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author:"Banerjee S"

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Current Database

  • EMDB [26]
  • EMPIAR [6]

Current status

  • REL [32]

Sample type

  • Protein [26]
  • Ligand [18]
  • Complex [13]
  • Sample [13]

Organism

  • Homo sapiens [12]
  • Bos taurus [7]
  • Mycobacterium tuberculosis [3]
  • Escherichia coli [3]
  • Spodoptera aff. frugiperda 1 bold-2017 [1]
  • Gallus gallus [1]

EM Method

  • Single-particle [22]
  • Helical reconstruction [4]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [9]
  • ≥ 3Å and < 4Å [15]

Model molecular weight

  • 50-100 kDa [5]
  • 100-250 kDa [2]
  • 250-500 kDa [11]
  • 500-1000 kDa [8]

Release Date

  • 2025 [5]
  • 2024 [3]
  • 2023 [1]
  • 2022 [3]
  • 2019 [1]
  • 2018 [1]
  • 2016 [16]
  • 2015 [1]
  • 2014 [1]

Author by name

  • Banerjee S [30]
  • Subramaniam S [21]
  • Merk A [20]
  • Bartesaghi A [19]
  • Falconieri V [16]
  • Rao P [15]
  • Milne JL [12]
  • Milne JLS [12]
  • Earl LA [11]
  • Matthies D [9]
  • Schmidt M [8]
  • Borgnia MJ [6]
  • Pfeiffer PB [6]
  • Pierson J [6]
  • Arkin M [5]
  • Bulfer SL [5]
  • Deshaies RJ [5]
  • Green N [5]
  • Huryn D [5]
  • Mroczkowski B [5]
  • Neitz RJ [5]
  • Wiese S [5]
  • Wipf P [5]
  • Yan Y [5]
  • Baur J [4]
  • Boxer MB [4]
  • Davis MI [4]
  • Faendrich M [4]
  • Fandrich M [4]
  • Fändrich M [4]
  • Haupt C [4]
  • Kuhn L [4]
  • Pragani R [4]
  • Aneja S [3]
  • Biswal B [3]
  • Biswal BK [3]
  • Goyal S [3]
  • Kar D [3]
  • Karimi-farsijani S [3]
  • Kumar V [3]
  • Kumari S [3]
  • Pal RK [3]
  • Raina R [3]
  • Singla M [3]
  • Tiwari S [3]
  • Vinothkumar KR [3]
  • Wu X [3]
  • Amann KU [2]
  • Bijzet J [2]
  • Daniel C [2]
  • Hazenberg BPC [2]
  • Hegenbart U [2]
  • Hitzenberger M [2]
  • Karandur D [2]
  • Kondo Y [2]
  • Kulhanek K [2]
  • Kupfer N [2]
  • Kuriyan J [2]
  • Ognjenovic J [2]
  • Roose JP [2]
  • Schonland SO [2]
  • Sharma K [2]
  • Westermark GT [2]
  • Wong K [2]
  • Zacharias M [2]
  • Aguerrebere C [1]
  • Girdhar A [1]
  • Grigorieff N [1]
  • Guo L [1]
  • Lee C [1]
  • Milne J [1]
  • Rajes C [1]
  • Sapiro G [1]
  • Savran D [1]
  • Schwierz N [1]
  • Shorter J [1]
  • Zhu X [1]

Author by ORCID

  • Subramaniam S [19]
  • Matthies D [8]
  • Borgnia MJ [6]
  • Huryn D [5]
  • Deshaies RJ [5]
  • Arkin M [5]
  • Davis MI [4]
  • Banerjee S [4]
  • Wiese S [3]
  • Biswal B [3]
  • Raina R [3]
  • Schmidt M [3]
  • Kumari S [3]
  • Fandrich M [3]
  • Kar D [3]
  • Kumar V [3]
  • Schonland SO [2]
  • Hegenbart U [2]
  • Kupfer N [2]
  • Pfeiffer PB [2]
  • Zacharias M [1]
  • Kulhanek K [1]
  • Ognjenovic J [1]
  • Grigorieff N [1]
  • Kuriyan J [1]
  • Daniel C [1]
  • Karandur D [1]
  • Westermark GT [1]
  • Hazenberg BPC [1]
  • Kondo Y [1]
  • Sharma K [1]
  • Schwierz N [1]
  • Roose JP [1]
  • Zhu X [1]

Journal

  • SCIENCE [9]
  • MOL PHARMACOL [6]
  • CELL [4]
  • NAT COMMUN [4]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [3]
  • J MOL BIOL [2]
  • PNAS [1]
  • STRUCTURE [1]

Software

  • FREALIGN [11]
  • CHIMERA, ROSETTA, PHENIX, COOT [6]
  • CTFFIND3, EMAN2, RELION [6]
  • RELION [6]
  • CTFFIND [3]
  • FREALIGN, EMAN2 [1]

Microscope

  • FEI TITAN KRIOS [23]
  • TFS KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [26]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [14]
  • GATAN K2 QUANTUM 4K X 4K [6]
  • FEI FALCON III 4K X 4K [3]
  • GATAN K2 4K X 4K [2]
  • FEI FALCON IV 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [6]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [6]
  • MICROGRAPHS - SINGLE FRAME [1]

External links

  • PDB [26]
  • AlphaFold DB [25]
  • UniProt [25]
  • Gene Ontology [24]
  • PDBe-Kb [24]
  • InterPro [17]
  • Pfam [11]
  • ChEBI [8]
  • ChEMBL [8]
  • DrugBank [8]
  • EMPIAR [7]
  • EMDB [6]
  • CATH [4]
  • Complex Portal [3]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 32. Page 1 of 4
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EMD-63588
Download Map
3D View
Imidazole glycerol phosphate dehydratase from Mycobacterium tuberculosis, apo structure
Release date: June 18, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9m2p
Q-score: 0.582

Raina R, Kar D, Singla M, Tiwari S, Kumari S, Aneja S, Kumar V, Banerjee S, Goyal S, Pal RK, Vinothkumar KR, Biswal B

Acta Crystallogr F Struct Biol Commun (2025) 81 pp. 297-305 [ Pubmed: 40478632 DOI: doi:10.1107/S2053230X25004595 ]

EMD-63589
Download Map
3D View
Imidazole glycerol phosphate dehydratase from Mycobacterium tuberculosis, in complex with aminotriazole
Release date: June 18, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9m2q
Q-score: 0.616

Raina R, Kar D, Singla M, Tiwari S, Kumari S, Aneja S, Kumar V, Banerjee S, Goyal S, Pal RK, Vinothkumar KR, Biswal B

Acta Crystallogr F Struct Biol Commun (2025) 81 pp. 297-305 [ Pubmed: 40478632 DOI: doi:10.1107/S2053230X25004595 ]

EMD-63590
Download Map
3D View
Imidazole glycerol phosphate dehydratase from Mycobacterium tuberculosis, apo structure
Release date: June 18, 2025
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9m2r
Q-score: 0.708

Raina R, Kar D, Singla M, Tiwari S, Kumari S, Aneja S, Kumar V, Banerjee S, Goyal S, Pal RK, Vinothkumar KR, Biswal B

Acta Crystallogr F Struct Biol Commun (2025) 81 pp. 297-305 [ Pubmed: 40478632 DOI: doi:10.1107/S2053230X25004595 ]

EMPIAR-12447
Related EMDB
EMD-14739
Cryo-EM Structure of the Full-length hnRNPA1 Amyloid Fibril
Release date: June 2, 2025
Dataset size: 928.0 GB
Experiment type: EMDB

Sharma K, Banerjee S, Savran D, Rajes C, Wiese S, Girdhar A, Schwierz N, Lee C, Shorter J, Schmidt M, Guo L, Fändrich M

J Mol Biol (2023) 435 [ Pubmed: 37481159 DOI: 10.1016/j.jmb.2023.168211 ]

Image sets:
  • Unaligned multiframe micrographs of full-length hnRNPA1 amyloid fibrils
EMPIAR-11802
Related EMDB
EMD-18881
AL amyloid fibril from the FOR010 light chain
Release date: Feb. 21, 2025
Dataset size: 1.8 TB
Experiment type: EMDB

Karimi-Farsijani S, Pfeiffer PB, Banerjee S, Baur J, Kuhn L, Kupfer N, Hegenbart U, Schönland SO, Wiese S, Haupt C, Schmidt M, Fändrich M

To Be Published

Image sets:
  • Unaligned multi-frame micrographs of FOR010 amyloid fibrils
EMPIAR-11801
Related EMDB
EMD-19818
AL amyloid fibril from the FOR103 light chain
Release date: Sept. 3, 2024
Dataset size: 504.3 GB
Experiment type: EMDB

Karimi-Farsijani S, Pfeiffer PB, Banerjee S, Baur J, Kuhn L, Kupfer N, Hegenbart U, Schönland SO, Wiese S, Haupt C, Schmidt M, Fändrich M

To Be Published

Image sets:
  • Unaligned multi-frame micrographs of FOR103 amyloid fibrils
EMD-18881
Download Map
3D View
Raw data
EMPIAR-11802
AL amyloid fibril from the FOR010 light chain
Release date: June 26, 2024
Resolution: 2.25 Å
EM Method: Helical reconstruction
Fitted PDBs: 8r47
Q-score: 0.651

Karimi-Farsijani S, Pfeiffer PB, Banerjee S, Baur J, Kuhn L, Kupfer N, Hegenbart U, Schonland SO, Wiese S, Haupt C, Schmidt M, Fandrich M

Nat Commun (2024) 15 pp. 5121-5121 [ Pubmed: 38879609 DOI: doi:10.1038/s41467-024-49520-6 ]

EMD-19818
Download Map
3D View
Raw data
EMPIAR-11801
AL amyloid fibril from the FOR103 light chain
Release date: June 26, 2024
Resolution: 2.92 Å
EM Method: Helical reconstruction
Fitted PDBs: 9eme
Q-score: 0.562

Karimi-Farsijani S, Pfeiffer PB, Banerjee S, Baur J, Kuhn L, Kupfer N, Hegenbart U, Schonland SO, Wiese S, Haupt C, Schmidt M, Fandrich M

Nat Commun (2024) 15 pp. 5121-5121 [ Pubmed: 38879609 DOI: doi:10.1038/s41467-024-49520-6 ]

EMD-14739
Download Map
3D View
Raw data
EMPIAR-12447
Amyloid fibril in vitro from full-length hnRNPA1 protein
Release date: Aug. 2, 2023
Resolution: 3.32 Å
EM Method: Helical reconstruction
Fitted PDBs: 7zj2
Q-score: 0.491

Sharma K, Banerjee S, Savran D, Rajes C, Wiese S, Girdhar A, Schwierz N, Lee C, Shorter J, Schmidt M, Guo L, Fandrich M

J Mol Biol (2023) 435 pp. 168211-168211 [ DOI: doi:10.1016/j.jmb.2023.168211 Pubmed: 37481159 ]

EMPIAR-11342
Related EMDB
EMD-14771
Amyloid fibril structure from the vascular variant of systemic AA amyloidosis
Release date: Dec. 16, 2022
Dataset size: 1009.8 GB
Experiment type: EMDB

Banerjee S, Baur J, Daniel C, Pfeiffer PB, Hitzenberger M, Kuhn L, Wiese S, Bijzet J, Haupt C, Amann KU, Zacharias M, Hazenberg BPC, Westermark GT, Schmidt M, Fändrich M

Nat Commun (2022) 13 pp. 7261-7268 [ DOI: 10.1038/s41467-022-34636-4 Pubmed: 36433936 ]

Image sets:
  • Unaligned ultiframe micrographs of ex vivo human vascular AA amyloidosis -patient II
  • Unaligned ultiframe micrographs of ex vivo human vascular AA amyloidosis -patient I
Sort by: Download
Showing 1 - 10 of 32. Page 1 of 4
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [26]
  • EMPIAR [6]

Current status

  • REL [32]

Sample type

  • Protein [26]
  • Ligand [18]
  • Complex [13]
  • Sample [13]

Organism

  • Homo sapiens [12]
  • Bos taurus [7]
  • Mycobacterium tuberculosis [3]
  • Escherichia coli [3]
  • Spodoptera aff. frugiperda 1 bold-2017 [1]
  • Gallus gallus [1]

EM Method

  • Single-particle [22]
  • Helical reconstruction [4]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [9]
  • ≥ 3Å and < 4Å [15]

Model molecular weight

  • 50-100 kDa [5]
  • 100-250 kDa [2]
  • 250-500 kDa [11]
  • 500-1000 kDa [8]

Release Date

  • 2025 [5]
  • 2024 [3]
  • 2023 [1]
  • 2022 [3]
  • 2019 [1]
  • 2018 [1]
  • 2016 [16]
  • 2015 [1]
  • 2014 [1]

Author by name

  • Banerjee S [30]
  • Subramaniam S [21]
  • Merk A [20]
  • Bartesaghi A [19]
  • Falconieri V [16]
  • Rao P [15]
  • Milne JL [12]
  • Milne JLS [12]
  • Earl LA [11]
  • Matthies D [9]
  • Schmidt M [8]
  • Borgnia MJ [6]
  • Pfeiffer PB [6]
  • Pierson J [6]
  • Arkin M [5]
  • Bulfer SL [5]
  • Deshaies RJ [5]
  • Green N [5]
  • Huryn D [5]
  • Mroczkowski B [5]
  • Neitz RJ [5]
  • Wiese S [5]
  • Wipf P [5]
  • Yan Y [5]
  • Baur J [4]
  • Boxer MB [4]
  • Davis MI [4]
  • Faendrich M [4]
  • Fandrich M [4]
  • Fändrich M [4]
  • Haupt C [4]
  • Kuhn L [4]
  • Pragani R [4]
  • Aneja S [3]
  • Biswal B [3]
  • Biswal BK [3]
  • Goyal S [3]
  • Kar D [3]
  • Karimi-farsijani S [3]
  • Kumar V [3]
  • Kumari S [3]
  • Pal RK [3]
  • Raina R [3]
  • Singla M [3]
  • Tiwari S [3]
  • Vinothkumar KR [3]
  • Wu X [3]
  • Amann KU [2]
  • Bijzet J [2]
  • Daniel C [2]
  • Hazenberg BPC [2]
  • Hegenbart U [2]
  • Hitzenberger M [2]
  • Karandur D [2]
  • Kondo Y [2]
  • Kulhanek K [2]
  • Kupfer N [2]
  • Kuriyan J [2]
  • Ognjenovic J [2]
  • Roose JP [2]
  • Schonland SO [2]
  • Sharma K [2]
  • Westermark GT [2]
  • Wong K [2]
  • Zacharias M [2]
  • Aguerrebere C [1]
  • Girdhar A [1]
  • Grigorieff N [1]
  • Guo L [1]
  • Lee C [1]
  • Milne J [1]
  • Rajes C [1]
  • Sapiro G [1]
  • Savran D [1]
  • Schwierz N [1]
  • Shorter J [1]
  • Zhu X [1]

Author by ORCID

  • Subramaniam S [19]
  • Matthies D [8]
  • Borgnia MJ [6]
  • Huryn D [5]
  • Deshaies RJ [5]
  • Arkin M [5]
  • Davis MI [4]
  • Banerjee S [4]
  • Wiese S [3]
  • Biswal B [3]
  • Raina R [3]
  • Schmidt M [3]
  • Kumari S [3]
  • Fandrich M [3]
  • Kar D [3]
  • Kumar V [3]
  • Schonland SO [2]
  • Hegenbart U [2]
  • Kupfer N [2]
  • Pfeiffer PB [2]
  • Zacharias M [1]
  • Kulhanek K [1]
  • Ognjenovic J [1]
  • Grigorieff N [1]
  • Kuriyan J [1]
  • Daniel C [1]
  • Karandur D [1]
  • Westermark GT [1]
  • Hazenberg BPC [1]
  • Kondo Y [1]
  • Sharma K [1]
  • Schwierz N [1]
  • Roose JP [1]
  • Zhu X [1]

Journal

  • SCIENCE [9]
  • MOL PHARMACOL [6]
  • CELL [4]
  • NAT COMMUN [4]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [3]
  • J MOL BIOL [2]
  • PNAS [1]
  • STRUCTURE [1]

Software

  • FREALIGN [11]
  • CHIMERA, ROSETTA, PHENIX, COOT [6]
  • CTFFIND3, EMAN2, RELION [6]
  • RELION [6]
  • CTFFIND [3]
  • FREALIGN, EMAN2 [1]

Microscope

  • FEI TITAN KRIOS [23]
  • TFS KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [26]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [14]
  • GATAN K2 QUANTUM 4K X 4K [6]
  • FEI FALCON III 4K X 4K [3]
  • GATAN K2 4K X 4K [2]
  • FEI FALCON IV 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [6]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [6]
  • MICROGRAPHS - SINGLE FRAME [1]

External links

  • PDB [26]
  • AlphaFold DB [25]
  • UniProt [25]
  • Gene Ontology [24]
  • PDBe-Kb [24]
  • InterPro [17]
  • Pfam [11]
  • ChEBI [8]
  • ChEMBL [8]
  • DrugBank [8]
  • EMPIAR [7]
  • EMDB [6]
  • CATH [4]
  • Complex Portal [3]
  • SCOP2 [1]