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Filter By

Current Database

  • EMDB [62]
  • EMPIAR [1]

Current status

  • REL [63]

Sample type

  • Sample [50]
  • Protein [47]
  • Complex [29]
  • RNA [14]
  • Virus [7]
  • Ligand [4]
  • Cellular component [2]
  • DNA [1]
  • Other [1]

Organism

  • Saccharomyces cerevisiae [16]
  • Homo sapiens [12]
  • Escherichia coli [11]
  • Bacillus sp. (strain ps3) [8]
  • Oryctolagus cuniculus [8]
  • Enterovirus b [4]
  • Thermomyces lanuginosus [4]
  • Rattus norvegicus [2]
  • Ross river virus [2]
  • Pestivirus c [2]
  • Meiothermus taiwanensis [2]
  • Chaetomium thermophilum [2]
  • Photorhabdus heterorhabditis [2]
  • Sindbis virus [1]
  • Respiratory syncytial virus [1]
  • Synthetic construct [1]
  • Trypanosoma brucei [1]

EM Method

  • Single-particle [55]
  • Helical reconstruction [5]
  • Subtomogram averaging [2]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [12]
  • ≥ 4Å and < 5Å [6]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [5]
  • ≥ 8Å and < 12Å [12]
  • ≥ 12Å and < 16Å [8]
  • ≥ 16Å and < 20Å [9]
  • ≥ 20Å and < 30Å [6]
  • ≥ 30Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 250-500 kDa [1]
  • 500-1000 kDa [2]
  • 2-5 MDa [1]
  • 5-10 MDa [1]

Release Date

  • 2024 [4]
  • 2023 [8]
  • 2021 [1]
  • 2016 [5]
  • 2015 [11]
  • 2014 [15]
  • 2013 [5]
  • 2012 [3]
  • 2011 [1]
  • 2009 [2]
  • 2007 [4]
  • 2005 [2]
  • 2003 [2]

Author by name

  • Frank J [14]
  • Hashem Y [9]
  • Kishikawa J [8]
  • Kishikawa JI [8]
  • Mitsuoka K [8]
  • Nakano A [8]
  • Yokoyama K [8]
  • Boel G [6]
  • Chen B [6]
  • Fei J [6]
  • Gonzalez Jr Rl [6]
  • Gonzalez RL [6]
  • Goodman BS [6]
  • Hunt JF [6]
  • Leschziner AE [6]
  • Ning W [6]
  • Reck-peterson SL [6]
  • Redwine WB [6]
  • Roberts AJ [6]
  • Toropova K [6]
  • Wang C [6]
  • Zou S [6]
  • Bhella D [5]
  • Glatt S [5]
  • Hoffmann NA [5]
  • Andersen GR [4]
  • Bohringer N [4]
  • Calabrese AN [4]
  • Crossley JA [4]
  • Evans DJ [4]
  • Fenn KL [4]
  • Grassucci RA [4]
  • Horne JE [4]
  • Horne RJ [4]
  • Lea SM [4]
  • Merrill AR [4]
  • Nilsson J [4]
  • Nissen P [4]
  • Radford SE [4]
  • Ranson NA [4]
  • Schaberle TF [4]
  • Taylor DJ [4]
  • Des Georges A [4]
  • Brown A [3]
  • Ge P [3]
  • Gil D [3]
  • Hagen WJ [3]
  • Hegde RS [3]
  • Jakobi AJ [3]
  • Kosinski J [3]
  • Liao HY [3]
  • Llorca O [3]
  • Moreno-morcillo M [3]
  • Muller CW [3]
  • Murray J [3]
  • Ramakrishnan V [3]
  • Sachse C [3]
  • Shao S [3]
  • Zhou ZH [3]
  • Asano S [2]
  • Aufderheide A [2]
  • Babu CS [2]
  • Baumeister W [2]
  • Beck F [2]
  • Beck M [2]
  • Bork P [2]
  • Chang CI [2]
  • Chang MY [2]
  • Chang YC [2]
  • Chaudhry Y [2]
  • Chen C [2]
  • Danev R [2]
  • Dauden MI [2]
  • Durer ZAO [2]
  • Foerster F [2]
  • Fukuda Y [2]
  • Goodfellow IG [2]
  • Hellen CUT [2]
  • Ho MR [2]
  • Kastritis P [2]
  • Kerrigan D [2]
  • Kudryashov D [2]
  • Langlois R [2]
  • Liao JH [2]
  • Lim C [2]
  • Lopez-perrote A [2]
  • Mueller CW [2]
  • Mukhopadhyay S [2]
  • Munoz-hernandez H [2]
  • Pestova TV [2]
  • Pettigrew D [2]
  • Pettigrew DM [2]
  • Rayaprolu V [2]
  • Reisler E [2]
  • Roversi P [2]
  • Silva-martin N [2]
  • Su SC [2]
  • Tai HC [2]
  • Wang J C-Y [2]
  • Wang JC [2]

Author by ORCID

  • Sachse C [2]
  • Glatt S [2]
  • Hoffmann NA [2]
  • Muller CW [2]
  • Hagen WJ [2]
  • Jakobi AJ [2]
  • Kosinski J [2]
  • Moreno-morcillo M [2]
  • Horne JE [1]
  • Hegde RS [1]
  • Lea SM [1]
  • Horne RJ [1]
  • Schaberle TF [1]
  • Brown A [1]
  • Evans DJ [1]
  • Radford SE [1]
  • Ranson NA [1]
  • Ramakrishnan V [1]
  • Crossley JA [1]
  • Williams DT [1]
  • Murray J [1]
  • Fenn KL [1]
  • Nissen P [1]
  • Bhella D [1]
  • Calabrese AN [1]
  • Shao S [1]
  • Nilsson J [1]

Journal

  • NAT COMMUN [12]
  • NATURE [11]
  • NAT STRUCT MOL BIOL [9]
  • ELIFE [6]
  • EMBO J [4]
  • J BIOL CHEM [4]
  • SCIENCE [4]
  • STRUCTURE [4]
  • ACS NANO [2]
  • NUCLEIC ACIDS RES [2]
  • PLOS ONE [2]
  • PNAS [2]
  • MOL CELL [1]

Software

  • RELION [22]
  • CHIMERA [10]
  • CRYOSPARC [8]
  • SPIDER, RELION [8]
  • CHIMERA, COOT [4]
  • RSREF2.0 [4]
  • SPIDER PACKAGE [4]
  • AUTO3DEM [3]
  • CTFFIND3, RELION [3]
  • UCSF CHIMERAX [3]
  • EM3DR2, PFT2, CTFMIX [2]
  • EMAN1.9, EMAN2, XMIPP, BSOFT [2]
  • EMAN2 [2]
  • ETOMO, TOM, PYTOM [2]
  • PFT2 AND EM3DR2 [2]
  • RELION, EMAN, XMIPP, SPIDER [2]
  • RELION, IHRSR [2]
  • CHIMERA, PHENIX, COOT [1]
  • COLORES [1]
  • EMAN, XMIPP, SPIDER, BSOFT [1]
  • IHRSR, EMAN [1]
  • MRC, SUPRIM, PHOELIX, OTHER [1]
  • NAMD [1]
  • RELION, EMAN2 [1]
  • SIMPLE [1]
  • SPIDER [1]
  • SPIDER, HELICALS, HELICALI [1]

Microscope

  • FEI TITAN KRIOS [24]
  • FEI TECNAI F20 [13]
  • FEI TECNAI 20 [6]
  • FEI TECNAI F30 [5]
  • JEOL 1200EXII [3]
  • JEOL 2200FS [3]
  • FEI POLARA 300 [2]
  • JEOL 1200 [2]
  • JEOL 3200FS [2]
  • TFS KRIOS [2]
  • OTHER [1]

Electron Source

  • FIELD EMISSION GUN [57]
  • LAB6 [6]

Film or detector model

  • GATAN ULTRASCAN 4000 4K X 4K [24]
  • KODAK SO-163 FILM [12]
  • FEI FALCON II 4K X 4K [10]
  • GATAN K3 BIOQUANTUM 6K X 4K [8]
  • FEI FALCON IV 4K X 4K [4]
  • GATAN K2 4K X 4K [3]
  • GENERIC GATAN 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]
  • MICROGRAPHS - SINGLE FRAME [1]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [1]

External links

  • PDB [6]
  • AlphaFold DB [4]
  • PDBe-Kb [4]
  • UniProt [4]
  • ChEBI [1]
  • ChEMBL [1]
  • Complex Portal [1]
  • DrugBank [1]
  • EMDB [1]
  • EMPIAR [1]
  • Gene Ontology [1]
  • InterPro [1]
  • Pfam [1]
Sort by: Download
Showing 1 - 10 of 63. Page 1 of 7
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Preview first 10
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EMD-18034
Download Map
3D View
Raw data
EMPIAR-12197
Wait Complex: Lateral open BAM bound Compact SurA
CryoEM
Release date: Sept. 25, 2024
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8pz1
Q-score: 0.449

Fenn KL, Horne JE, Crossley JA, Bohringer N, Horne RJ, Schaberle TF, Calabrese AN, Radford SE, Ranson NA

Nat Commun (2024) 15 pp. 7612-7612 [ Pubmed: 39218969 DOI: doi:10.1038/s41467-024-51358-x ]

EMD-18035
Download Map
3D View
Raw data
EMPIAR-12197
Wait Complex: Lateral open BAM bound Extended SurA
CryoEM
Release date: Sept. 25, 2024
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8pz2
Q-score: 0.46

Fenn KL, Horne JE, Crossley JA, Bohringer N, Horne RJ, Schaberle TF, Calabrese AN, Radford SE, Ranson NA

Nat Commun (2024) 15 pp. 7612-7612 [ Pubmed: 39218969 DOI: doi:10.1038/s41467-024-51358-x ]

EMD-18045
Download Map
3D View
Raw data
EMPIAR-11933
Wait Complex: BAM bound Darobactin-B and Compact SurA
CryoEM
Release date: Sept. 25, 2024
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8pzu
Q-score: 0.437

Fenn KL, Horne JE, Crossley JA, Bohringer N, Horne RJ, Schaberle TF, Calabrese AN, Radford SE, Ranson NA

Nat Commun (2024) 15 pp. 7612-7612 [ Pubmed: 39218969 DOI: doi:10.1038/s41467-024-51358-x ]

EMD-18046
Download Map
3D View
Raw data
EMPIAR-11933
Wait Complex: BAM bound Darobactin-B and Extended SurA
CryoEM
Release date: Sept. 25, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8pzv
Q-score: 0.548

Fenn KL, Horne JE, Crossley JA, Bohringer N, Horne RJ, Schaberle TF, Calabrese AN, Radford SE, Ranson NA

Nat Commun (2024) 15 pp. 7612-7612 [ Pubmed: 39218969 DOI: doi:10.1038/s41467-024-51358-x ]

EMD-34753
Download Map
3D View
F1 domain of FoF1-ATPase from Bacillus PS3,step waiting,highATP
CryoEM
Release date: July 26, 2023
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8hh6
Q-score: 0.551

Nakano A, Kishikawa JI, Mitsuoka K, Yokoyama K

Nat Commun (2023) 14 pp. 4090-4090 [ DOI: doi:10.1038/s41467-023-39742-5 Pubmed: 37429854 ]

EMD-34774
Download Map
3D View
FoF1-ATPase from Bacillus PS3,step waiting, state1,highATP
CryoEM
Release date: July 26, 2023
Resolution: 3.3 Å
EM Method: Single-particle

Nakano A, Kishikawa JI, Mitsuoka K, Yokoyama K

Nat Commun (2023) 14 pp. 4090-4090 [ DOI: doi:10.1038/s41467-023-39742-5 Pubmed: 37429854 ]

EMD-34775
Download Map
3D View
FoF1-ATPase from Bacillus PS3,step waiting,state2,highATP
CryoEM
Release date: July 26, 2023
Resolution: 3.8 Å
EM Method: Single-particle

Nakano A, Kishikawa JI, Mitsuoka K, Yokoyama K

Nat Commun (2023) 14 pp. 4090-4090 [ DOI: doi:10.1038/s41467-023-39742-5 Pubmed: 37429854 ]

EMD-34776
Download Map
3D View
FoF1-ATPase from Bacillus PS3,step waiting,state3,highATP
CryoEM
Release date: July 26, 2023
Resolution: 3.6 Å
EM Method: Single-particle

Nakano A, Kishikawa JI, Mitsuoka K, Yokoyama K

Nat Commun (2023) 14 pp. 4090-4090 [ DOI: doi:10.1038/s41467-023-39742-5 Pubmed: 37429854 ]

EMD-34789
Download Map
3D View
FoF1-ATPase from Bacillus PS3,step waiting,state2,lowATP
CryoEM
Release date: July 26, 2023
Resolution: 4.2 Å
EM Method: Single-particle

Nakano A, Kishikawa JI, Mitsuoka K, Yokoyama K

Nat Commun (2023) 14 pp. 4090-4090 [ DOI: doi:10.1038/s41467-023-39742-5 Pubmed: 37429854 ]

EMD-34758
Download Map
3D View
F1 domain of FoF1-ATPase from Bacillus PS3,step waiting,lowATP
CryoEM
Release date: July 19, 2023
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8hhb
Q-score: 0.521

Nakano A, Kishikawa JI, Mitsuoka K, Yokoyama K

Nat Commun (2023) 14 pp. 4090-4090 [ DOI: doi:10.1038/s41467-023-39742-5 Pubmed: 37429854 ]

Sort by: Download
Showing 1 - 10 of 63. Page 1 of 7
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [62]
  • EMPIAR [1]

Current status

  • REL [63]

Sample type

  • Sample [50]
  • Protein [47]
  • Complex [29]
  • RNA [14]
  • Virus [7]
  • Ligand [4]
  • Cellular component [2]
  • DNA [1]
  • Other [1]

Organism

  • Saccharomyces cerevisiae [16]
  • Homo sapiens [12]
  • Escherichia coli [11]
  • Bacillus sp. (strain ps3) [8]
  • Oryctolagus cuniculus [8]
  • Enterovirus b [4]
  • Thermomyces lanuginosus [4]
  • Rattus norvegicus [2]
  • Ross river virus [2]
  • Pestivirus c [2]
  • Meiothermus taiwanensis [2]
  • Chaetomium thermophilum [2]
  • Photorhabdus heterorhabditis [2]
  • Sindbis virus [1]
  • Respiratory syncytial virus [1]
  • Synthetic construct [1]
  • Trypanosoma brucei [1]

EM Method

  • Single-particle [55]
  • Helical reconstruction [5]
  • Subtomogram averaging [2]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [12]
  • ≥ 4Å and < 5Å [6]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [5]
  • ≥ 8Å and < 12Å [12]
  • ≥ 12Å and < 16Å [8]
  • ≥ 16Å and < 20Å [9]
  • ≥ 20Å and < 30Å [6]
  • ≥ 30Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 250-500 kDa [1]
  • 500-1000 kDa [2]
  • 2-5 MDa [1]
  • 5-10 MDa [1]

Release Date

  • 2024 [4]
  • 2023 [8]
  • 2021 [1]
  • 2016 [5]
  • 2015 [11]
  • 2014 [15]
  • 2013 [5]
  • 2012 [3]
  • 2011 [1]
  • 2009 [2]
  • 2007 [4]
  • 2005 [2]
  • 2003 [2]

Author by name

  • Frank J [14]
  • Hashem Y [9]
  • Kishikawa J [8]
  • Kishikawa JI [8]
  • Mitsuoka K [8]
  • Nakano A [8]
  • Yokoyama K [8]
  • Boel G [6]
  • Chen B [6]
  • Fei J [6]
  • Gonzalez Jr Rl [6]
  • Gonzalez RL [6]
  • Goodman BS [6]
  • Hunt JF [6]
  • Leschziner AE [6]
  • Ning W [6]
  • Reck-peterson SL [6]
  • Redwine WB [6]
  • Roberts AJ [6]
  • Toropova K [6]
  • Wang C [6]
  • Zou S [6]
  • Bhella D [5]
  • Glatt S [5]
  • Hoffmann NA [5]
  • Andersen GR [4]
  • Bohringer N [4]
  • Calabrese AN [4]
  • Crossley JA [4]
  • Evans DJ [4]
  • Fenn KL [4]
  • Grassucci RA [4]
  • Horne JE [4]
  • Horne RJ [4]
  • Lea SM [4]
  • Merrill AR [4]
  • Nilsson J [4]
  • Nissen P [4]
  • Radford SE [4]
  • Ranson NA [4]
  • Schaberle TF [4]
  • Taylor DJ [4]
  • Des Georges A [4]
  • Brown A [3]
  • Ge P [3]
  • Gil D [3]
  • Hagen WJ [3]
  • Hegde RS [3]
  • Jakobi AJ [3]
  • Kosinski J [3]
  • Liao HY [3]
  • Llorca O [3]
  • Moreno-morcillo M [3]
  • Muller CW [3]
  • Murray J [3]
  • Ramakrishnan V [3]
  • Sachse C [3]
  • Shao S [3]
  • Zhou ZH [3]
  • Asano S [2]
  • Aufderheide A [2]
  • Babu CS [2]
  • Baumeister W [2]
  • Beck F [2]
  • Beck M [2]
  • Bork P [2]
  • Chang CI [2]
  • Chang MY [2]
  • Chang YC [2]
  • Chaudhry Y [2]
  • Chen C [2]
  • Danev R [2]
  • Dauden MI [2]
  • Durer ZAO [2]
  • Foerster F [2]
  • Fukuda Y [2]
  • Goodfellow IG [2]
  • Hellen CUT [2]
  • Ho MR [2]
  • Kastritis P [2]
  • Kerrigan D [2]
  • Kudryashov D [2]
  • Langlois R [2]
  • Liao JH [2]
  • Lim C [2]
  • Lopez-perrote A [2]
  • Mueller CW [2]
  • Mukhopadhyay S [2]
  • Munoz-hernandez H [2]
  • Pestova TV [2]
  • Pettigrew D [2]
  • Pettigrew DM [2]
  • Rayaprolu V [2]
  • Reisler E [2]
  • Roversi P [2]
  • Silva-martin N [2]
  • Su SC [2]
  • Tai HC [2]
  • Wang J C-Y [2]
  • Wang JC [2]

Author by ORCID

  • Sachse C [2]
  • Glatt S [2]
  • Hoffmann NA [2]
  • Muller CW [2]
  • Hagen WJ [2]
  • Jakobi AJ [2]
  • Kosinski J [2]
  • Moreno-morcillo M [2]
  • Horne JE [1]
  • Hegde RS [1]
  • Lea SM [1]
  • Horne RJ [1]
  • Schaberle TF [1]
  • Brown A [1]
  • Evans DJ [1]
  • Radford SE [1]
  • Ranson NA [1]
  • Ramakrishnan V [1]
  • Crossley JA [1]
  • Williams DT [1]
  • Murray J [1]
  • Fenn KL [1]
  • Nissen P [1]
  • Bhella D [1]
  • Calabrese AN [1]
  • Shao S [1]
  • Nilsson J [1]

Journal

  • NAT COMMUN [12]
  • NATURE [11]
  • NAT STRUCT MOL BIOL [9]
  • ELIFE [6]
  • EMBO J [4]
  • J BIOL CHEM [4]
  • SCIENCE [4]
  • STRUCTURE [4]
  • ACS NANO [2]
  • NUCLEIC ACIDS RES [2]
  • PLOS ONE [2]
  • PNAS [2]
  • MOL CELL [1]

Software

  • RELION [22]
  • CHIMERA [10]
  • CRYOSPARC [8]
  • SPIDER, RELION [8]
  • CHIMERA, COOT [4]
  • RSREF2.0 [4]
  • SPIDER PACKAGE [4]
  • AUTO3DEM [3]
  • CTFFIND3, RELION [3]
  • UCSF CHIMERAX [3]
  • EM3DR2, PFT2, CTFMIX [2]
  • EMAN1.9, EMAN2, XMIPP, BSOFT [2]
  • EMAN2 [2]
  • ETOMO, TOM, PYTOM [2]
  • PFT2 AND EM3DR2 [2]
  • RELION, EMAN, XMIPP, SPIDER [2]
  • RELION, IHRSR [2]
  • CHIMERA, PHENIX, COOT [1]
  • COLORES [1]
  • EMAN, XMIPP, SPIDER, BSOFT [1]
  • IHRSR, EMAN [1]
  • MRC, SUPRIM, PHOELIX, OTHER [1]
  • NAMD [1]
  • RELION, EMAN2 [1]
  • SIMPLE [1]
  • SPIDER [1]
  • SPIDER, HELICALS, HELICALI [1]

Microscope

  • FEI TITAN KRIOS [24]
  • FEI TECNAI F20 [13]
  • FEI TECNAI 20 [6]
  • FEI TECNAI F30 [5]
  • JEOL 1200EXII [3]
  • JEOL 2200FS [3]
  • FEI POLARA 300 [2]
  • JEOL 1200 [2]
  • JEOL 3200FS [2]
  • TFS KRIOS [2]
  • OTHER [1]

Electron Source

  • FIELD EMISSION GUN [57]
  • LAB6 [6]

Film or detector model

  • GATAN ULTRASCAN 4000 4K X 4K [24]
  • KODAK SO-163 FILM [12]
  • FEI FALCON II 4K X 4K [10]
  • GATAN K3 BIOQUANTUM 6K X 4K [8]
  • FEI FALCON IV 4K X 4K [4]
  • GATAN K2 4K X 4K [3]
  • GENERIC GATAN 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]
  • MICROGRAPHS - SINGLE FRAME [1]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [1]

External links

  • PDB [6]
  • AlphaFold DB [4]
  • PDBe-Kb [4]
  • UniProt [4]
  • ChEBI [1]
  • ChEMBL [1]
  • Complex Portal [1]
  • DrugBank [1]
  • EMDB [1]
  • EMPIAR [1]
  • Gene Ontology [1]
  • InterPro [1]
  • Pfam [1]