Electron Microscopy Data Bank

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Current Database

Current status

Sample type

Organism

Homo sapiens [250]
Escherichia coli [54]
Synthetic construct [41]
Saccharomyces cerevisiae [39]
Severe acute respiratory syndrome coronavirus [37]
Mus musculus [24]
Saccharomyces cerevisiae [21]
Human immunodeficiency virus 1 [20]
Escherichia coli [19]
Oryctolagus cuniculus [18]
Influenza a virus [16]
Lama glama [16]
Bos taurus [16]
Azotobacter vinelandii [14]
Rattus norvegicus [9]
Latrodectus tredecimguttatus [9]
Mycobacterium tuberculosis [9]
Sus scrofa [9]
Pseudomonas aeruginosa [8]
Mycolicibacterium smegmatis [7]
Methanospirillum hungatei [7]
Macaca mulatta [7]
Bacillus subtilis [6]
Enterobacteria phage t4 [6]
Thermus thermophilus [6]
Vaccinia virus [5]
Middle east respiratory syndrome-related coronavirus [5]
Komagataella phaffii [5]
Acinetobacter baumannii [5]
Gallus gallus [5]
Sulfolobus islandicus [5]
Human immunodeficiency virus 1 [4]
Streptococcus thermophilus [4]
Vicugna pacos [4]
Leeuwenhoekiella blandensis [4]
Sus scrofa [4]
Heterocephalus glaber [3]
Human cytomegalovirus [3]
Escherichia virus t7 [3]
Mycobacterium tuberculosis [3]
Severe acute respiratory syndrome coronavirus [3]
Primate t-lymphotropic virus 1 [3]
Plasmodium falciparum [3]
Escherichia coli [3]
Toxoplasma gondii [3]
Spodoptera frugiperda [3]
Xenopus laevis [3]
Simian immunodeficiency virus [2]
Bacillus subtilis [2]
Sporosarcina pasteurii [2]
Hathewaya histolytica [2]
Mycolicibacterium smegmatis [2]
Staphylococcus aureus [2]
Helicobacter pylori [2]
Clostridium tetani [2]
Dna molecule [2]
(no species) [2]
Streptomyces lasalocidi [2]
Arabidopsis thaliana [2]
Bacteriophage sp. [2]
Yarrowia lipolytica [2]
Pyrococcus horikoshii [2]
Saccharomyces cerevisiae [2]
Drosophila melanogaster [2]
Meleagris gallopavo [2]
Ovis aries [2]
(no species) [1]
Cavia porcellus [1]
Human herpesvirus 1 [1]
Human cytomegalovirus [1]
Allochromatium vinosum [1]
Human mastadenovirus f [1]
Adeno-associated dependoparvovirus a [1]
(no species) [1]
Hepacivirus c [1]
Pseudomonas aeruginosa [1]
Lassa mammarenavirus [1]
Human immunodeficiency virus 1 [1]
Staphylococcus aureus [1]
Streptococcus thermophilus [1]
Clostridium acetobutylicum [1]
Human metapneumovirus [1]
Campylobacter jejuni [1]
Pseudomonas phage 201phi2-1 [1]
Rhodobacteraceae bacterium qy30 [1]
Metamycoplasma arthritidis [1]
Thermoplasma acidophilum [1]
Escherichia virus goslar [1]
Methylorubrum extorquens [1]
(no species) [1]
Escherichia virus qbeta [1]
Schizosaccharomyces pombe [1]
Pseudomonas phage phikz [1]
Langya virus [1]
Bos indicus x bos taurus [1]
Chlamydomonas reinhardtii [1]
(no species) [1]
Haloarcula hispanica virus sh1 [1]
Influenza a virus [1]
Gloeobacter violaceus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Li Y [72]
Klinge S [52]
Vanden Broeck A [52]
Cook BD [50]
Herzik MA [50]
Narehood SM [50]
Bachochin MJ [31]
Dukakis P [31]
Enos SE [31]
Grotjahn DA [31]
Ji D [31]
Kuschnerus IC [31]
Kwong PD [31]
Rahmani H [31]
Redford HT [31]
Redford TH [31]
Bagde SR [29]
Fromme JC [29]
Hardwick SW [29]
Hite RK [29]
Chaker-margot M [28]
Gorman J [28]
Miller L [28]
Singh S [28]
Gagnon MG [25]
Chirgadze DY [24]
Chaplin AK [21]
Haynes BF [21]
Akif Tezcan F [19]
Herzik Jr Ma [19]
Mcguire KL [19]
Tezcan FA [19]
Blundell TL [18]
Rybak MY [18]
Acharya P [17]
Allwein B [17]
Bahng S [17]
Batra S [17]
Bruning JG [17]
Devbhandari S [17]
Dunham CM [17]
Hite R [17]
Kumar C [17]
Lee CM [17]
Marians KJ [17]
Remus D [17]
Zhang B [17]
Zhou T [17]
Edwards RJ [16]
Henderson R [16]
Janowska K [16]
Li H [16]
Lin J [16]
Blaza JN [15]
Liu C [15]
Mansouri K [15]
Nguyen HA [15]
Parks R [15]
Stalls V [15]
Gobeil S [14]
Gobeil SM [14]
Kopp MF [14]
Manne K [14]
Mascola JR [14]
Mcdowell S [14]
Olia AS [14]
Yang Y [14]
Britton S [13]
Calsou P [13]
Charbonnier JB [13]
Frit P [13]
Li L [13]
Ropars V [13]
Shapiro L [13]
Bridges HR [12]
Chung I [12]
Hirst J [12]
Pollak MN [12]
Seeger MA [12]
Yin Z [12]
Chen M [11]
Doria-rose NA [11]
Gamper H [11]
Gonzalez RL [11]
Hou YM [11]
Januliene D [11]
Kefala-stavridi A [11]
Kimbrough EM [11]
Louder MK [11]
Maia De Oliviera T [11]
Mattingly JM [11]
Meek K [11]
Moeller A [11]
Parey K [11]
Rawi R [11]
Zahid S [11]
Amin H [10]
Bordignon E [10]
Borgnia MJ [10]
Ehara H [10]

Author by ORCID

Klinge S [52]
Vanden Broeck A [52]
Narehood SM [50]
Cook BD [50]
Li Y [50]
Grotjahn DA [31]
Herzik MA [31]
Enos SE [31]
Bachochin MJ [31]
Kuschnerus IC [31]
Rahmani H [31]
Kwong PD [31]
Redford TH [31]
Dukakis P [31]
Ji D [31]
Bagde SR [29]
Fromme JC [29]
Hite RK [29]
Singh S [28]
Miller L [28]
Chaker-margot M [28]
Hardwick SW [27]
Gorman J [25]
Chirgadze DY [20]
Herzik Jr Ma [19]
Akif Tezcan F [19]
Gagnon MG [19]
Mcguire KL [19]
Blundell TL [18]
Chaplin AK [18]
Remus D [17]
Allwein B [17]
Bruning JG [17]
Batra S [17]
Lee CM [17]
Lin J [16]
Acharya P [16]
Rybak MY [16]
Edwards RJ [16]
Blaza JN [15]
Mansouri K [15]
Stalls V [15]
Gobeil SM [14]
Manne K [14]
Frit P [13]
Britton S [13]
Dunham CM [13]
Bridges HR [12]
Hirst J [12]
Chung I [12]
Yin Z [12]
Pollak MN [12]
Hou YM [11]
Gamper H [11]
Zahid S [11]
Januliene D [11]
Li L [11]
Parey K [11]
Maia De Oliviera T [11]
Calsou P [10]
Borgnia MJ [10]
Gonzalez RL [10]
Li H [10]
Zhou T [10]
Charbonnier JB [10]
Ehara H [10]
Mattingly JM [10]
Sekine SI [9]
Yang Y [9]
Kalyankumar KS [9]
Klink BU [9]
Bylund T [9]
Alavizargar A [9]
Gatsogiannis C [9]
Chen M [9]
Liu C [9]
Heuer A [9]
Kaminishi T [8]
Guo Y [8]
Schedlbauer A [8]
Connell SR [8]
Balasubramanian S [8]
Meek K [8]
Schalch T [8]
Capuni R [8]
Iturrioz I [8]
Modesti M [8]
Diercks T [8]
Amin H [8]
Cerutti G [8]
Tariq A [8]
Lavin JL [8]
Fucini P [8]
Hsu AL [8]
Lopez-alonso JP [8]
Gil-carton D [8]
Diver MM [7]
Murphy BJ [7]
Zhu Q [7]
Pfeil-gardiner O [7]

Journal

NAT COMMUN [134]
SCIENCE [108]
BIORXIV [79]
SCI ADV [56]
NAT STRUCT MOL BIOL [47]
CELL REP [30]
TO BE PUBLISHED [28]
MOL CELL [25]
NATURE [25]
PNAS [23]
ELIFE [16]
NUCLEIC ACIDS RES [14]
EMBO J [11]
J BIOL CHEM [11]
ACS CHEM BIOL [6]
CELL [6]
MBIO [6]
STRUCTURE [6]
NAT CHEM BIOL [5]
ANAL CHEM [4]
BIOCHIM BIOPHYS ACTA MOL CELL RES [4]
INT J BIOL MACROMOL [4]
PNAS NEXUS [4]
ACTA CRYSTALLOGR D STRUCT BIOL [3]
COMMUN BIOL [3]
J AM CHEM SOC [3]
J EXP MED [3]
PLOS BIOL [3]
SCI TRANSL MED [3]
BIOCHEM BIOPHYS RES COMMUN [2]
CELL HOST MICROBE [2]
CURR TOP DEV BIOL [2]
J VIROL [2]
NAT MED [2]
NAT METHODS [2]
PROTEIN SCI [2]
AM J KIDNEY DIS [1]
ANNU REV BIOPHYS [1]
BIOCHEM J [1]
BIOL CELLULAIRE [1]
EMERG MICROBES INFECT [1]
FASEB J [1]
FEBS J [1]
FRONT MOL BIOSCI [1]
ISCIENCE [1]
J GEN PHYSIOL [1]
J MED CHEM [1]
J MOL BIOL [1]
KIDNEY INT [1]
MABS [1]
MOL BIOL CELL [1]
NAT BIOTECHNOL [1]
NAT CELL BIOL [1]
NAT MICROBIOL [1]
PLOS PATHOG [1]
PROC SOC EXP BIOL MED [1]

Software

Microscope

Electron Source

Film or detector model

External links

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EMD-55425

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Cryo-EM reconstruction of the Kinesin KIF5A motor domain decorated GMPCPP microtubule

CryoEM

Release date: May 6, 2026
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 9t17
Q-score: 0.568

Zhang D, Munoz-Hernandez H, Filipcik P, Sejwal K, Xu Y, Choi SR, Steinmetz MO, Wieczorek M

Acta Crystallogr D Struct Biol (2026) [ DOI: doi:10.1107/S2059798326003062 Pubmed: 42044018 ]

EMD-55431

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Cryo-EM reconstruction of undecorated GDP microtubule

CryoEM

Release date: May 6, 2026
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9t1d
Q-score: 0.464

Zhang D, Munoz-Hernandez H, Filipcik P, Sejwal K, Xu Y, Choi SR, Steinmetz MO, Wieczorek M

Acta Crystallogr D Struct Biol (2026) [ DOI: doi:10.1107/S2059798326003062 Pubmed: 42044018 ]

EMD-70012

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TMEM16F in liposomes in the presence of Ca2 closed state

CryoEM

Release date: May 6, 2026
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 9o1m
Q-score: 0.464

Feng Z, Alvarenga OE, Di Zanni E, Lee S, Khelashvili G, Accardi A

To Be Published

EMD-53307

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Mouse RPS15 P131 Mutant Ribosome POST translocation state

CryoEM

Release date: April 15, 2026
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 9qql
Q-score: 0.488

Santo PE, Astier A, Plisson-Chastang C

To Be Published

EMD-63337

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Composite map of apo collagenase H from Hathewaya histolytica

Composite map

CryoEM

Release date: April 15, 2026
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9lrk
Q-score: 0.583

Oki H, Takebe K, Bonsu A, Fujii K, Masuda R, Henderson N, Mima T, Koide T, Moradi M, Matsushita O, Sakon J, Kawahara K

Nat Commun (2026) [ Pubmed: 41927550 DOI: doi:10.1038/s41467-026-71099-3 ]

EMD-63511

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Composite map of collagenase H E416Q mutant from Hathewaya histolytica in complex with collagen model peptide Pro-Hyp-Gly 12

Composite map

CryoEM

Release date: April 15, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9lyi
Q-score: 0.542

Oki H, Takebe K, Bonsu A, Fujii K, Masuda R, Henderson N, Mima T, Koide T, Moradi M, Matsushita O, Sakon J, Kawahara K

Nat Commun (2026) [ Pubmed: 41927550 DOI: doi:10.1038/s41467-026-71099-3 ]

EMD-73991

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Cryo-EM structure of human apo mTORC2

CryoEM

Release date: April 15, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9zbj
Q-score: 0.384

Taylor MS, Chen M, Hancock M, Wranik M, Miller BD, O'Meara TR, Palanski BA, Ficarro SB, Groendyke BJ, Xiang Y, Kondo KT, Linde-Garelli KY, Lee MJ, Mondal D, Freund D, Congreve S, Matas K, Hennink M, Xibinaku K, Valenstein ML, van Eeuwen T, Marto JA, Sali A, Shi Y, Gray NS, Sabatini DM, Chu N, Rogala KB, Cole PA