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Current Database

  • EMDB [61]

Current status

  • REL [61]

Sample type

  • Protein [58]
  • Complex [54]
  • Ligand [44]
  • DNA [19]
  • RNA [10]
  • Virus [5]
  • Cell [1]
  • Cellular component [1]

Organism

  • Homo sapiens [16]
  • Saccharomyces cerevisiae [10]
  • Mus musculus [4]
  • Escherichia coli [4]
  • Mesocricetus auratus [2]
  • Bacillus subtilis [2]
  • Adeno-associated virus [2]
  • Leishmania major [2]
  • Escherichia coli [2]
  • Saccharomyces cerevisiae [2]
  • Drosophila melanogaster [2]
  • Danio rerio [2]
  • Adeno-associated dependoparvovirus b [2]
  • Bos taurus [2]
  • Rattus norvegicus [1]
  • Human herpesvirus 1 [1]
  • Adeno-associated dependoparvovirus a [1]
  • Vesicular stomatitis virus [1]
  • Indiana vesiculovirus [1]
  • Synechocystis sp. pcc 6803 [1]
  • Human immunodeficiency virus 1 [1]
  • Human immunodeficiency virus 1 [1]
  • Spraguea lophii [1]
  • Adeno-associated dependoparvovirus a [1]
  • Prevotella copri [1]
  • Thermothielavioides terrestris [1]
  • Schistosoma mansoni [1]
  • Thermococcus kodakarensis [1]

EM Method

  • Single-particle [58]
  • Helical reconstruction [2]
  • Electron Crystallography [1]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [28]
  • ≥ 3Å and < 4Å [24]
  • ≥ 4Å and < 5Å [4]
  • ≥ 6Å and < 8Å [2]

Release Date

  • 2026 [7]
  • 2025 [7]
  • 2024 [5]
  • 2023 [5]
  • 2022 [13]
  • 2021 [3]
  • 2020 [12]
  • 2019 [2]
  • 2018 [4]
  • 2017 [3]

Author by name

  • Hite RK [11]
  • Castaneda JC [10]
  • Devbhandari S [10]
  • Kumar C [10]
  • Remus D [10]
  • Schrecker M [10]
  • Dhar A [5]
  • Nobe Y [5]
  • Pavletich NP [5]
  • Taoka M [5]
  • Naschberger A [4]
  • Aibara S [3]
  • Amunts A [3]
  • Andrell J [3]
  • Barrientos A [3]
  • Chapman MS [3]
  • Chen J [3]
  • Del Olio S [3]
  • Flygaard RK [3]
  • Hassan A [3]
  • Itoh Y [3]
  • Izumikawa K [3]
  • Peralta C [3]
  • Singh V [3]
  • Wang R [3]
  • Wang S [3]
  • Whitford PC [3]
  • Ambudkar SV [2]
  • Anand G [2]
  • Armache J-P [2]
  • Armache JP [2]
  • Aryal S [2]
  • Babitzke P [2]
  • Bashan A [2]
  • Bettler E [2]
  • Boo ZZ [2]
  • Camara-wilpert S [2]
  • Carabias A [2]
  • Carabias Del Rey A [2]
  • Chaptal V [2]
  • Chen L [2]
  • Clarke OB [2]
  • Cohen-chalamish S [2]
  • Ding D [2]
  • Dollinger R [2]
  • Doniger T [2]
  • Esser L [2]
  • Falson P [2]
  • Fuglsang A [2]
  • Gilmour DS [2]
  • Gobet A [2]
  • Gong Q [2]
  • Gottesman MM [2]
  • Grigorieff N [2]
  • Hagen WJH [2]
  • Hendriks IA [2]
  • Honzejkova K [2]
  • Hsieh CM [2]
  • Huang RK [2]
  • Jault JM [2]
  • Johnson ZL [2]
  • Kang Y [2]
  • Khatter H [2]
  • Kosek D [2]
  • Lang ZC [2]
  • Large EE [2]
  • Lopez-mendez B [2]
  • Luk SH [2]
  • Madmoni H [2]
  • Magnard S [2]
  • Martin J [2]
  • Mestre MR [2]
  • Michaeli S [2]
  • Moissonnier L [2]
  • Montoya G [2]
  • Morton AJ [2]
  • Muller CW [2]
  • Murakami KS [2]
  • Nielsen ML [2]
  • Obsil T [2]
  • Obsilova V [2]
  • Olami M [2]
  • Orelle C [2]
  • Pape T [2]
  • Pescher P [2]
  • Pinilla-redondo R [2]
  • Prina E [2]
  • Rajan KS [2]
  • Reversade B [2]
  • Robey R [2]
  • Schoehn G [2]
  • Schultz J [2]
  • Silveria M [2]
  • Silveria MA [2]
  • Spath GF [2]
  • Teo DET [2]
  • Terreux R [2]
  • Unger R [2]
  • Venette-smith NL [2]
  • Venkatakrishnan V [2]

Journal

  • NAT COMMUN [17]
  • ELIFE [12]
  • NATURE [7]
  • CELL [4]
  • CELL REP [4]
  • BIORXIV [3]
  • PNAS [3]
  • VIRUSES [3]
  • MOL CELL [2]
  • COMMUN BIOL [1]
  • COMMUN CHEM [1]
  • EMBO J [1]
  • J AM CHEM SOC [1]
  • J BIOL CHEM [1]
  • NAT MICROBIOL [1]
  • NAT STRUCT MOL BIOL [1]
  • STRUCTURE [1]
  • VIROLOGY [1]

Software

  • CRYOSPARC [24]
  • RELION [21]
  • FREALIGN [4]
  • CISTEM [1]
  • UCSF CHIMERAX [1]

Microscope

  • FEI TITAN KRIOS [40]
  • TFS KRIOS [11]
  • TFS TALOS [3]
  • FEI TALOS ARCTICA [2]
  • FEI POLARA 300 [1]
  • FEI TECNAI ARCTICA [1]
  • FEI TECNAI F20 [1]
  • FEI TITAN [1]
  • JEOL CRYO ARM 300 [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [61]

Film or detector model

  • GATAN K3 6K X 4K [21]
  • GATAN K2 SUMMIT 4K X 4K [20]
  • GATAN K3 BIOQUANTUM 6K X 4K [9]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • FEI FALCON III 4K X 4K [3]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • AlphaFold DB [51]
  • EMPIAR [14]
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Showing 1 - 10 of 61. Page 1 of 7
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EMD-54660
Download Map
3D View
Cryo-EM structure of Rat NHE6 in detergent
CryoEM
Release date: July 29, 2026
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 9s8d
Q-score: 0.55
Similar entry percentile: 66%

Jung S, Yeo H, Li H, Kokane S, Reichenbach T, Gulati A, Albano G, Kirschbaum C, Ho TM, Landreh M, Abramsson M, Robinson CV, Fuster DG, Drew D

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-75877-x Pubmed: 42581050 ]

EMD-70383
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3D View
Zebrafish Abcb4 in IF-narrow conformation in the presence of Tariquidar TQR-IF-Narrow
CryoEM
Release date: June 3, 2026
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 9oe1
Q-score: 0.49
Similar entry percentile: 50%

Zhan J, Hsieh CM, Esser L, Lang ZC, Morton AJ, Robey R, Zhou F, Ambudkar SV, Huang RK, Gottesman MM, Xia D

Nat Commun (2026) 17 [ Pubmed: 42218127 DOI: doi:10.1038/s41467-026-73751-4 ]

EMD-70384
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3D View
Zebrafish Abcb4 in IF-medium conformation in the presence of Tariquidar TQR-IF-Medium
CryoEM
Release date: June 3, 2026
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 9oe2
Q-score: 0.496
Similar entry percentile: 60%

Zhan J, Hsieh CM, Esser L, Lang ZC, Morton AJ, Robey R, Zhou F, Ambudkar SV, Huang RK, Gottesman MM, Xia D

Nat Commun (2026) 17 [ Pubmed: 42218127 DOI: doi:10.1038/s41467-026-73751-4 ]

EMD-71417
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Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles
CryoEM
Release date: April 29, 2026
Resolution: 2.28 Å
EM Method: Single-particle
Fitted PDBs: 9p9l

Wu C, Meuser ME, Rey JS, Meshkin H, Yang R, Devarkar SC, Freniere C, Shi J, Aiken C, Perilla JR, Xiong Y

J Am Chem Soc (2025) 147 pp. 42685-42700 [ Pubmed: 41198571 DOI: doi:10.1021/jacs.5c13735 ]

EMD-53531
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Cryo-EM structure of the complex CDK16:CCNY:14-3-3
CryoEM
Release date: March 25, 2026
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9r2i
Q-score: 0.462
Similar entry percentile: 50%

Kohoutova K, Kosek D, Brzezina A, Honzejkova K, Obsilova V, Obsil T

Nat Commun (2026) 17 [ Pubmed: 41857027 DOI: doi:10.1038/s41467-026-70778-5 ]

EMD-66639
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Raw data
EMPIAR-13265 EMPIAR-13211 EMPIAR-13264
In situ structure of bacterial 50S ribosomes
CryoEM
Release date: Feb. 4, 2026
Resolution: 2.98 Å
EM Method: Single-particle

Al-Amoudi A, Baradaran R, Yuan X, Wu F, Naschberger A

Commun Biol (2025) 9 pp. 166-166 [ Pubmed: 41476251 DOI: doi:10.1038/s42003-025-09441-6 ]

EMD-48632
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Mus musculus TASK-1 KCNK3 in MSP1E3D1 lipid nanodisc at pH 6.0 and 100 mM KCl
CryoEM
Release date: Jan. 28, 2026
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9muh
Q-score: 0.426
Similar entry percentile: 26%

Docter T, Lee NS, Reid MS, Brohawn SG

Structure (2026) 34 pp. 1007- [ Pubmed: 42229429 DOI: doi:10.1016/j.str.2026.05.002 ]

EMD-51374
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Full-lenght Nedd4-2 E3 ubiquitin ligase in presence of Ca2
CryoEM
Release date: June 4, 2025
Resolution: 4.11 Å
EM Method: Single-particle
Fitted PDBs: 9gim
Q-score: 0.388
Similar entry percentile: 68%

Janosev M, Kosek D, Tekel A, Joshi R, Honzejkova K, Pohl P, Obsil T, Obsilova V

Nat Commun (2025) 16 pp. 4875-4875 [ Pubmed: 40419858 DOI: doi:10.1038/s41467-025-60207-4 ]

EMD-48625
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Structure of a native Drosophila melanogaster Nucleosome Elongation Complex Pol II EC-nucleosome . Overall structure
CryoEM
Release date: Feb. 19, 2025
Resolution: 7.8 Å
EM Method: Single-particle

Venette-Smith NL, Vishwakarma RK, Venkatakrishnan V, Dollinger R, Schultz J, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami KS

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-75963-0 ]

EMD-48626
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Structure of a native Drosophila melanogaster Nucleosome Elongation Complex Pol II EC-nucleosome . Composite map
Composite map
CryoEM
Release date: Feb. 19, 2025
Resolution: 7.8 Å
EM Method: Single-particle
Fitted PDBs: 9mu9
Q-score: 0.202
Similar entry percentile: 84%

Venette-Smith NL, Vishwakarma RK, Venkatakrishnan V, Dollinger R, Schultz J, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami KS

Nat Commun (2026) 17 [ Pubmed: 42711332 DOI: doi:10.1038/s41467-026-75963-0 ]

Sort by: Download
Showing 1 - 10 of 61. Page 1 of 7
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [61]

Current status

  • REL [61]

Sample type

  • Protein [58]
  • Complex [54]
  • Ligand [44]
  • DNA [19]
  • RNA [10]
  • Virus [5]
  • Cell [1]
  • Cellular component [1]

Organism

  • Homo sapiens [16]
  • Saccharomyces cerevisiae [10]
  • Mus musculus [4]
  • Escherichia coli [4]
  • Mesocricetus auratus [2]
  • Bacillus subtilis [2]
  • Adeno-associated virus [2]
  • Leishmania major [2]
  • Escherichia coli [2]
  • Saccharomyces cerevisiae [2]
  • Drosophila melanogaster [2]
  • Danio rerio [2]
  • Adeno-associated dependoparvovirus b [2]
  • Bos taurus [2]
  • Rattus norvegicus [1]
  • Human herpesvirus 1 [1]
  • Adeno-associated dependoparvovirus a [1]
  • Vesicular stomatitis virus [1]
  • Indiana vesiculovirus [1]
  • Synechocystis sp. pcc 6803 [1]
  • Human immunodeficiency virus 1 [1]
  • Human immunodeficiency virus 1 [1]
  • Spraguea lophii [1]
  • Adeno-associated dependoparvovirus a [1]
  • Prevotella copri [1]
  • Thermothielavioides terrestris [1]
  • Schistosoma mansoni [1]
  • Thermococcus kodakarensis [1]

EM Method

  • Single-particle [58]
  • Helical reconstruction [2]
  • Electron Crystallography [1]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [28]
  • ≥ 3Å and < 4Å [24]
  • ≥ 4Å and < 5Å [4]
  • ≥ 6Å and < 8Å [2]

Release Date

  • 2026 [7]
  • 2025 [7]
  • 2024 [5]
  • 2023 [5]
  • 2022 [13]
  • 2021 [3]
  • 2020 [12]
  • 2019 [2]
  • 2018 [4]
  • 2017 [3]

Author by name

  • Hite RK [11]
  • Castaneda JC [10]
  • Devbhandari S [10]
  • Kumar C [10]
  • Remus D [10]
  • Schrecker M [10]
  • Dhar A [5]
  • Nobe Y [5]
  • Pavletich NP [5]
  • Taoka M [5]
  • Naschberger A [4]
  • Aibara S [3]
  • Amunts A [3]
  • Andrell J [3]
  • Barrientos A [3]
  • Chapman MS [3]
  • Chen J [3]
  • Del Olio S [3]
  • Flygaard RK [3]
  • Hassan A [3]
  • Itoh Y [3]
  • Izumikawa K [3]
  • Peralta C [3]
  • Singh V [3]
  • Wang R [3]
  • Wang S [3]
  • Whitford PC [3]
  • Ambudkar SV [2]
  • Anand G [2]
  • Armache J-P [2]
  • Armache JP [2]
  • Aryal S [2]
  • Babitzke P [2]
  • Bashan A [2]
  • Bettler E [2]
  • Boo ZZ [2]
  • Camara-wilpert S [2]
  • Carabias A [2]
  • Carabias Del Rey A [2]
  • Chaptal V [2]
  • Chen L [2]
  • Clarke OB [2]
  • Cohen-chalamish S [2]
  • Ding D [2]
  • Dollinger R [2]
  • Doniger T [2]
  • Esser L [2]
  • Falson P [2]
  • Fuglsang A [2]
  • Gilmour DS [2]
  • Gobet A [2]
  • Gong Q [2]
  • Gottesman MM [2]
  • Grigorieff N [2]
  • Hagen WJH [2]
  • Hendriks IA [2]
  • Honzejkova K [2]
  • Hsieh CM [2]
  • Huang RK [2]
  • Jault JM [2]
  • Johnson ZL [2]
  • Kang Y [2]
  • Khatter H [2]
  • Kosek D [2]
  • Lang ZC [2]
  • Large EE [2]
  • Lopez-mendez B [2]
  • Luk SH [2]
  • Madmoni H [2]
  • Magnard S [2]
  • Martin J [2]
  • Mestre MR [2]
  • Michaeli S [2]
  • Moissonnier L [2]
  • Montoya G [2]
  • Morton AJ [2]
  • Muller CW [2]
  • Murakami KS [2]
  • Nielsen ML [2]
  • Obsil T [2]
  • Obsilova V [2]
  • Olami M [2]
  • Orelle C [2]
  • Pape T [2]
  • Pescher P [2]
  • Pinilla-redondo R [2]
  • Prina E [2]
  • Rajan KS [2]
  • Reversade B [2]
  • Robey R [2]
  • Schoehn G [2]
  • Schultz J [2]
  • Silveria M [2]
  • Silveria MA [2]
  • Spath GF [2]
  • Teo DET [2]
  • Terreux R [2]
  • Unger R [2]
  • Venette-smith NL [2]
  • Venkatakrishnan V [2]

Journal

  • NAT COMMUN [17]
  • ELIFE [12]
  • NATURE [7]
  • CELL [4]
  • CELL REP [4]
  • BIORXIV [3]
  • PNAS [3]
  • VIRUSES [3]
  • MOL CELL [2]
  • COMMUN BIOL [1]
  • COMMUN CHEM [1]
  • EMBO J [1]
  • J AM CHEM SOC [1]
  • J BIOL CHEM [1]
  • NAT MICROBIOL [1]
  • NAT STRUCT MOL BIOL [1]
  • STRUCTURE [1]
  • VIROLOGY [1]

Software

  • CRYOSPARC [24]
  • RELION [21]
  • FREALIGN [4]
  • CISTEM [1]
  • UCSF CHIMERAX [1]

Microscope

  • FEI TITAN KRIOS [40]
  • TFS KRIOS [11]
  • TFS TALOS [3]
  • FEI TALOS ARCTICA [2]
  • FEI POLARA 300 [1]
  • FEI TECNAI ARCTICA [1]
  • FEI TECNAI F20 [1]
  • FEI TITAN [1]
  • JEOL CRYO ARM 300 [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [61]

Film or detector model

  • GATAN K3 6K X 4K [21]
  • GATAN K2 SUMMIT 4K X 4K [20]
  • GATAN K3 BIOQUANTUM 6K X 4K [9]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • FEI FALCON III 4K X 4K [3]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • AlphaFold DB [51]
  • EMPIAR [14]