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Current Database

  • EMPIAR [16]

Current status

  • REL [16]

Release Date

  • 2025 [5]
  • 2024 [4]
  • 2023 [2]
  • 2022 [2]
  • 2021 [1]
  • 2020 [2]

Author by name

  • Dubach VRA [3]
  • Duinkerken BHP [3]
  • Giepmans BNG [3]
  • Hoogenboom JP [3]
  • Höppener T [3]
  • Kievits AJ [3]
  • Lane R [3]
  • Liv N [3]
  • Murphy BJ [3]
  • San Segundo-Acosta P [3]
  • Wolters AHG [3]
  • De Heus C [3]
  • Van Beijeren Bergen En Henegouwen D [3]
  • Hirst J [2]
  • Yin Z [2]
  • Bartenschlager R [1]
  • Beckwith MS [1]
  • Beumer J [1]
  • Blaza JN [1]
  • Boermel M [1]
  • Boulant S [1]
  • Breugem T [1]
  • Bridges HR [1]
  • Butcher SJ [1]
  • Bücker R [1]
  • Cerikan B [1]
  • Chatel-chaix L [1]
  • Chen S [1]
  • Chung I [1]
  • Clevers H [1]
  • Conn GL [1]
  • Cortese M [1]
  • Cuppen E [1]
  • Dey D [1]
  • Duimel HQ [1]
  • Dunham CM [1]
  • Fisher W [1]
  • Frankish J [1]
  • Grba DN [1]
  • Grohn S [1]
  • Gross V [1]
  • Haagmans B [1]
  • Hammerschmith EW [1]
  • Hankaniemi MM [1]
  • Hennies J [1]
  • Hogan-lamarre P [1]
  • Horvat NK [1]
  • Ishimoto N [1]
  • Iwamoto M [1]
  • Iwata S [1]
  • Jartti M [1]
  • Jin Z [1]
  • Knoops K [1]
  • Koopmans M [1]
  • Kuijpers HJH [1]
  • Köhrer S [1]
  • Laajala M [1]
  • Laketa V [1]
  • Lamers MM [1]
  • Lee JY [1]
  • Lee W [1]
  • Liu K [1]
  • Mao Y [1]
  • Marjomaki V [1]
  • Mattingly JM [1]
  • Mehrabi P [1]
  • Mizutani K [1]
  • Mizzon G [1]
  • Mocaer K [1]
  • Muramatsu M [1]
  • Mustonen I [1]
  • Mykytyn AZ [1]
  • Neufeldt CJ [1]
  • Nishizawa T [1]
  • Nomura N [1]
  • Ohki M [1]
  • Oikarinen S [1]
  • Oorschot VMJ [1]
  • Oshima M [1]
  • Pape C [1]
  • Park JH [1]
  • Park SY [1]
  • Peters PJ [1]
  • Plavec Z [1]
  • Pollak MN [1]
  • Puschhof J [1]
  • Ravelli RBG [1]
  • Riesebosch S [1]
  • Romero-brey I [1]
  • Ronchi P [1]
  • Ruggieri A [1]
  • Santarella-mellwig R [1]
  • Schieber NL [1]
  • Schipper D [1]
  • Schorb M [1]
  • Schulz EC [1]
  • Schwab Y [1]
  • Seung HS [1]
  • Shirouzu M [1]
  • Sodroski JG [1]

Journal

  • METHODS IN MICROSCOPY [3]
  • NAT STRUCT MOL BIOL [3]
  • SCIENCE [3]
  • BIORXIV [2]
  • METHODS MICROSC [2]
  • CELL HOST MICROBE [1]
  • ELIFE [1]
  • J VIROL [1]
  • MIM [1]
  • NAT COMMUN [1]
  • NATURE [1]
  • SCI REP [1]

EMPIAR Experiment type

  • EMDB [9]
  • ATUM-SEM [3]
  • EXCEPTION [1]
  • HARD X-RAY/X-RAY MICROCT [1]
  • IHM [1]
  • MICROED [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [8]
  • MICROGRAPHS - SINGLE FRAME [7]
  • DIFFRACTION IMAGES [1]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [1]
  • RECONSTRUCTED VOLUMES [1]
  • STITCHED MAPS [1]
  • TILT SERIES [1]

External links

  • EMDB [11]
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EMPIAR-13059
Related EMDB
EMD-50498 EMD-50497
Immunological and structural evaluation of the intranasally administrated CVB1 whole-virus and VLP vaccines
Release date: Dec. 7, 2025
Dataset size: 1.6 TB
Experiment type: EMDB

Soppela S, Plavec Z, Gröhn S, Mustonen I, Jartti M, Oikarinen S, Laajala M, Marjomäki V, Butcher SJ, Hankaniemi MM

Sci Rep (2025) 15 pp. 10198-10198 [ Pubmed: 40133550 DOI: 10.1038/s41598-025-94656-0 ]

Image sets:
  • CVB1 virus data
  • CVB1 VLP data
EMPIAR-12843
Related EMDB
EMD-44192
E. coli 70S ribosome complex (Unmethylated 16S A1408 + arbekacin)
Release date: Oct. 28, 2025
Dataset size: 1.5 TB
Experiment type: EMDB

Mattingly JM, Dey D, Zelinskaya N, Dunham CM, Conn GL

To Be Published

Image sets:
  • Aligned, single-frame micrographs of E. coli 70S ribosome complexes containing arbekacin (unmethylated 16S nucleotide A1408)
EMPIAR-11741
Related EMDB
EMD-18644
Cryo-EM SPA dataset of Streptococcus pneumoniae NADPH oxidase
Release date: Aug. 13, 2025
Dataset size: 6.9 TB
Experiment type: EMDB

Dubach VRA, San Segundo-Acosta P, Murphy BJ

Nat Struct Mol Biol (2024) [ Pubmed: 39039317 DOI: 10.1038/s41594-024-01348-w ]

Image sets:
  • Unaligned mutliframe non-gain-normalized EER movies of SpNOX collected on a Krios G4
EMPIAR-11742
Related EMDB
EMD-18645
Cryo-EM SPA dataset of Streptococcus pneumoniae NADPH oxidase with NADPH under turnover conditions
Release date: July 10, 2025
Dataset size: 9.4 TB
Experiment type: EMDB

Dubach VRA, San Segundo-Acosta P, Murphy BJ

Nat Struct Mol Biol (2024) [ Pubmed: 39039317 DOI: 10.1038/s41594-024-01348-w ]

Image sets:
  • Unaligned mutliframe non-gain-normalized EER movies of SpNOX with NADPH collected on a Krios G4
EMPIAR-11743
Related EMDB
EMD-18646
Cryo-EM SPA dataset of stably reduced Streptococcus pneumoniae NADPH oxidase with NADH
Release date: June 26, 2025
Dataset size: 11.1 TB
Experiment type: EMDB

Dubach VRA, San Segundo-Acosta P, Murphy BJ

Nat Struct Mol Biol (2024) [ Pubmed: 39039317 DOI: 10.1038/s41594-024-01348-w ]

Image sets:
  • Unaligned mutliframe non-gain-normalized EER movies of SpNOX collected on a Krios G4
EMPIAR-12193
FAST-EM array tomography data of rat pancreas prepared with rOTO protocol and stained with neodymium acetate
Release date: Nov. 19, 2024
Dataset size: 479.6 GB
Experiment type: ATUM-SEM

Kievits AJ, Duinkerken BHP, Lane R, de Heus C, van Beijeren Bergen En Henegouwen D, Höppener T, Wolters AHG, Liv N, Giepmans BNG, Hoogenboom JP

Methods in microscopy (2024) 1 pp. 49-64 [ DOI: 10.1515/mim-2024-0005 Pubmed: 39119255 ]

Image sets:
  • Raw FAST-EM array tomography electron micrographs from wild-type MCF-7 cells stained with rOTO protocol and neodymium acetate
EMPIAR-12190
FAST-EM array tomography data of wild-type MCF-7 cells prepared with the rOTO protocol and stained with uranyl acetate
Release date: Sept. 23, 2024
Dataset size: 561.3 GB
Experiment type: ATUM-SEM

Kievits AJ, Duinkerken BHP, Lane R, de Heus C, van Beijeren Bergen en Henegouwen D, Höppener T, Wolters AHG, Liv N, Giepmans BNG, Hoogenboom JP

Methods in Microscopy ()

Image sets:
  • Raw FAST-EM array tomography electron micrographs from wild-type MCF-7 cells stained with rOTO protocol and uranyl acetate
EMPIAR-12174
FAST-EM array tomography data of rat pancreas prepared with rOTO protocol and stained with neodymium acetate
Release date: Aug. 29, 2024
Dataset size: 69.7 GB
Experiment type: ATUM-SEM

Kievits AJ, Duinkerken BHP, Lane R, de Heus C, van Beijeren Bergen En Henegouwen D, Höppener T, Wolters AHG, Liv N, Giepmans BNG, Hoogenboom JP

Methods in microscopy (2024) 1 pp. 49-64 [ DOI: 10.1515/mim-2024-0005 Pubmed: 39119255 ]

Image sets:
  • Raw FAST-EM array tomography electron micrographs from rat pancreas tissue with rOTO staining and neodymium acetate
EMPIAR-11678
Related EMDB
EMD-18141 EMD-18138 EMD-18139 EMD-18142 EMD-18140 EMD-18143
Single particle cryo-EM dataset of as-prepared Bos taurus mitochondrial complex I (originally purified in LMNG) proteoliposomes
Release date: July 3, 2024
Dataset size: 5.6 TB
Experiment type: EMDB

Grba DN, Wright JJ, Fisher W, Yin Z, Hirst J

Science (2024) 384 pp. 1247-1253 [ DOI: 10.1126/science.ado2075 Pubmed: 38870289 ]

Image sets:
  • Unaligned multi-frame micrographs of wild-type, as-prepared, bos taurus mitochondrial complex I, solubilised in LMNG, reconstituted into proteoliposomes.
EMPIAR-10782
In situ X-ray assisted electron microscopy staining for large biological samples
Release date: June 30, 2023
Dataset size: 981.6 GB
Experiment type: Hard X-ray/X-ray microCT

Ströh S, Hammerschmith EW, Tank DW, Seung HS, Wanner AA

Elife (2022) 11 [ DOI: 10.7554/elife.72147 Pubmed: 36263931 ]

Image sets:
  • microCT raw data of X-ray assisted staining
Sort by: Download
Showing 1 - 10 of 16. Page 1 of 2
Display:
Statistics
×

Download










































Preview first 10
Download

Filter By

Current Database

  • EMPIAR [16]

Current status

  • REL [16]

Release Date

  • 2025 [5]
  • 2024 [4]
  • 2023 [2]
  • 2022 [2]
  • 2021 [1]
  • 2020 [2]

Author by name

  • Dubach VRA [3]
  • Duinkerken BHP [3]
  • Giepmans BNG [3]
  • Hoogenboom JP [3]
  • Höppener T [3]
  • Kievits AJ [3]
  • Lane R [3]
  • Liv N [3]
  • Murphy BJ [3]
  • San Segundo-Acosta P [3]
  • Wolters AHG [3]
  • De Heus C [3]
  • Van Beijeren Bergen En Henegouwen D [3]
  • Hirst J [2]
  • Yin Z [2]
  • Bartenschlager R [1]
  • Beckwith MS [1]
  • Beumer J [1]
  • Blaza JN [1]
  • Boermel M [1]
  • Boulant S [1]
  • Breugem T [1]
  • Bridges HR [1]
  • Butcher SJ [1]
  • Bücker R [1]
  • Cerikan B [1]
  • Chatel-chaix L [1]
  • Chen S [1]
  • Chung I [1]
  • Clevers H [1]
  • Conn GL [1]
  • Cortese M [1]
  • Cuppen E [1]
  • Dey D [1]
  • Duimel HQ [1]
  • Dunham CM [1]
  • Fisher W [1]
  • Frankish J [1]
  • Grba DN [1]
  • Grohn S [1]
  • Gross V [1]
  • Haagmans B [1]
  • Hammerschmith EW [1]
  • Hankaniemi MM [1]
  • Hennies J [1]
  • Hogan-lamarre P [1]
  • Horvat NK [1]
  • Ishimoto N [1]
  • Iwamoto M [1]
  • Iwata S [1]
  • Jartti M [1]
  • Jin Z [1]
  • Knoops K [1]
  • Koopmans M [1]
  • Kuijpers HJH [1]
  • Köhrer S [1]
  • Laajala M [1]
  • Laketa V [1]
  • Lamers MM [1]
  • Lee JY [1]
  • Lee W [1]
  • Liu K [1]
  • Mao Y [1]
  • Marjomaki V [1]
  • Mattingly JM [1]
  • Mehrabi P [1]
  • Mizutani K [1]
  • Mizzon G [1]
  • Mocaer K [1]
  • Muramatsu M [1]
  • Mustonen I [1]
  • Mykytyn AZ [1]
  • Neufeldt CJ [1]
  • Nishizawa T [1]
  • Nomura N [1]
  • Ohki M [1]
  • Oikarinen S [1]
  • Oorschot VMJ [1]
  • Oshima M [1]
  • Pape C [1]
  • Park JH [1]
  • Park SY [1]
  • Peters PJ [1]
  • Plavec Z [1]
  • Pollak MN [1]
  • Puschhof J [1]
  • Ravelli RBG [1]
  • Riesebosch S [1]
  • Romero-brey I [1]
  • Ronchi P [1]
  • Ruggieri A [1]
  • Santarella-mellwig R [1]
  • Schieber NL [1]
  • Schipper D [1]
  • Schorb M [1]
  • Schulz EC [1]
  • Schwab Y [1]
  • Seung HS [1]
  • Shirouzu M [1]
  • Sodroski JG [1]

Journal

  • METHODS IN MICROSCOPY [3]
  • NAT STRUCT MOL BIOL [3]
  • SCIENCE [3]
  • BIORXIV [2]
  • METHODS MICROSC [2]
  • CELL HOST MICROBE [1]
  • ELIFE [1]
  • J VIROL [1]
  • MIM [1]
  • NAT COMMUN [1]
  • NATURE [1]
  • SCI REP [1]

EMPIAR Experiment type

  • EMDB [9]
  • ATUM-SEM [3]
  • EXCEPTION [1]
  • HARD X-RAY/X-RAY MICROCT [1]
  • IHM [1]
  • MICROED [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [8]
  • MICROGRAPHS - SINGLE FRAME [7]
  • DIFFRACTION IMAGES [1]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [1]
  • RECONSTRUCTED VOLUMES [1]
  • STITCHED MAPS [1]
  • TILT SERIES [1]

External links

  • EMDB [11]