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author:"Briggs JA"

Filter By

Current Database

  • EMDB [71]
  • EMPIAR [2]

Current status

  • REL [73]

Sample type

  • Protein [48]
  • Virus [38]
  • Sample [16]
  • Cellular component [10]
  • Complex [10]
  • Cell [2]
  • DNA [1]

Organism

  • Human immunodeficiency virus 1 [28]
  • Saccharomyces cerevisiae [14]
  • Chlamydomonas reinhardtii [12]
  • Mus musculus [5]
  • Zaire ebolavirus [4]
  • Mason-pfizer monkey virus [2]
  • Pseudomonas virus phi8 [2]
  • Marburg marburgvirus [2]
  • Homo sapiens [2]
  • Rattus norvegicus [1]
  • Human immunodeficiency virus 1 [1]
  • Simian immunodeficiency virus [1]
  • Human immunodeficiency virus [1]
  • Agrobacterium fabrum [1]
  • Zaire ebolavirus [1]
  • Saccharomyces cerevisiae [1]

EM Method

  • Subtomogram averaging [54]
  • Tomography [7]
  • Single-particle [6]
  • Helical reconstruction [4]

Resolution

  • ≥ 3Å and < 4Å [1]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [29]
  • ≥ 12Å and < 16Å [5]
  • ≥ 16Å and < 20Å [4]
  • ≥ 20Å and < 30Å [13]
  • ≥ 30Å [7]

Model molecular weight

  • 0-50 kDa [2]
  • 50-100 kDa [1]
  • 100-250 kDa [19]
  • 250-500 kDa [4]
  • 500-1000 kDa [7]
  • 1-2 MDa [2]
  • 2-5 MDa [1]

Release Date

  • 2024 [3]
  • 2020 [6]
  • 2018 [1]
  • 2017 [16]
  • 2016 [31]
  • 2015 [2]
  • 2014 [1]
  • 2013 [6]
  • 2012 [3]
  • 2007 [2]
  • 2006 [2]

Author by name

  • Briggs JA [72]
  • Hagen WJ [41]
  • Briggs JAG [38]
  • Krausslich HG [29]
  • Glass B [22]
  • Mattei S [21]
  • Wan W [19]
  • Dodonova SO [17]
  • Sachse C [13]
  • Bykov YS [12]
  • Engel BD [12]
  • Plitzko JM [12]
  • Jakobi AJ [11]
  • Albert S [10]
  • Baumeister W [10]
  • Obr M [10]
  • Schaffer M [10]
  • Hagen WJH [8]
  • Schur FK [8]
  • Becker S [7]
  • Kirkpatrick JM [7]
  • Kolesnikova L [7]
  • Prinz S [7]
  • Schur FKM [7]
  • Bornholdt ZA [6]
  • Clarke M [6]
  • Koehler A [6]
  • Kraeusslich H-G [6]
  • Norris M [6]
  • Norris MJ [6]
  • Ollman-saphire E [6]
  • Saphire EO [6]
  • Zanetti G [6]
  • Aderhold P [5]
  • Arjen JJ [5]
  • Bacia K [5]
  • Bharat TA [5]
  • Bharat TAM [5]
  • Daum S [5]
  • Ganeva I [5]
  • Kopp J [5]
  • Kosinski J [5]
  • Meister A [5]
  • Rohling S [5]
  • Schekman R [5]
  • Sinning I [5]
  • Wieland F [5]
  • Fuller SD [4]
  • Kaksonen M [4]
  • Beck M [3]
  • Bui KH [3]
  • Chakraborty S [3]
  • Diguilio AL [3]
  • Glavy JS [3]
  • Heebner J [3]
  • Hurt E [3]
  • Kelley R [3]
  • Khavnekar S [3]
  • Kotecha A [3]
  • Mosalaganti S [3]
  • Riches JD [3]
  • Tagiltsev G [3]
  • Teimer R [3]
  • Waltz F [3]
  • Wietrzynski W [3]
  • Zhang X [3]
  • Von Appen A [3]
  • Abella M [2]
  • Bertipaglia C [2]
  • Butcher SJ [2]
  • Davey NE [2]
  • Desfosses A [2]
  • Gieras A [2]
  • Grunewald K [2]
  • Harar P [2]
  • Huiskonen JT [2]
  • Jaalinoja HT [2]
  • Kukulski W [2]
  • Lamm L [2]
  • Mccafferty CL [2]
  • Meijers R [2]
  • Michael AK [2]
  • Picco A [2]
  • Ravichandran AC [2]
  • Righetto RD [2]
  • Ruml T [2]
  • Rumlova M [2]
  • Rybin V [2]
  • Schneider S [2]
  • Schulz J [2]
  • Skruzny M [2]
  • Tarafder AK [2]
  • Uetrecht C [2]
  • Ulbrich P [2]
  • Van Der Stappen P [2]
  • Wilmanns M [2]
  • Zufferey S [2]
  • De Marco A [2]
  • Van Dorst S [2]
  • Van Den Hoek H [2]

Author by ORCID

  • Briggs JA [67]
  • Hagen WJ [40]
  • Krausslich HG [27]
  • Mattei S [21]
  • Dodonova SO [17]
  • Wan W [15]
  • Bykov YS [12]
  • Schaffer M [10]
  • Engel BD [10]
  • Sachse C [10]
  • Plitzko JM [10]
  • Jakobi AJ [10]
  • Schur FK [7]
  • Ollman-saphire E [6]
  • Bornholdt ZA [6]
  • Norris MJ [6]
  • Clarke M [6]
  • Zanetti G [6]
  • Kopp J [5]
  • Schekman R [5]
  • Bharat TA [5]
  • Kosinski J [5]
  • Von Appen A [3]
  • Riches JD [3]
  • Mosalaganti S [3]
  • Beck M [3]
  • Bui KH [3]
  • Glavy JS [3]
  • Davey NE [2]
  • Butcher SJ [2]
  • Schneider S [2]
  • Huiskonen JT [2]
  • Tarafder AK [2]
  • Uetrecht C [2]
  • Kukulski W [2]
  • Kaksonen M [2]
  • Grunewald K [2]
  • Gieras A [2]
  • Rumlova M [2]
  • Ruml T [2]
  • Desfosses A [2]
  • Ulbrich P [2]
  • Wilmanns M [2]
  • Picco A [2]
  • Meijers R [2]
  • Briggs JA [2]
  • Kaksonen M [2]
  • Sachse C [2]
  • Skruzny M [2]
  • Lux V [1]
  • Barak Y [1]
  • Wolf SG [1]
  • Forster F [1]
  • Krauesslich HG [1]
  • Schorb M [1]

Journal

  • SCIENCE [31]
  • ELIFE [26]
  • BIORXIV [3]
  • J STRUCT BIOL [3]
  • DEV CELL [2]
  • EMBO REP [2]
  • NATURE [2]
  • PNAS [2]
  • STRUCTURE [2]
  • PLOS PATHOG [1]

Software

  • AV3 [43]
  • TOM TOOLBOX [28]
  • CTFFIND [22]
  • CTFPHASEFLIP [21]
  • TOM [16]
  • IMOD [6]
  • AMIRA [5]
  • CHIMERA [3]
  • RELION [3]
  • SPIDER, AV3 [3]
  • TOM/AV3, MATLAB [3]
  • EMAN [2]
  • IMAGIC5 [2]
  • SPRING [2]
  • STOPGAP [2]
  • BSOFT, EMAN, XMIPP, SPIDER, IHRSR [1]
  • CHIMERA, MDFF [1]
  • COLORES [1]
  • FITPDB2EM [1]
  • I-TASSER, CHIMERA, DIREX [1]
  • IMOD, RAPTOR [1]
  • IMOD,AV3,MATLAB [1]
  • PYTOM [1]
  • SPIDER [1]
  • TOM/AV3, MATLAB, DYNAMO [1]
  • UCSF CHIMERA [1]
  • URO [1]
  • WARP [1]

Microscope

  • FEI TITAN KRIOS [62]
  • FEI TECNAI F20 [3]
  • TFS KRIOS [2]
  • FEI POLARA 300 [1]
  • FEI/PHILIPS CM12 [1]
  • FEI/PHILIPS CM300FEG/ST [1]
  • FEI/PHILIPS CM300FEG/T [1]

Electron Source

  • FIELD EMISSION GUN [70]
  • LAB6 [1]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [41]
  • GATAN K2 SUMMIT 4K X 4K [10]
  • GATAN MULTISCAN [5]
  • KODAK SO-163 FILM [5]
  • GATAN ULTRASCAN 4000 4K X 4K [2]
  • GENERIC GATAN [2]
  • TFS FALCON 4I 4K X 4K [2]
  • FEI FALCON II 4K X 4K [1]
  • GENERIC TVIPS [1]
  • TVIPS TEMCAM-F415 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]
  • RECONSTRUCTED VOLUMES [1]
  • TILT SERIES [1]

External links

  • UniProt [43]
  • PDB [36]
  • PDBe-Kb [20]
  • InterPro [14]
  • AlphaFold DB [11]
  • Pfam [10]
  • Gene Ontology [7]
  • EMDB [2]
  • EMPIAR [1]
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EMD-51731
Download Map
3D View
In situ PSII subtomogram average from Chlamydomonas reinhardtii
Release date: Nov. 6, 2024
Resolution: 18.8 Å
EM Method: Subtomogram averaging

Kelley R, Khavnekar S, Righetto RD, Heebner J, Obr M, Zhang X, Chakraborty S, Tagiltsev G, Michael AK, van Dorst S, Waltz F, McCafferty CL, Lamm L, Zufferey S, Van der Stappen P, van den Hoek H, Wietrzynski W, Harar P, Wan W, Briggs JA, Plitzko JM, Engel BD, Kotecha A

bioRxiv (2024) [ DOI: doi:10.1101/2024.12.28.630444 ]

EMPIAR-11830
Related EMDB
EMD-18306
In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling
Release date: April 9, 2024
Dataset size: 32.1 TB
Experiment type: EMDB

Kelley R, Khavnekar S, Righetto RD, Heebner J, Obr M, Zhang X, Chakraborty S, Tagiltsev G, Michael AK, van Dorst S, Waltz F, McCafferty CL, Lamm L, Zufferey S, Van der Stappen P, van den Hoek H, Wietrzynski W, Harar P, Wan W, Briggs JA, Plitzko JM, Engel BD, Kotecha A

bioRxiv (2024) [ DOI: 10.1101/2024.12.28.630444 ]

Image sets:
  • Chlamy Visual proteomics project containing 1829 tilt series and preprocessed metadata for C. reinhardtii prepared using cryo-plasmaFIB milling
  • Chlamy Visual proteomics denoised tomograms
  • Chlamy Visual proteomics 3D CTF-corrected tomograms
EMD-19906
Download Map
3D View
In situ nucleosome subtomogram average from Chlamydomonas reinhardtii
Release date: April 3, 2024
Resolution: 9.65 Å
EM Method: Subtomogram averaging

Kelley R, Khavnekar S, Righetto RD, Heebner J, Obr M, Zhang X, Chakraborty S, Tagiltsev G, Michael AK, van Dorst S, Waltz F, McCafferty CL, Lamm L, Zufferey S, Van der Stappen P, van den Hoek H, Wietrzynski W, Harar P, Wan W, Briggs JA, Plitzko JM, Engel BD, Kotecha A

bioRxiv (2024) [ DOI: doi:10.1101/2024.12.28.630444 ]

EMD-11660
Download Map
3D View
Structure of VP40 matrix layer in EBOV NP-VP24-VP35-VP40 VLPs
Release date: Oct. 14, 2020
Resolution: 10.2 Å
EM Method: Subtomogram averaging

Wan W, Clarke M, Norris MJ, Kolesnikova L, Koehler A, Bornholdt ZA, Becker S, Ollman-Saphire E, Briggs JA

eLife (2020) 9 [ Pubmed: 33016878 DOI: doi:10.7554/eLife.59225 ]

EMD-11661
Download Map
3D View
Structure of VP40 matrix layer in EBOV VP40 VLPs
Release date: Oct. 14, 2020
Resolution: 9.8 Å
EM Method: Subtomogram averaging

Wan W, Clarke M, Norris MJ, Kolesnikova L, Koehler A, Bornholdt ZA, Becker S, Ollman-Saphire E, Briggs JA

eLife (2020) 9 [ Pubmed: 33016878 DOI: doi:10.7554/eLife.59225 ]

EMD-11662
Download Map
3D View
Structure of VP40 matrix layer in EBOV VP40-GP VLPs
Release date: Oct. 14, 2020
Resolution: 9.9 Å
EM Method: Subtomogram averaging

Wan W, Clarke M, Norris MJ, Kolesnikova L, Koehler A, Bornholdt ZA, Becker S, Ollman-Saphire E, Briggs JA

eLife (2020) 9 [ Pubmed: 33016878 DOI: doi:10.7554/eLife.59225 ]

EMD-11663
Download Map
3D View
Structure of VP40 matrix layer in intact MARV virions
Release date: Oct. 14, 2020
Resolution: 9.6 Å
EM Method: Subtomogram averaging

Wan W, Clarke M, Norris MJ, Kolesnikova L, Koehler A, Bornholdt ZA, Becker S, Ollman-Saphire E, Briggs JA

eLife (2020) 9 [ Pubmed: 33016878 DOI: doi:10.7554/eLife.59225 ]

EMD-11664
Download Map
3D View
Structure of VP40 matrix layer in MARV VP40 VLPs
Release date: Oct. 14, 2020
Resolution: 10.8 Å
EM Method: Subtomogram averaging

Wan W, Clarke M, Norris MJ, Kolesnikova L, Koehler A, Bornholdt ZA, Becker S, Ollman-Saphire E, Briggs JA

eLife (2020) 9 [ Pubmed: 33016878 DOI: doi:10.7554/eLife.59225 ]

EMD-11665
Download Map
3D View
Structure of GP in EBOV VP40-GP VLPs
Release date: Oct. 14, 2020
Resolution: 12.8 Å
EM Method: Subtomogram averaging

Wan W, Clarke M, Norris MJ, Kolesnikova L, Koehler A, Bornholdt ZA, Becker S, Ollman-Saphire E, Briggs JA

eLife (2020) 9 [ Pubmed: 33016878 DOI: doi:10.7554/eLife.59225 ]

EMPIAR-10164
Related EMDB
EMD-3782 EMD-4015
Cryo-electron tomography of immature HIV-1 dMACANC VLPs
Release date: March 21, 2018
Dataset size: 865.0 GB
Experiment type: EMDB

Schur FK, Obr M, Hagen WJ, Wan W, Jakobi AJ, Kirkpatrick JM, Sachse C, Kräusslich HG, Briggs JA

Science (2016) 353 pp. 506-508 [ DOI: 10.1126/science.aaf9620 Pubmed: 27417497 ]

Image sets:
  • Compressed, unaligned, multi-frame micrographs of tilt series containing HIV-1 dMACANC virus like particles assembled in the presence of BVM.
Sort by: Download
Showing 1 - 10 of 73. Page 1 of 8
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Filter By

Current Database

  • EMDB [71]
  • EMPIAR [2]

Current status

  • REL [73]

Sample type

  • Protein [48]
  • Virus [38]
  • Sample [16]
  • Cellular component [10]
  • Complex [10]
  • Cell [2]
  • DNA [1]

Organism

  • Human immunodeficiency virus 1 [28]
  • Saccharomyces cerevisiae [14]
  • Chlamydomonas reinhardtii [12]
  • Mus musculus [5]
  • Zaire ebolavirus [4]
  • Mason-pfizer monkey virus [2]
  • Pseudomonas virus phi8 [2]
  • Marburg marburgvirus [2]
  • Homo sapiens [2]
  • Rattus norvegicus [1]
  • Human immunodeficiency virus 1 [1]
  • Simian immunodeficiency virus [1]
  • Human immunodeficiency virus [1]
  • Agrobacterium fabrum [1]
  • Zaire ebolavirus [1]
  • Saccharomyces cerevisiae [1]

EM Method

  • Subtomogram averaging [54]
  • Tomography [7]
  • Single-particle [6]
  • Helical reconstruction [4]

Resolution

  • ≥ 3Å and < 4Å [1]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [29]
  • ≥ 12Å and < 16Å [5]
  • ≥ 16Å and < 20Å [4]
  • ≥ 20Å and < 30Å [13]
  • ≥ 30Å [7]

Model molecular weight

  • 0-50 kDa [2]
  • 50-100 kDa [1]
  • 100-250 kDa [19]
  • 250-500 kDa [4]
  • 500-1000 kDa [7]
  • 1-2 MDa [2]
  • 2-5 MDa [1]

Release Date

  • 2024 [3]
  • 2020 [6]
  • 2018 [1]
  • 2017 [16]
  • 2016 [31]
  • 2015 [2]
  • 2014 [1]
  • 2013 [6]
  • 2012 [3]
  • 2007 [2]
  • 2006 [2]

Author by name

  • Briggs JA [72]
  • Hagen WJ [41]
  • Briggs JAG [38]
  • Krausslich HG [29]
  • Glass B [22]
  • Mattei S [21]
  • Wan W [19]
  • Dodonova SO [17]
  • Sachse C [13]
  • Bykov YS [12]
  • Engel BD [12]
  • Plitzko JM [12]
  • Jakobi AJ [11]
  • Albert S [10]
  • Baumeister W [10]
  • Obr M [10]
  • Schaffer M [10]
  • Hagen WJH [8]
  • Schur FK [8]
  • Becker S [7]
  • Kirkpatrick JM [7]
  • Kolesnikova L [7]
  • Prinz S [7]
  • Schur FKM [7]
  • Bornholdt ZA [6]
  • Clarke M [6]
  • Koehler A [6]
  • Kraeusslich H-G [6]
  • Norris M [6]
  • Norris MJ [6]
  • Ollman-saphire E [6]
  • Saphire EO [6]
  • Zanetti G [6]
  • Aderhold P [5]
  • Arjen JJ [5]
  • Bacia K [5]
  • Bharat TA [5]
  • Bharat TAM [5]
  • Daum S [5]
  • Ganeva I [5]
  • Kopp J [5]
  • Kosinski J [5]
  • Meister A [5]
  • Rohling S [5]
  • Schekman R [5]
  • Sinning I [5]
  • Wieland F [5]
  • Fuller SD [4]
  • Kaksonen M [4]
  • Beck M [3]
  • Bui KH [3]
  • Chakraborty S [3]
  • Diguilio AL [3]
  • Glavy JS [3]
  • Heebner J [3]
  • Hurt E [3]
  • Kelley R [3]
  • Khavnekar S [3]
  • Kotecha A [3]
  • Mosalaganti S [3]
  • Riches JD [3]
  • Tagiltsev G [3]
  • Teimer R [3]
  • Waltz F [3]
  • Wietrzynski W [3]
  • Zhang X [3]
  • Von Appen A [3]
  • Abella M [2]
  • Bertipaglia C [2]
  • Butcher SJ [2]
  • Davey NE [2]
  • Desfosses A [2]
  • Gieras A [2]
  • Grunewald K [2]
  • Harar P [2]
  • Huiskonen JT [2]
  • Jaalinoja HT [2]
  • Kukulski W [2]
  • Lamm L [2]
  • Mccafferty CL [2]
  • Meijers R [2]
  • Michael AK [2]
  • Picco A [2]
  • Ravichandran AC [2]
  • Righetto RD [2]
  • Ruml T [2]
  • Rumlova M [2]
  • Rybin V [2]
  • Schneider S [2]
  • Schulz J [2]
  • Skruzny M [2]
  • Tarafder AK [2]
  • Uetrecht C [2]
  • Ulbrich P [2]
  • Van Der Stappen P [2]
  • Wilmanns M [2]
  • Zufferey S [2]
  • De Marco A [2]
  • Van Dorst S [2]
  • Van Den Hoek H [2]

Author by ORCID

  • Briggs JA [67]
  • Hagen WJ [40]
  • Krausslich HG [27]
  • Mattei S [21]
  • Dodonova SO [17]
  • Wan W [15]
  • Bykov YS [12]
  • Schaffer M [10]
  • Engel BD [10]
  • Sachse C [10]
  • Plitzko JM [10]
  • Jakobi AJ [10]
  • Schur FK [7]
  • Ollman-saphire E [6]
  • Bornholdt ZA [6]
  • Norris MJ [6]
  • Clarke M [6]
  • Zanetti G [6]
  • Kopp J [5]
  • Schekman R [5]
  • Bharat TA [5]
  • Kosinski J [5]
  • Von Appen A [3]
  • Riches JD [3]
  • Mosalaganti S [3]
  • Beck M [3]
  • Bui KH [3]
  • Glavy JS [3]
  • Davey NE [2]
  • Butcher SJ [2]
  • Schneider S [2]
  • Huiskonen JT [2]
  • Tarafder AK [2]
  • Uetrecht C [2]
  • Kukulski W [2]
  • Kaksonen M [2]
  • Grunewald K [2]
  • Gieras A [2]
  • Rumlova M [2]
  • Ruml T [2]
  • Desfosses A [2]
  • Ulbrich P [2]
  • Wilmanns M [2]
  • Picco A [2]
  • Meijers R [2]
  • Briggs JA [2]
  • Kaksonen M [2]
  • Sachse C [2]
  • Skruzny M [2]
  • Lux V [1]
  • Barak Y [1]
  • Wolf SG [1]
  • Forster F [1]
  • Krauesslich HG [1]
  • Schorb M [1]

Journal

  • SCIENCE [31]
  • ELIFE [26]
  • BIORXIV [3]
  • J STRUCT BIOL [3]
  • DEV CELL [2]
  • EMBO REP [2]
  • NATURE [2]
  • PNAS [2]
  • STRUCTURE [2]
  • PLOS PATHOG [1]

Software

  • AV3 [43]
  • TOM TOOLBOX [28]
  • CTFFIND [22]
  • CTFPHASEFLIP [21]
  • TOM [16]
  • IMOD [6]
  • AMIRA [5]
  • CHIMERA [3]
  • RELION [3]
  • SPIDER, AV3 [3]
  • TOM/AV3, MATLAB [3]
  • EMAN [2]
  • IMAGIC5 [2]
  • SPRING [2]
  • STOPGAP [2]
  • BSOFT, EMAN, XMIPP, SPIDER, IHRSR [1]
  • CHIMERA, MDFF [1]
  • COLORES [1]
  • FITPDB2EM [1]
  • I-TASSER, CHIMERA, DIREX [1]
  • IMOD, RAPTOR [1]
  • IMOD,AV3,MATLAB [1]
  • PYTOM [1]
  • SPIDER [1]
  • TOM/AV3, MATLAB, DYNAMO [1]
  • UCSF CHIMERA [1]
  • URO [1]
  • WARP [1]

Microscope

  • FEI TITAN KRIOS [62]
  • FEI TECNAI F20 [3]
  • TFS KRIOS [2]
  • FEI POLARA 300 [1]
  • FEI/PHILIPS CM12 [1]
  • FEI/PHILIPS CM300FEG/ST [1]
  • FEI/PHILIPS CM300FEG/T [1]

Electron Source

  • FIELD EMISSION GUN [70]
  • LAB6 [1]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [41]
  • GATAN K2 SUMMIT 4K X 4K [10]
  • GATAN MULTISCAN [5]
  • KODAK SO-163 FILM [5]
  • GATAN ULTRASCAN 4000 4K X 4K [2]
  • GENERIC GATAN [2]
  • TFS FALCON 4I 4K X 4K [2]
  • FEI FALCON II 4K X 4K [1]
  • GENERIC TVIPS [1]
  • TVIPS TEMCAM-F415 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]
  • RECONSTRUCTED VOLUMES [1]
  • TILT SERIES [1]

External links

  • UniProt [43]
  • PDB [36]
  • PDBe-Kb [20]
  • InterPro [14]
  • AlphaFold DB [11]
  • Pfam [10]
  • Gene Ontology [7]
  • EMDB [2]
  • EMPIAR [1]