Electron Microscopy Data Bank

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Current Database

Current status

Sample type

Organism

Homo sapiens [246]
Escherichia coli [54]
Synthetic construct [41]
Saccharomyces cerevisiae [39]
Severe acute respiratory syndrome coronavirus [37]
Saccharomyces cerevisiae [21]
Mus musculus [20]
Human immunodeficiency virus 1 [20]
Escherichia coli [19]
Lama glama [16]
Bos taurus [15]
Rattus norvegicus [9]
Latrodectus tredecimguttatus [9]
Mycobacterium tuberculosis [9]
Pseudomonas aeruginosa [8]
Azotobacter vinelandii [8]
Sus scrofa [8]
Influenza a virus [7]
Mycolicibacterium smegmatis [7]
Methanospirillum hungatei [7]
Macaca mulatta [7]
Bacillus subtilis [6]
Enterobacteria phage t4 [6]
Thermus thermophilus [6]
Vaccinia virus [5]
Middle east respiratory syndrome-related coronavirus [5]
Komagataella phaffii [5]
Acinetobacter baumannii [5]
Sulfolobus islandicus [5]
Human immunodeficiency virus 1 [4]
Streptococcus thermophilus [4]
Vicugna pacos [4]
Leeuwenhoekiella blandensis [4]
Gallus gallus [4]
Sus scrofa [4]
Heterocephalus glaber [3]
Human cytomegalovirus [3]
Escherichia virus t7 [3]
Mycobacterium tuberculosis [3]
Severe acute respiratory syndrome coronavirus [3]
Primate t-lymphotropic virus 1 [3]
Plasmodium falciparum [3]
Escherichia coli [3]
Toxoplasma gondii [3]
Spodoptera frugiperda [3]
Xenopus laevis [3]
Simian immunodeficiency virus [2]
Bacillus subtilis [2]
Sporosarcina pasteurii [2]
Mycolicibacterium smegmatis [2]
Staphylococcus aureus [2]
Helicobacter pylori [2]
Clostridium tetani [2]
Dna molecule [2]
(no species) [2]
Streptomyces lasalocidi [2]
Bacteriophage sp. [2]
Yarrowia lipolytica [2]
Pyrococcus horikoshii [2]
Saccharomyces cerevisiae [2]
Drosophila melanogaster [2]
Meleagris gallopavo [2]
Ovis aries [2]
Oryctolagus cuniculus [2]
(no species) [1]
Cavia porcellus [1]
Human herpesvirus 1 [1]
Human cytomegalovirus [1]
Allochromatium vinosum [1]
Human mastadenovirus f [1]
Adeno-associated dependoparvovirus a [1]
(no species) [1]
Hepacivirus c [1]
Pseudomonas aeruginosa [1]
Lassa mammarenavirus [1]
Human immunodeficiency virus 1 [1]
Staphylococcus aureus [1]
Streptococcus thermophilus [1]
Clostridium acetobutylicum [1]
Human metapneumovirus [1]
Campylobacter jejuni [1]
Pseudomonas phage 201phi2-1 [1]
Rhodobacteraceae bacterium qy30 [1]
Metamycoplasma arthritidis [1]
Thermoplasma acidophilum [1]
Escherichia virus goslar [1]
Methylorubrum extorquens [1]
(no species) [1]
Escherichia virus qbeta [1]
Schizosaccharomyces pombe [1]
Pseudomonas phage phikz [1]
Langya virus [1]
Bos indicus x bos taurus [1]
Chlamydomonas reinhardtii [1]
(no species) [1]
Haloarcula hispanica virus sh1 [1]
Influenza a virus [1]
Gloeobacter violaceus [1]
Spinacia oleracea [1]
Ligilactobacillus salivarius [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Klinge S [52]
Vanden Broeck A [52]
Li Y [41]
Kwong PD [31]
Bagde SR [29]
Fromme JC [29]
Hardwick SW [29]
Hite RK [29]
Chaker-margot M [28]
Gorman J [28]
Miller L [28]
Singh S [28]
Gagnon MG [25]
Chirgadze DY [24]
Chaplin AK [21]
Haynes BF [21]
Akif Tezcan F [19]
Cook BD [19]
Herzik Jr Ma [19]
Herzik MA [19]
Mcguire KL [19]
Narehood SM [19]
Tezcan FA [19]
Blundell TL [18]
Rybak MY [18]
Acharya P [17]
Allwein B [17]
Bahng S [17]
Batra S [17]
Bruning JG [17]
Devbhandari S [17]
Dunham CM [17]
Hite R [17]
Kumar C [17]
Lee CM [17]
Marians KJ [17]
Remus D [17]
Zhang B [17]
Zhou T [17]
Edwards RJ [16]
Henderson R [16]
Janowska K [16]
Li H [16]
Lin J [16]
Blaza JN [15]
Liu C [15]
Mansouri K [15]
Nguyen HA [15]
Parks R [15]
Stalls V [15]
Gobeil S [14]
Gobeil SM [14]
Kopp MF [14]
Manne K [14]
Mascola JR [14]
Mcdowell S [14]
Olia AS [14]
Yang Y [14]
Britton S [13]
Calsou P [13]
Charbonnier JB [13]
Frit P [13]
Li L [13]
Ropars V [13]
Shapiro L [13]
Bridges HR [12]
Chung I [12]
Hirst J [12]
Pollak MN [12]
Seeger MA [12]
Yin Z [12]
Doria-rose NA [11]
Gamper H [11]
Gonzalez RL [11]
Hou YM [11]
Januliene D [11]
Kefala-stavridi A [11]
Kimbrough EM [11]
Louder MK [11]
Maia De Oliviera T [11]
Mattingly JM [11]
Meek K [11]
Moeller A [11]
Parey K [11]
Rawi R [11]
Zahid S [11]
Amin H [10]
Bordignon E [10]
Borgnia MJ [10]
Ehara H [10]
Guo Y [10]
Hall C [10]
Hilbi H [10]
Kuprov I [10]
Schaefer LV [10]
Alavizargar A [9]
Bylund T [9]
Cerutti G [9]
Chen M [9]
Chuang GY [9]

Author by ORCID

Blaza JN [2]
Schneider C [2]
Ekemezie CL [2]
Hill CH [2]
Sexton PM [2]
Cao J [2]
Rybak MY [2]
Brown CR [2]
Belousoff MJ [2]
Melnikov SV [2]
Csorgo B [2]
Moynihan PJ [2]
Gagnon MG [2]
Wootten D [2]
Fletcher MM [1]
Corbett KD [1]
Lynch EM [1]
Cheedarla N [1]
Danev R [1]
Liang YL [1]
Farrell DP [1]
Khanna K [1]
Tzokov SB [1]
Enustun E [1]
Raun K [1]
Salay L [1]
Deganutti G [1]
Laughlin TG [1]
Hardwick SW [1]
Lubbe L [1]
Chirgadze DY [1]
Kollman JM [1]
Kelly DJ [1]
Hnizda A [1]
Cooper M [1]
Al-otaibi NS [1]
Blundell TL [1]
Bergeron JRC [1]
Yang R [1]
Keov P [1]
Seitz C [1]
Webb BA [1]
Timr S [1]
Davis-gardner ME [1]
Sewell BT [1]
Glendorf T [1]
Liang S [1]
Woodward JD [1]
Bayly-jones C [1]
Josephs TM [1]
Seebacher J [1]
Kumar S [1]
Reedtz-runge S [1]
Amaro RE [1]
Hay DL [1]
Bleichert F [1]
Taylor AJ [1]
Deep A [1]
Sturrock ED [1]
Mccammon JA [1]
Christopoulos A [1]
Villa E [1]
Kumar A [1]
Christopoulos G [1]
Schmidt JM [1]
Hick CA [1]
Ballarin-gonzalez B [1]

Journal

NAT COMMUN [132]
SCIENCE [106]
SCI ADV [56]
BIORXIV [48]
NAT STRUCT MOL BIOL [47]
CELL REP [29]
TO BE PUBLISHED [27]
MOL CELL [25]
NATURE [25]
PNAS [23]
ELIFE [16]
J BIOL CHEM [11]
NUCLEIC ACIDS RES [11]
EMBO J [10]
ACS CHEM BIOL [6]
MBIO [6]
STRUCTURE [6]
CELL [5]
NAT CHEM BIOL [5]
ANAL CHEM [4]
BIOCHIM BIOPHYS ACTA MOL CELL RES [4]
INT J BIOL MACROMOL [4]
PNAS NEXUS [4]
COMMUN BIOL [3]
J EXP MED [3]
SCI TRANSL MED [3]
BIOCHEM BIOPHYS RES COMMUN [2]
CELL HOST MICROBE [2]
J VIROL [2]
NAT MED [2]
PROTEIN SCI [2]
ACTA CRYSTALLOGR D STRUCT BIOL [1]
AM J KIDNEY DIS [1]
ANNU REV BIOPHYS [1]
BIOL CELLULAIRE [1]
CURR TOP DEV BIOL [1]
EMERG MICROBES INFECT [1]
FASEB J [1]
FEBS J [1]
FRONT MOL BIOSCI [1]
ISCIENCE [1]
J GEN PHYSIOL [1]
J MED CHEM [1]
J MOL BIOL [1]
KIDNEY INT [1]
MABS [1]
MOL BIOL CELL [1]
NAT BIOTECHNOL [1]
NAT CELL BIOL [1]
NAT METHODS [1]
NAT MICROBIOL [1]
PLOS PATHOG [1]
PROC SOC EXP BIOL MED [1]

Software

Microscope

Electron Source

Film or detector model

External links

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EMD-51812

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Cas9:crRNA:tracrRNA in complex with PAM-containing non-cognate DNA, PAM-unbound conformation, Streptococcus thermophilus DGCC 7710 CRISPR3 system

Release date: Feb. 18, 2026
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 9h2m
Q-score: 0.367

Gaizauskaite U, Tamulaitiene G, Silanskas A, Gasiunas G, Siksnys V, Sasnauskas G

Mol Cell (2026) [ DOI: doi:10.1016/j.molcel.2026.01.022 Pubmed: 41702403 ]

EMD-52320

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PAM-bound Cas9-Cas1-Cas2-Csn2 supercomplex in the docked conformation, Streptococcus thermophilus DGCC 7710 CRISPR3 system

Release date: Feb. 18, 2026
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9hp8
Q-score: 0.327

Gaizauskaite U, Tamulaitiene G, Silanskas A, Gasiunas G, Siksnys V, Sasnauskas G

Mol Cell (2026) [ DOI: doi:10.1016/j.molcel.2026.01.022 Pubmed: 41702403 ]

EMD-52324

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Cas9-Cas1-Cas2-Csn2 supercomplex with dsDNA in PAM-unbound conformation, Streptococcus thermophilus DGCC 7710 CRISPR3 system

Release date: Feb. 18, 2026
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 9hp9
Q-score: 0.332

Gaizauskaite U, Tamulaitiene G, Silanskas A, Gasiunas G, Siksnys V, Sasnauskas G

Mol Cell (2026) [ DOI: doi:10.1016/j.molcel.2026.01.022 Pubmed: 41702403 ]

EMD-52886

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PAM-bound Cas9-Cas1-Cas2-Csn2 supercomplex in the locked conformation, Streptococcus thermophilus DGCC 7710 CRISPR3 system

Release date: Feb. 18, 2026
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 9q85
Q-score: 0.329

Gaizauskaite U, Tamulaitiene G, Silanskas A, Gasiunas G, Siksnys V, Sasnauskas G

Mol Cell (2026) [ DOI: doi:10.1016/j.molcel.2026.01.022 Pubmed: 41702403 ]

EMD-72469

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Structure of naked mole-rat ribosome with P/E tRNA and eEF2 rotated

CryoEM

Release date: Feb. 18, 2026
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 9y42

Gutierrez-Vargas C, De S, Maji S, Liu Z, Ke Z, Niess M, Seluanov A, Gorbunova V, Frank J

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag006 Pubmed: 41603730 ]

EMD-72470

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Structure of naked mole-rat ribosome rotated, tRNAs, and mRNA

CryoEM

Release date: Feb. 18, 2026
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 9y44

Gutierrez-Vargas C, De S, Maji S, Liu Z, Ke Z, Niess M, Seluanov A, Gorbunova V, Frank J

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag006 Pubmed: 41603730 ]

EMD-72475

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Structure of tuco-tuco ribosome with P/E tRNA and eEF2 rotated

CryoEM

Release date: Feb. 18, 2026
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9y49

Gutierrez-Vargas C, De S, Maji S, Liu Z, Ke Z, Niess M, Seluanov A, Gorbunova V, Frank J

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag006 Pubmed: 41603730 ]

EMD-72483

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Structure of guinea pig ribosome with P/E-tRNA and mRNA

CryoEM

Release date: Feb. 18, 2026
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 9y4h

Gutierrez-Vargas C, De S, Maji S, Liu Z, Ke Z, Niess M, Seluanov A, Gorbunova V, Frank J

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag006 Pubmed: 41603730 ]

EMD-74615

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Structure of naked mole-rat ribosome non-rotated

CryoEM

Release date: Feb. 18, 2026
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9zrg

Gutierrez-Vargas C, De S, Maji S, Liu Z, Ke Z, Niess M, Seluanov A, Gorbunova V, Frank J

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag006 Pubmed: 41603730 ]

EMD-53173

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Cryo-EM structure of mouse TRPM3 alpha 2 in complex with antagonist Ononetin

CryoEM

Consensus map

Release date: Feb. 11, 2026
Resolution: 2.61 Å
EM Method: Single-particle
Fitted PDBs: 9qhm
Q-score: 0.471

Shkumatov AV, Schenck S, Brunner JD

To Be Published

Sort by: Download

Showing 1 - 10 of 599. Page 1 of 60

Display:

Statistics

Download

Select database:

EMDB [599]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [246]
Escherichia coli [54]
Synthetic construct [41]
Saccharomyces cerevisiae [39]
Severe acute respiratory syndrome coronavirus [37]
Saccharomyces cerevisiae [21]
Mus musculus [20]
Human immunodeficiency virus 1 [20]
Escherichia coli [19]
Lama glama [16]
Bos taurus [15]
Rattus norvegicus [9]
Latrodectus tredecimguttatus [9]
Mycobacterium tuberculosis [9]
Pseudomonas aeruginosa [8]
Azotobacter vinelandii [8]
Sus scrofa [8]
Influenza a virus [7]
Mycolicibacterium smegmatis [7]
Methanospirillum hungatei [7]
Macaca mulatta [7]
Bacillus subtilis [6]
Enterobacteria phage t4 [6]
Thermus thermophilus [6]
Vaccinia virus [5]
Middle east respiratory syndrome-related coronavirus [5]
Komagataella phaffii [5]
Acinetobacter baumannii [5]
Sulfolobus islandicus [5]
Human immunodeficiency virus 1 [4]
Streptococcus thermophilus [4]
Vicugna pacos [4]
Leeuwenhoekiella blandensis [4]
Gallus gallus [4]
Sus scrofa [4]
Heterocephalus glaber [3]
Human cytomegalovirus [3]
Escherichia virus t7 [3]
Mycobacterium tuberculosis [3]
Severe acute respiratory syndrome coronavirus [3]
Primate t-lymphotropic virus 1 [3]
Plasmodium falciparum [3]
Escherichia coli [3]
Toxoplasma gondii [3]
Spodoptera frugiperda [3]
Xenopus laevis [3]
Simian immunodeficiency virus [2]
Bacillus subtilis [2]
Sporosarcina pasteurii [2]
Mycolicibacterium smegmatis [2]
Staphylococcus aureus [2]
Helicobacter pylori [2]
Clostridium tetani [2]
Dna molecule [2]
(no species) [2]
Streptomyces lasalocidi [2]
Bacteriophage sp. [2]
Yarrowia lipolytica [2]
Pyrococcus horikoshii [2]
Saccharomyces cerevisiae [2]
Drosophila melanogaster [2]
Meleagris gallopavo [2]
Ovis aries [2]
Oryctolagus cuniculus [2]
(no species) [1]
Cavia porcellus [1]
Human herpesvirus 1 [1]
Human cytomegalovirus [1]
Allochromatium vinosum [1]
Human mastadenovirus f [1]
Adeno-associated dependoparvovirus a [1]
(no species) [1]
Hepacivirus c [1]
Pseudomonas aeruginosa [1]
Lassa mammarenavirus [1]
Human immunodeficiency virus 1 [1]
Staphylococcus aureus [1]
Streptococcus thermophilus [1]
Clostridium acetobutylicum [1]
Human metapneumovirus [1]
Campylobacter jejuni [1]
Pseudomonas phage 201phi2-1 [1]
Rhodobacteraceae bacterium qy30 [1]
Metamycoplasma arthritidis [1]
Thermoplasma acidophilum [1]
Escherichia virus goslar [1]
Methylorubrum extorquens [1]
(no species) [1]
Escherichia virus qbeta [1]
Schizosaccharomyces pombe [1]
Pseudomonas phage phikz [1]
Langya virus [1]
Bos indicus x bos taurus [1]
Chlamydomonas reinhardtii [1]
(no species) [1]
Haloarcula hispanica virus sh1 [1]
Influenza a virus [1]
Gloeobacter violaceus [1]
Spinacia oleracea [1]
Ligilactobacillus salivarius [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Klinge S [52]
Vanden Broeck A [52]
Li Y [41]
Kwong PD [31]
Bagde SR [29]
Fromme JC [29]
Hardwick SW [29]
Hite RK [29]
Chaker-margot M [28]
Gorman J [28]
Miller L [28]
Singh S [28]
Gagnon MG [25]
Chirgadze DY [24]
Chaplin AK [21]
Haynes BF [21]
Akif Tezcan F [19]
Cook BD [19]
Herzik Jr Ma [19]
Herzik MA [19]
Mcguire KL [19]
Narehood SM [19]
Tezcan FA [19]
Blundell TL [18]
Rybak MY [18]
Acharya P [17]
Allwein B [17]
Bahng S [17]
Batra S [17]
Bruning JG [17]
Devbhandari S [17]
Dunham CM [17]
Hite R [17]
Kumar C [17]
Lee CM [17]
Marians KJ [17]
Remus D [17]
Zhang B [17]
Zhou T [17]
Edwards RJ [16]
Henderson R [16]
Janowska K [16]
Li H [16]
Lin J [16]
Blaza JN [15]
Liu C [15]
Mansouri K [15]
Nguyen HA [15]
Parks R [15]
Stalls V [15]
Gobeil S [14]
Gobeil SM [14]
Kopp MF [14]
Manne K [14]
Mascola JR [14]
Mcdowell S [14]
Olia AS [14]
Yang Y [14]
Britton S [13]
Calsou P [13]
Charbonnier JB [13]
Frit P [13]
Li L [13]
Ropars V [13]
Shapiro L [13]
Bridges HR [12]
Chung I [12]
Hirst J [12]
Pollak MN [12]
Seeger MA [12]
Yin Z [12]
Doria-rose NA [11]
Gamper H [11]
Gonzalez RL [11]
Hou YM [11]
Januliene D [11]
Kefala-stavridi A [11]
Kimbrough EM [11]
Louder MK [11]
Maia De Oliviera T [11]
Mattingly JM [11]
Meek K [11]
Moeller A [11]
Parey K [11]
Rawi R [11]
Zahid S [11]
Amin H [10]
Bordignon E [10]
Borgnia MJ [10]
Ehara H [10]
Guo Y [10]
Hall C [10]
Hilbi H [10]
Kuprov I [10]
Schaefer LV [10]
Alavizargar A [9]
Bylund T [9]
Cerutti G [9]
Chen M [9]
Chuang GY [9]

Author by ORCID

Blaza JN [2]
Schneider C [2]
Ekemezie CL [2]
Hill CH [2]
Sexton PM [2]
Cao J [2]
Rybak MY [2]
Brown CR [2]
Belousoff MJ [2]
Melnikov SV [2]
Csorgo B [2]
Moynihan PJ [2]
Gagnon MG [2]
Wootten D [2]
Fletcher MM [1]
Corbett KD [1]
Lynch EM [1]
Cheedarla N [1]
Danev R [1]
Liang YL [1]
Farrell DP [1]
Khanna K [1]
Tzokov SB [1]
Enustun E [1]
Raun K [1]
Salay L [1]
Deganutti G [1]
Laughlin TG [1]
Hardwick SW [1]
Lubbe L [1]
Chirgadze DY [1]
Kollman JM [1]
Kelly DJ [1]
Hnizda A [1]
Cooper M [1]
Al-otaibi NS [1]
Blundell TL [1]
Bergeron JRC [1]
Yang R [1]
Keov P [1]
Seitz C [1]
Webb BA [1]
Timr S [1]
Davis-gardner ME [1]
Sewell BT [1]
Glendorf T [1]
Liang S [1]
Woodward JD [1]
Bayly-jones C [1]
Josephs TM [1]
Seebacher J [1]
Kumar S [1]
Reedtz-runge S [1]
Amaro RE [1]
Hay DL [1]
Bleichert F [1]
Taylor AJ [1]
Deep A [1]
Sturrock ED [1]
Mccammon JA [1]
Christopoulos A [1]
Villa E [1]
Kumar A [1]
Christopoulos G [1]
Schmidt JM [1]
Hick CA [1]
Ballarin-gonzalez B [1]

Journal

NAT COMMUN [132]
SCIENCE [106]
SCI ADV [56]
BIORXIV [48]
NAT STRUCT MOL BIOL [47]
CELL REP [29]
TO BE PUBLISHED [27]
MOL CELL [25]
NATURE [25]
PNAS [23]
ELIFE [16]
J BIOL CHEM [11]
NUCLEIC ACIDS RES [11]
EMBO J [10]
ACS CHEM BIOL [6]
MBIO [6]
STRUCTURE [6]
CELL [5]
NAT CHEM BIOL [5]
ANAL CHEM [4]
BIOCHIM BIOPHYS ACTA MOL CELL RES [4]
INT J BIOL MACROMOL [4]
PNAS NEXUS [4]
COMMUN BIOL [3]
J EXP MED [3]
SCI TRANSL MED [3]
BIOCHEM BIOPHYS RES COMMUN [2]
CELL HOST MICROBE [2]
J VIROL [2]
NAT MED [2]
PROTEIN SCI [2]
ACTA CRYSTALLOGR D STRUCT BIOL [1]
AM J KIDNEY DIS [1]
ANNU REV BIOPHYS [1]
BIOL CELLULAIRE [1]
CURR TOP DEV BIOL [1]
EMERG MICROBES INFECT [1]
FASEB J [1]
FEBS J [1]
FRONT MOL BIOSCI [1]
ISCIENCE [1]
J GEN PHYSIOL [1]
J MED CHEM [1]
J MOL BIOL [1]
KIDNEY INT [1]
MABS [1]
MOL BIOL CELL [1]
NAT BIOTECHNOL [1]
NAT CELL BIOL [1]
NAT METHODS [1]
NAT MICROBIOL [1]
PLOS PATHOG [1]
PROC SOC EXP BIOL MED [1]

Software

Microscope

Electron Source

Film or detector model

External links