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author:"Case DA"

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Current Database

  • EMDB [6]
  • EMPIAR [1]

Current status

  • REL [7]

Sample type

  • Complex [4]
  • Ligand [2]
  • Protein [2]
  • RNA [2]
  • Virus [2]

Organism

  • Human immunodeficiency virus 1 [2]
  • Tetrahymena thermophila [2]
  • Escherichia coli [2]
  • Escherichia coli [1]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [1]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [2]

Release Date

  • 2025 [1]
  • 2024 [2]
  • 2021 [2]
  • 2018 [2]

Author by name

  • Case DA [6]
  • Chiu W [5]
  • Zhang K [5]
  • Case D [3]
  • Das R [3]
  • Kretsch RC [3]
  • Li S [3]
  • Pintilie G [3]
  • Biteen JS [2]
  • Budiardjo SJ [2]
  • Calkins AL [2]
  • Chen M [2]
  • Firlar E [2]
  • Heng X [2]
  • Ikujuni AP [2]
  • Irobalieva RN [2]
  • Kaelber JT [2]
  • Keane S [2]
  • Keane SC [2]
  • Ludtke S [2]
  • Ludtke SJ [2]
  • Marchant J [2]
  • Palo MZ [2]
  • Schmid MF [2]
  • Sciandra CA [2]
  • Slusky JSG [2]
  • Stevens JJ [2]
  • Su Z [2]
  • Summers M [2]
  • Summers MF [2]
  • Van V [2]
  • Wimalasena VK [2]
  • Palo M [1]

Author by ORCID

  • Chiu W [4]
  • Das R [2]
  • Ikujuni AP [2]
  • Kaelber JT [2]
  • Wimalasena VK [2]
  • Ludtke SJ [2]
  • Marchant J [2]
  • Van V [2]
  • Kretsch RC [2]
  • Li S [2]
  • Su Z [2]
  • Firlar E [2]
  • Zhang K [2]
  • Slusky JSG [2]
  • Schmid MF [2]
  • Chen M [2]
  • Biteen JS [2]
  • Budiardjo SJ [2]
  • Stevens JJ [2]
  • Irobalieva RN [2]
  • Summers MF [2]
  • Palo MZ [2]

Journal

  • ELIFE [2]
  • NATURE [2]
  • STRUCTURE [2]
  • BIORXIV [1]

Software

  • CRYOSPARC [4]
  • EMAN2 [2]

Microscope

  • FEI TALOS ARCTICA [2]
  • TFS KRIOS [2]
  • JEOL 2200FS [1]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN K3 6K X 4K [2]
  • DIRECT ELECTRON DE-12 4K X 3K [1]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [1]

External links

  • PDB [4]
  • AlphaFold DB [2]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • EMPIAR [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
  • EMDB [1]
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EMPIAR-11844
Related EMDB
EMD-42499 EMD-42498
Cryo-EM of Tetrahymena ribozyme
Release date: Feb. 4, 2025
Dataset size: 3.7 TB
Experiment type: EMDB

Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

bioRxiv (2025) [ DOI: 10.1101/2025.01.23.634578 ]

Image sets:
  • Extracted particles and orientations for final reconstruction of tetrahymena ribozyme.
  • Unaligned multi-frame micrographs of tetrahymena ribozyme.
EMD-42498
Download Map
3D View
Raw data
EMPIAR-11844
Tetrahymena ribozyme with water and magnesium ions
Release date: Nov. 20, 2024
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 9cbw, 9cby
Q-score: 0.5455

Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

Nature (2025) [ DOI: doi:10.1038/s41586-025-08855-w Pubmed: 40068818 ]

EMD-42499
Download Map
3D View
Raw data
EMPIAR-11844
Tetrahymena ribozyme with water and magnesium ions
Release date: Nov. 20, 2024
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9cbu, 9cbx
Q-score: 0.5565

Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

Nature (2025) [ DOI: doi:10.1038/s41586-025-08855-w Pubmed: 40068818 ]

EMD-21959
Download Map
3D View
Colicin E1 fragment in nanodisc-embedded TolC
Release date: May 12, 2021
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 6wxh
Q-score: 0.478

Budiardjo SJ, Stevens JJ, Calkins AL, Ikujuni AP, Wimalasena VK, Firlar E, Case DA, Biteen JS, Kaelber JT, Slusky JSG

eLife (2022) 11 [ DOI: doi:10.7554/eLife.73297 Pubmed: 35199644 ]

EMD-21960
Download Map
3D View
Colicin E1 fragment in nanodisc-embedded TolC
Release date: May 12, 2021
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 6wxi
Q-score: 0.471

Budiardjo SJ, Stevens JJ, Calkins AL, Ikujuni AP, Wimalasena VK, Firlar E, Case DA, Biteen JS, Kaelber JT, Slusky JSG

eLife (2022) 11 [ DOI: doi:10.7554/eLife.73297 Pubmed: 35199644 ]

EMD-7079
Download Map
3D View
Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach
Release date: Feb. 21, 2018
Resolution: 9.0 Å
EM Method: Single-particle

Zhang K, Keane SC, Su Z, Irobalieva RN, Chen M, Van V, Sciandra CA, Marchant J, Heng X, Schmid MF, Case DA, Ludtke SJ, Summers MF, Chiu W

Structure (2018) 26 pp. 490-498.e3 [ Pubmed: 29398526 DOI: doi:10.1016/j.str.2018.01.001 ]

EMD-7080
Download Map
3D View
Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach
Release date: Feb. 21, 2018
Resolution: 9.3 Å
EM Method: Single-particle

Zhang K, Keane SC, Su Z, Irobalieva RN, Chen M, Van V, Sciandra CA, Marchant J, Heng X, Schmid MF, Case DA, Ludtke SJ, Summers MF, Chiu W

Structure (2018) 26 pp. 490-498.e3 [ Pubmed: 29398526 DOI: doi:10.1016/j.str.2018.01.001 ]

Sort by: Download
Showing 1 - 7 of 7. Page 1 of 1
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [6]
  • EMPIAR [1]

Current status

  • REL [7]

Sample type

  • Complex [4]
  • Ligand [2]
  • Protein [2]
  • RNA [2]
  • Virus [2]

Organism

  • Human immunodeficiency virus 1 [2]
  • Tetrahymena thermophila [2]
  • Escherichia coli [2]
  • Escherichia coli [1]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [1]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [2]

Release Date

  • 2025 [1]
  • 2024 [2]
  • 2021 [2]
  • 2018 [2]

Author by name

  • Case DA [6]
  • Chiu W [5]
  • Zhang K [5]
  • Case D [3]
  • Das R [3]
  • Kretsch RC [3]
  • Li S [3]
  • Pintilie G [3]
  • Biteen JS [2]
  • Budiardjo SJ [2]
  • Calkins AL [2]
  • Chen M [2]
  • Firlar E [2]
  • Heng X [2]
  • Ikujuni AP [2]
  • Irobalieva RN [2]
  • Kaelber JT [2]
  • Keane S [2]
  • Keane SC [2]
  • Ludtke S [2]
  • Ludtke SJ [2]
  • Marchant J [2]
  • Palo MZ [2]
  • Schmid MF [2]
  • Sciandra CA [2]
  • Slusky JSG [2]
  • Stevens JJ [2]
  • Su Z [2]
  • Summers M [2]
  • Summers MF [2]
  • Van V [2]
  • Wimalasena VK [2]
  • Palo M [1]

Author by ORCID

  • Chiu W [4]
  • Das R [2]
  • Ikujuni AP [2]
  • Kaelber JT [2]
  • Wimalasena VK [2]
  • Ludtke SJ [2]
  • Marchant J [2]
  • Van V [2]
  • Kretsch RC [2]
  • Li S [2]
  • Su Z [2]
  • Firlar E [2]
  • Zhang K [2]
  • Slusky JSG [2]
  • Schmid MF [2]
  • Chen M [2]
  • Biteen JS [2]
  • Budiardjo SJ [2]
  • Stevens JJ [2]
  • Irobalieva RN [2]
  • Summers MF [2]
  • Palo MZ [2]

Journal

  • ELIFE [2]
  • NATURE [2]
  • STRUCTURE [2]
  • BIORXIV [1]

Software

  • CRYOSPARC [4]
  • EMAN2 [2]

Microscope

  • FEI TALOS ARCTICA [2]
  • TFS KRIOS [2]
  • JEOL 2200FS [1]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN K3 6K X 4K [2]
  • DIRECT ELECTRON DE-12 4K X 3K [1]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [1]

External links

  • PDB [4]
  • AlphaFold DB [2]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • EMPIAR [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
  • EMDB [1]