIOL EVOL [2]
  • MOLECULAR BIOLOGY AND EVOLUTION [2]
  • NAT CHEM BIOL [2]
  • NEURON [2]
  • SCI ADV [2]
  • TO BE PUBLISHED [2]
  • METH CELL BIOL [1]
  • METHODS IN CELL BIOLOGY [1]
  • SCIENCE [1]

Software

  • CRYOSPARC [21]
  • RELION [7]
  • GCTF [3]
  • PHENIX [1]

Microscope

  • FEI TITAN KRIOS [40]
  • TFS GLACIOS [10]
  • TFS KRIOS [6]
  • FEI TITAN [1]

Electron Source

  • FIELD EMISSION GUN [57]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [27]
  • FEI FALCON IV 4K X 4K [23]
  • GATAN K2 QUANTUM 4K X 4K [5]
  • GATAN K2 BASE 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

EMPIAR Experiment type

  • FIB-SEM [4]
  • EMDB [1]

EMPIAR Image category

  • RECONSTRUCTED VOLUMES [4]
  • MICROGRAPHS - SINGLE FRAME [3]

External links

  • PDBe-Kb [52]
  • UniProt [52]
  • AlphaFold DB [48]
  • PDB [46]
  • InterPro [45]
  • Pfam [45]
  • Gene Ontology [38]
  • ChEBI [23]
  • ChEMBL [16]
  • Complex Portal [12]
  • DrugBank [7]
  • EMPIAR [3]
  • EMDB [1]
  • SCOP2 [1]