Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
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VIRION
Filter By
Current Database
- EMDB [4880]
- EMPIAR [13]
Current status
- REL [4893]
Sample type
- Protein [3292]
- Virus [3007]
- Complex [1895]
- Ligand [1708]
- Sample [643]
- RNA [150]
- Cellular component [91]
- DNA [48]
- Other [17]
- Cell [14]
- Tissue [2]
Organism
- Severe acute respiratory syndrome coronavirus [1242]
- Homo sapiens [963]
- Mus musculus [179]
- Human immunodeficiency virus 1 [101]
- Synthetic construct [62]
- Escherichia virus t7 [58]
- Escherichia coli [53]
- Enterovirus d [48]
- Staphylococcus phage 812 [44]
- Adeno-associated virus [43]
- Enterovirus a [38]
- Influenza a virus [37]
- Human coronavirus hku1 [37]
- Severe acute respiratory syndrome coronavirus [35]
- Human cytomegalovirus [34]
- Enterovirus a [33]
- Cypovirus 1 [32]
- Mycolicibacterium smegmatis [32]
- Vicugna pacos [32]
- Chikungunya virus [32]
- Paramecium bursaria chlorella virus 1 [31]
- Enterovirus b [31]
- Enterovirus c [31]
- Brome mosaic virus [30]
- Mycobacterium phage bxb1 [30]
- Zika virus [30]
- Lama glama [29]
- Pseudomonas phage phi6 [26]
- Enterobacteria phage t4 [24]
- Pseudomonas phage jbd30 [24]
- Human cytomegalovirus [23]
- Salmonella phage p22 [23]
- Human herpesvirus 1 [22]
- Tobacco mosaic virus [22]
- Human mastadenovirus c [22]
- Eastern equine encephalitis virus [21]
- Tequintavirus dt57c [21]
- Enquatrovirus n4 [21]
- Suid alphaherpesvirus 1 [20]
- Human herpesvirus 8 [19]
- Rift valley fever phlebovirus [18]
- Influenza a virus [18]
- Influenza b virus [18]
- Norwalk virus [18]
- Rotavirus a [18]
- Hepatitis b virus [17]
- Orthoflavivirus flavi [17]
- Escherichia phage ms2 [17]
- Enterovirus b [17]
- Zaire ebolavirus [17]
- Enterovirus a [17]
- Western equine encephalitis virus [16]
- Deformed wing virus [16]
- Staphylococcus phage p68 [16]
- Escherichia phage lambda [16]
- Felixounavirus johannrwettstein [16]
- Salmonella phage p22 [16]
- Monkeypox virus [15]
- Vaccinia virus [15]
- Human herpesvirus 3 [15]
- Epstein-barr virus (strain gd1) [15]
- Mammalian orthoreovirus [15]
- Avian infectious bursal disease virus [15]
- Enterovirus b [15]
- Rotavirus a [15]
- Bacillus phage phi29 [14]
- Dengue virus [14]
- Indiana vesiculovirus [14]
- Zaire ebolavirus [14]
- Nipah virus [14]
- Autographa californica multiple nucleopolyhedrovirus [14]
- Alphabaculovirus aucalifornicae [14]
- Escherichia coli [14]
- Vaccinia virus [13]
- Pseudomonas virus prd1 [13]
- Certrevirus phite [13]
- Influenza b virus [13]
- Lassa mammarenavirus [13]
- Rhinovirus b [13]
- Middle east respiratory syndrome-related coronavirus [13]
- Middle east respiratory syndrome-related coronavirus [13]
- Escherichia virus su10 [13]
- Eastern chimpanzee simian foamy virus [13]
- Severe acute respiratory syndrome coronavirus [13]
- Enterovirus b [13]
- Enterovirus a [13]
- Epstein-barr virus (strain gd1) [12]
- Alphapapillomavirus 9 [12]
- Adeno-associated dependoparvovirus a [12]
- Bluetongue virus [12]
- Measles morbillivirus [12]
- Sulfolobus monocaudavirus smv1 [12]
- Escherichia virus qbeta [12]
- Human coronavirus hku1 [12]
- Human herpesvirus 1 [11]
- African swine fever virus [11]
- Venezuelan equine encephalitis virus [11]
- Machupo virus [11]
- Simian immunodeficiency virus [11]
- Enterovirus b [11]
EM Method
- Single-particle [4279]
- Subtomogram averaging [383]
- Tomography [118]
- Helical reconstruction [98]
- Electron Crystallography [2]
Resolution
- < 2Å [20]
- ≥ 2Å and < 3Å [819]
- ≥ 3Å and < 4Å [2055]
- ≥ 4Å and < 5Å [509]
- ≥ 5Å and < 6Å [98]
- ≥ 6Å and < 8Å [245]
- ≥ 8Å and < 12Å [364]
- ≥ 12Å and < 16Å [169]
- ≥ 16Å and < 20Å [112]
- ≥ 20Å and < 30Å [202]
- ≥ 30Å [126]
Model molecular weight
- 0-50 kDa [26]
- 50-100 kDa [60]
- 100-250 kDa [405]
- 250-500 kDa [1078]
- 500-1000 kDa [613]
- 1-2 MDa [155]
- 2-5 MDa [252]
- 5-10 MDa [357]
- > 10 MDa [321]
Release Date
- 2025 [571]
- 2024 [735]
- 2023 [642]
- 2022 [682]
- 2021 [551]
- 2020 [446]
- 2019 [265]
- 2018 [170]
- 2017 [119]
- 2016 [130]
- 2015 [73]
- 2014 [70]
- 2013 [109]
- 2012 [71]
- 2011 [36]
- 2010 [47]
- 2009 [64]
- 2008 [15]
- 2007 [40]
- 2006 [21]
- 2005 [22]
- 2004 [4]
- 2003 [4]
- 2002 [6]
Author by name
- Wang X [312]
- Wang Y [290]
- Zhou ZH [257]
- Zhang Y [243]
- Li Z [230]
- Zhang X [217]
- Zhang J [202]
- Plevka P [192]
- Rossmann MG [182]
- Li S [173]
- Wang P [171]
- Liu Y [169]
- Chen Z [162]
- Wang J [161]
- Li Y [152]
- Liu H [152]
- Fuzik T [149]
- Liu C [138]
- Wang L [136]
- Huang Y [125]
- Yu H [125]
- Liu Z [123]
- Liu J [122]
- Gao Y [120]
- Liu S [118]
- Zhang Z [117]
- Zhao X [117]
- Chen X [114]
- Wang Q [114]
- Conway JF [113]
- Chiu W [109]
- Rao Z [108]
- Huiskonen JT [107]
- Novacek J [107]
- Haynes BF [106]
- Qi J [106]
- Chen Y [105]
- Cui Y [105]
- Zheng Q [105]
- Edwards RJ [104]
- Gao GF [103]
- Acharya P [102]
- Parks R [101]
- Janowska K [100]
- Klose T [99]
- Sun L [97]
- Wang H [97]
- Xia N [97]
- Li D [96]
- Yang H [96]
- Yu X [95]
- Briggs JAG [94]
- Diamond MS [94]
- Henderson R [94]
- Liu L [94]
- Shi Y [94]
- Sun H [94]
- Cheng L [93]
- Li W [93]
- Xiong X [90]
- Liu X [89]
- Gu Y [87]
- Jiang W [87]
- He M [86]
- Stuart DI [86]
- Subramaniam S [86]
- Zhu X [86]
- Chen W [85]
- Jacobs-sera D [84]
- Saunders KO [84]
- Wang C [84]
- Wu Y [84]
- Butcher SJ [83]
- Cheng T [82]
- Liu B [82]
- Veesler D [82]
- Wang Z [82]
- Guo Y [81]
- He J [81]
- Mckenna R [81]
- Zhang L [81]
- Chipman P [80]
- Mansouri K [80]
- Stalls V [80]
- Xu L [79]
- Yang X [79]
- Zhang Q [79]
- Zhao J [79]
- Gobeil S [78]
- Huang Z [78]
- Li F [78]
- Li X [78]
- Liu P [78]
- Zhou J [78]
- Ho MC [76]
- Huang X [76]
- Kuhn RJ [75]
- Zhang C [75]
- Li M [74]
- Li L [73]
Author by ORCID
- Plevka P [189]
- Zhou ZH [154]
- Fuzik T [147]
- Conway JF [107]
- Huiskonen JT [106]
- Edwards RJ [99]
- Chiu W [97]
- Zheng Q [95]
- Novacek J [85]
- Xiong X [79]
- Gao GF [77]
- Butcher SJ [76]
- Briggs JAG [76]
- Chipman P [75]
- Jiang W [70]
- Klose T [68]
- Mietzsch M [66]
- Cui Y [66]
- Gobeil SM [64]
- Zhu R [64]
- Xiao H [64]
- Kwong PD [63]
- Wang X [62]
- Mckenna R [61]
- Subramaniam S [61]
- Walls AC [59]
- Srivastava SS [58]
- Cusack S [58]
- Qi J [58]
- Xia N [58]
- Huang Z [57]
- Siborova M [57]
- Bostina M [57]
- Chang YC [55]
- Li S [55]
- Baker TS [54]
- Kotecha A [52]
- Corti D [52]
- Yin Z [52]
- Wolf M [51]
- Ayala R [51]
- Yang TJ [51]
- Benesik M [49]
- Peng R [45]
- Cong Y [45]
- Hrebik D [45]
- Murata K [44]
- Acharya P [44]
- Veesler D [44]
- Schmid MF [44]
- Chipman PR [44]
- Dai X [43]
- Ke Z [43]
- Rosenthal PB [42]
- Stalls V [42]
- Zhang C [42]
- Krausslich HG [42]
- Xiang Y [42]
- Hodgkinson-bean J [41]
- Tortorici MA [41]
- Zhang J [41]
- Berezuk AM [40]
- Stuart DI [40]
- Pantucek R [40]
- Yu PY [40]
- Park YJ [40]
- Guo Y [39]
- Sempowski GD [39]
- Schoehn G [38]
- Dimitrov DS [38]
- Manne K [38]
- Cerutti G [38]
- Wang F [37]
- Caston JR [37]
- Ren J [37]
- Rutter GL [37]
- Zheng J [37]
- Liao YT [36]
- Rao Z [36]
- Qu K [36]
- Effantin G [36]
- Maharana J [36]
- Franklin A [36]
- Van Kuppeveld Fjm [35]
- Xia X [35]
- Shao Q [35]
- Ranson NA [35]
- Yu X [35]
- Lee H [35]
- Bamford DH [35]
- Hsu STD [35]
- Xu S [35]
- Fang Q [35]
- Lu Y [34]
- Grimes JM [34]
- Zhang J [34]
- Skubnik K [34]
- Zhou Q [34]
- Cheng L [34]
- Bowen JE [34]
Journal
- NAT COMMUN [836]
- TO BE PUBLISHED [445]
- J VIROL [392]
- PNAS [390]
- CELL [260]
- NATURE [193]
- SCI ADV [183]
- BIORXIV [182]
- SCIENCE [173]
- STRUCTURE [163]
- CELL REP [160]
- PLOS PATHOG [144]
- NAT STRUCT MOL BIOL [108]
- CELL HOST MICROBE [106]
- J MOL BIOL [95]
- CELL RES [79]
- COMMUN BIOL [77]
- NAT MICROBIOL [69]
- CELL DISCOV [68]
- VIRUSES [67]
- EMBO J [62]
- MOL CELL [55]
- VIROLOGY [42]
- PLOS BIOL [40]
- IMMUNITY [35]
- J STRUCT BIOL [35]
- ELIFE [32]
- SIGNAL TRANSDUCT TARGET THER [32]
- ISCIENCE [25]
- MBIO [25]
- J BIOL CHEM [24]
- SCI REP [24]
- PROTEIN CELL [21]
- RES SQ [19]
- NAT METHODS [18]
- PNAS NEXUS [18]
- EMERG MICROBES INFECT [17]
- NATL SCI REV [17]
- SCI TRANSL MED [17]
- J MED CHEM [16]
- ACTA CRYSTALLOGR D STRUCT BIOL [15]
- NUCLEIC ACIDS RES [15]
- INT J MOL SCI [13]
- FRONT IMMUNOL [11]
- CHIN SCI BULL [10]
- J GEN VIROL [10]
- LIFE SCI ALLIANCE [10]
- HLIFE [9]
- MOL THER METHODS CLIN DEV [8]
- PLOS ONE [8]
- PROTEIN SCI [8]
- SCI IMMUNOL [8]
- IUCRJ [7]
- J STRUCT BIOL X [7]
- NPJ VACCINES [7]
- VIROL SIN [7]
- BIOMOLECULES [6]
- BIOPHYS J [6]
- SCI BULL (BEIJING) [6]
- CELL REP MED [5]
- EMBO REP [5]
- J MED VIROL [5]
- MEDCOMM (2020) [5]
- MOL THER [5]
- NAT CHEM BIOL [5]
- CELL MICROBIOL [4]
- DIAN ZI XIAN WEI XUE BAO [4]
- J EXP MED [4]
- MICROBIOL IMMUNOL [4]
- NANOSCALE [4]
- NPJ DRUG DISCOV [4]
- ACS INFECT DIS. [3]
- BIOCHEM BIOPHYS RES COMMUN [3]
- BIOCHIM BIOPHYS ACTA [3]
- ENVIRON SCI TECHNOL. [3]
- HUM GENE THER [3]
- INT J BIOL MACROMOL [3]
- J CLIN INV [3]
- J IMMUNOL [3]
- LANCET MICROBE [3]
- MICROBIOL SPECTR [3]
- NAT IMMUNOL [3]
- NPJ VIRUSES [3]
- VIRUS RES [3]
- ACS NANO [2]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [2]
- ANTIVIRAL RES [2]
- BIOTECHNOL REP [2]
- COMMUNICATIONS BIOLOGY [2]
- COMPUT STRUCT BIOTECHNOL J [2]
- ENVIRON SCI TECHNOL [2]
- FRONT MICROBIOL [2]
- J AM CHEM SOC [2]
- J NANOBIOTECHNOLOGY [2]
- JCI INSIGHT [2]
- MOL MICROBIOL [2]
- PATHOG IMMUN [2]
- PHYS BIOL [2]
- PLOS COMPUT BIOL [2]
- RNA [2]
Software
- RELION [1221]
- CRYOSPARC [776]
- CTFFIND [216]
- JSPR [126]
- IMOD [102]
- CISTEM [88]
- AUTO3DEM [79]
- GCTF [63]
- DYNAMO [54]
- EMAN2 [54]
- EMAN [51]
- CHIMERA [47]
- FREALIGN [43]
- AV3 [40]
- TOM TOOLBOX [40]
- SPIDER [36]
- XMIPP [33]
- MATLAB [30]
- NOVACTF [27]
- PEET [26]
- EM3DR2 [25]
- EMFIT [23]
- IMIRS [23]
- CTFPHASEFLIP [22]
- J3DR [21]
- WARP [21]
- JALIGN [19]
- MPSA [18]
- BSOFT [16]
- ETOMO [16]
- UCSF CHIMERA [16]
- SPRING [15]
- PHENIX [14]
- PROTOMO [13]
- IMAGIC [12]
- MRC [12]
- CTFFIND3 [11]
- JSPR, EMAN2, EMAN [11]
- COOT [10]
- ISOLDE [10]
- TOM [10]
- PFT2, EM3DR2 [9]
- CHIMERA, SITUS [8]
- EMAN, EMAN2, MPSA [8]
- EMPFT EM3DR [8]
- IMOD, DYNAMO [8]
- AMIRAFPM [7]
- EMAN2, SPIDER, XMIPP [7]
- EMCLARITY [7]
- IMOD, PROTOMO, I3, EMAN [7]
- JSPR, EMAN, EMAN2 [7]
- PFT2 AND EM3DR2 [7]
- SAVR [7]
- URO [7]
- CRYOLO [6]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- SITUS [6]
- COOT, SPDBV, REFMAC5 [5]
- IHRSR [5]
- MPSA, EMAN, EMAN2 [5]
- NOVASTA [5]
- PFT [5]
- PFT2, EM3DR2, POR, P3DR [5]
- AUTO3DEM V3.13 [4]
- BSOFT, PFT3DR [4]
- EMAN, IMAGIC, SPIDER [4]
- EMBL, P3DR [4]
- EMBL-ICOS, MRC [4]
- IMOD, EMAN, EMAN2, TOMOHUNTER [4]
- IMOD, RAPTOR, PROTOMO [4]
- PFT - EM3DR [4]
- PROJALIGN [4]
- SPIDER, EMAN [4]
- SPIDER, XMIPP [4]
- STOPGAP [4]
- UCSF CHIMERAX [4]
- AMIRA [3]
- CHIMERA, NAMD/MDFF [3]
- EMAN, EMAN2 [3]
- EMAN, MPSA [3]
- EMAN, SPIDER [3]
- FOLDHUNTER [3]
- I3 [3]
- IMIRS, EMAN1 [3]
- IMOD, XMIPP, TOMO3D [3]
- P3DR [3]
- PFT EM3DR [3]
- PFT2 EM3DR2 [3]
- SCIPION [3]
- SPIDER,XMIPP [3]
- VEDA [3]
- AUTO3DEM, CTFFIND3 [2]
- AUTO3DEM, EMAN2 [2]
- AUTO3DEM, ROBEM, AUTOPP [2]
- CHARMM [2]
- CHIMERA, COOT, NAMD/MDFF [2]
- CNSSOLVE [2]
- EM3DR [2]
- EM3DR2, P3DR [2]
Microscope
- FEI TITAN KRIOS [2952]
- TFS KRIOS [553]
- FEI POLARA 300 [186]
- FEI TALOS ARCTICA [161]
- FEI TECNAI F20 [161]
- FEI TECNAI F30 [151]
- TFS GLACIOS [91]
- FEI TECNAI ARCTICA [75]
- JEOL 2200FS [72]
- FEI/PHILIPS CM300FEG/T [67]
- JEOL CRYO ARM 300 [66]
- FEI/PHILIPS CM200FEG [63]
- FEI TITAN [61]
- JEOL 3200FSC [52]
- FEI TECNAI 20 [20]
- JEOL 2010F [15]
- FEI/PHILIPS CM120T [14]
- FEI/PHILIPS CM200T [14]
- TFS TALOS [14]
- FEI TECNAI 12 [13]
- JEOL 3200FS [12]
- FEI/PHILIPS CM200FEG/ST [9]
- FEI TECNAI SPIRIT [8]
- JEOL 2100 [7]
- JEOL 2200FSC [6]
- FEI/PHILIPS CM300FEG/ST [5]
- JEOL 1400 [5]
- TFS TALOS F200C [5]
- JEOL 3000SFF [4]
- JEOL CRYO ARM 200 [4]
- JEOL 1000EES [3]
- JEOL 1200EXII [3]
- FEI TECNAI SPHERA [2]
- JEOL 1200 [2]
- JEOL 4000EX [2]
- OTHER [2]
- ZEISS LIBRA120PLUS [2]
- FEI/PHILIPS CM10 [1]
- FEI/PHILIPS CM300FEG/HE [1]
- FEI/PHILIPS EM400 [1]
- FEI/PHILIPS EM420 [1]
- JEOL 2010 [1]
- JEOL 2100F [1]
- JEOL 4000 [1]
Electron Source
- FIELD EMISSION GUN [4764]
- LAB6 [71]
- TUNGSTEN HAIRPIN [28]
- OTHER [17]
Film or detector model
- GATAN K3 6K X 4K [1038]
- GATAN K2 SUMMIT 4K X 4K [901]
- GATAN K3 BIOQUANTUM 6K X 4K [717]
- FEI FALCON III 4K X 4K [428]
- FEI FALCON IV 4K X 4K [379]
- KODAK SO-163 FILM [305]
- FEI FALCON II 4K X 4K [271]
- GATAN K2 QUANTUM 4K X 4K [233]
- GATAN ULTRASCAN 4000 4K X 4K [114]
- TFS FALCON 4I 4K X 4K [59]
- DIRECT ELECTRON DE-20 5K X 3K [57]
- OTHER [36]
- FEI EAGLE 4K X 4K [33]
- GENERIC CCD [33]
- GATAN K2 BASE 4K X 4K [29]
- GATAN K2 4K X 4K [24]
- TVIPS TEMCAM-F415 4K X 4K [22]
- GATAN K3 BIOCONTINUUM 6K X 4K [19]
- DIRECT ELECTRON DE-64 8K X 8K [16]
- GENERIC TVIPS 4K X 4K [15]
- TVIPS TEMCAM-F224 2K X 2K [15]
- TVIPS TEMCAM-F416 4K X 4K [14]
- GENERIC GATAN 4K X 4K [11]
- DIRECT ELECTRON DE-16 4K X 4K [9]
- GENERIC GATAN [9]
- FEI EAGLE 2K X 2K [8]
- FEI FALCON I 4K X 4K [6]
- GATAN ULTRASCAN 1000 2K X 2K [6]
- DIRECT ELECTRON DE-12 4K X 3K [5]
- GATAN MULTISCAN [5]
- GENERIC CCD 2K X 2K [5]
- GENERIC TVIPS [5]
- AGFA SCIENTA FILM [4]
- DECTRIS ELA 1K X 0.5K [3]
- DIRECT ELECTRON APOLLO 4K X 4K [3]
- FEI CETA 4K X 4K [3]
- GATAN K2 IS 4K X 4K [3]
- GATAN ULTRASCAN 10000 10K X 10K [3]
- GENERIC FILM [1]
- KODAK 4489 FILM [1]
EMPIAR Experiment type
- EMDB [13]
EMPIAR Image category
- TILT SERIES [6]
- MICROGRAPHS - MULTIFRAME [4]
- MICROGRAPHS - SINGLE FRAME [3]
- ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [1]
- RECONSTRUCTED VOLUMES [1]
External links
- PDB [3280]
- UniProt [3042]
- PDBe-Kb [2813]
- Pfam [2634]
- InterPro [2571]
- Gene Ontology [2531]
- ChEBI [1674]
- ChEMBL [1552]
- Complex Portal [1219]
- AlphaFold DB [990]
- DrugBank [526]
- EMPIAR [209]
- SCOP2 [70]
- CATH [63]
- EMDB [13]
Fokine A, Zhu J, Klose T, Vago F, Arnaud C, Wang Z, Khare B, Rossmann MG, Chen Z, Sun L, Fang Q, Kuhn R, Rao VB
To Be Published
Release date: Dec. 24, 2025
Resolution: 2.29 Å
EM Method: Single-particle
Fitted PDBs: 9kr4
Q-score: 0.684
Resolution: 2.29 Å
EM Method: Single-particle
Fitted PDBs: 9kr4
Q-score: 0.684
Tang L, Cao S, Chen Q, Zhong C, Wang F, Liu Z, Zhang X, Ke C
To Be Published
Release date: Dec. 24, 2025
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 9uea
Q-score: 0.55
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 9uea
Q-score: 0.55
Wang X, Lin Z
To Be Published
Release date: Dec. 24, 2025
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9ueb
Q-score: 0.596
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9ueb
Q-score: 0.596
Wang X, Lin Z
To Be Published
Release date: Dec. 24, 2025
Resolution: 5.8 Å
EM Method: Subtomogram averaging
Resolution: 5.8 Å
EM Method: Subtomogram averaging
Huang QJ, McDaniel CN, Griffith AA, Schiffer CA, Somasundaran M
J Vis Exp (2025) [ DOI: doi:10.3791/68636 Pubmed: 41284633 ]
Bellis NF, Lokareddy RK, Pavlenok M, Horton SLC, Kizziah JL, Forti F, Schneider DA, Niederweis M, Briani F, Cingolani G
Res Sq (2025) [ DOI: doi:10.21203/rs.3.rs-7746245/v1 Pubmed: 41282253 ]
Release date: Dec. 24, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9yf8
Q-score: 0.52
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9yf8
Q-score: 0.52
Bellis NF, Lokareddy RK, Pavlenok M, Horton SLC, Kizziah JL, Forti F, Schneider DA, Niederweis M, Briani F, Cingolani G
Res Sq (2025) [ DOI: doi:10.21203/rs.3.rs-7746245/v1 Pubmed: 41282253 ]
Release date: Dec. 17, 2025
Resolution: 4.61 Å
EM Method: Single-particle
Resolution: 4.61 Å
EM Method: Single-particle
Mundy RM, Waraich K, Bates EA, Rizkallah PJ, Baker AT, Young MT, Morris E, da Fonseca PCA, Bliss CM, Matthews D, Bhella D, Parker AL
bioRxiv (2025) [ DOI: doi:10.1101/2025.09.20.677498 ]
Mundy RM, Waraich K, Bates EA, Rizkallah PJ, Baker AT, Young MT, Morris E, da Fonseca PCA, Bliss CM, Matthews D, Bhella D, Parker AL
bioRxiv (2025) [ DOI: doi:10.1101/2025.09.20.677498 ]
Release date: Dec. 17, 2025
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 9uzo
Q-score: 0.493
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 9uzo
Q-score: 0.493
Lin CSH, Li CA, Wang CH, Kao CF, Chiu HJ, Yeh MC, Gao HD, Ho MC, Lee HM, Chang W
To Be Published
Filter By
Current Database
- EMDB [4880]
- EMPIAR [13]
Current status
- REL [4893]
Sample type
- Protein [3292]
- Virus [3007]
- Complex [1895]
- Ligand [1708]
- Sample [643]
- RNA [150]
- Cellular component [91]
- DNA [48]
- Other [17]
- Cell [14]
- Tissue [2]
Organism
- Severe acute respiratory syndrome coronavirus [1242]
- Homo sapiens [963]
- Mus musculus [179]
- Human immunodeficiency virus 1 [101]
- Synthetic construct [62]
- Escherichia virus t7 [58]
- Escherichia coli [53]
- Enterovirus d [48]
- Staphylococcus phage 812 [44]
- Adeno-associated virus [43]
- Enterovirus a [38]
- Influenza a virus [37]
- Human coronavirus hku1 [37]
- Severe acute respiratory syndrome coronavirus [35]
- Human cytomegalovirus [34]
- Enterovirus a [33]
- Cypovirus 1 [32]
- Mycolicibacterium smegmatis [32]
- Vicugna pacos [32]
- Chikungunya virus [32]
- Paramecium bursaria chlorella virus 1 [31]
- Enterovirus b [31]
- Enterovirus c [31]
- Brome mosaic virus [30]
- Mycobacterium phage bxb1 [30]
- Zika virus [30]
- Lama glama [29]
- Pseudomonas phage phi6 [26]
- Enterobacteria phage t4 [24]
- Pseudomonas phage jbd30 [24]
- Human cytomegalovirus [23]
- Salmonella phage p22 [23]
- Human herpesvirus 1 [22]
- Tobacco mosaic virus [22]
- Human mastadenovirus c [22]
- Eastern equine encephalitis virus [21]
- Tequintavirus dt57c [21]
- Enquatrovirus n4 [21]
- Suid alphaherpesvirus 1 [20]
- Human herpesvirus 8 [19]
- Rift valley fever phlebovirus [18]
- Influenza a virus [18]
- Influenza b virus [18]
- Norwalk virus [18]
- Rotavirus a [18]
- Hepatitis b virus [17]
- Orthoflavivirus flavi [17]
- Escherichia phage ms2 [17]
- Enterovirus b [17]
- Zaire ebolavirus [17]
- Enterovirus a [17]
- Western equine encephalitis virus [16]
- Deformed wing virus [16]
- Staphylococcus phage p68 [16]
- Escherichia phage lambda [16]
- Felixounavirus johannrwettstein [16]
- Salmonella phage p22 [16]
- Monkeypox virus [15]
- Vaccinia virus [15]
- Human herpesvirus 3 [15]
- Epstein-barr virus (strain gd1) [15]
- Mammalian orthoreovirus [15]
- Avian infectious bursal disease virus [15]
- Enterovirus b [15]
- Rotavirus a [15]
- Bacillus phage phi29 [14]
- Dengue virus [14]
- Indiana vesiculovirus [14]
- Zaire ebolavirus [14]
- Nipah virus [14]
- Autographa californica multiple nucleopolyhedrovirus [14]
- Alphabaculovirus aucalifornicae [14]
- Escherichia coli [14]
- Vaccinia virus [13]
- Pseudomonas virus prd1 [13]
- Certrevirus phite [13]
- Influenza b virus [13]
- Lassa mammarenavirus [13]
- Rhinovirus b [13]
- Middle east respiratory syndrome-related coronavirus [13]
- Middle east respiratory syndrome-related coronavirus [13]
- Escherichia virus su10 [13]
- Eastern chimpanzee simian foamy virus [13]
- Severe acute respiratory syndrome coronavirus [13]
- Enterovirus b [13]
- Enterovirus a [13]
- Epstein-barr virus (strain gd1) [12]
- Alphapapillomavirus 9 [12]
- Adeno-associated dependoparvovirus a [12]
- Bluetongue virus [12]
- Measles morbillivirus [12]
- Sulfolobus monocaudavirus smv1 [12]
- Escherichia virus qbeta [12]
- Human coronavirus hku1 [12]
- Human herpesvirus 1 [11]
- African swine fever virus [11]
- Venezuelan equine encephalitis virus [11]
- Machupo virus [11]
- Simian immunodeficiency virus [11]
- Enterovirus b [11]
EM Method
- Single-particle [4279]
- Subtomogram averaging [383]
- Tomography [118]
- Helical reconstruction [98]
- Electron Crystallography [2]
Resolution
- < 2Å [20]
- ≥ 2Å and < 3Å [819]
- ≥ 3Å and < 4Å [2055]
- ≥ 4Å and < 5Å [509]
- ≥ 5Å and < 6Å [98]
- ≥ 6Å and < 8Å [245]
- ≥ 8Å and < 12Å [364]
- ≥ 12Å and < 16Å [169]
- ≥ 16Å and < 20Å [112]
- ≥ 20Å and < 30Å [202]
- ≥ 30Å [126]
Model molecular weight
- 0-50 kDa [26]
- 50-100 kDa [60]
- 100-250 kDa [405]
- 250-500 kDa [1078]
- 500-1000 kDa [613]
- 1-2 MDa [155]
- 2-5 MDa [252]
- 5-10 MDa [357]
- > 10 MDa [321]
Release Date
- 2025 [571]
- 2024 [735]
- 2023 [642]
- 2022 [682]
- 2021 [551]
- 2020 [446]
- 2019 [265]
- 2018 [170]
- 2017 [119]
- 2016 [130]
- 2015 [73]
- 2014 [70]
- 2013 [109]
- 2012 [71]
- 2011 [36]
- 2010 [47]
- 2009 [64]
- 2008 [15]
- 2007 [40]
- 2006 [21]
- 2005 [22]
- 2004 [4]
- 2003 [4]
- 2002 [6]
Author by name
- Wang X [312]
- Wang Y [290]
- Zhou ZH [257]
- Zhang Y [243]
- Li Z [230]
- Zhang X [217]
- Zhang J [202]
- Plevka P [192]
- Rossmann MG [182]
- Li S [173]
- Wang P [171]
- Liu Y [169]
- Chen Z [162]
- Wang J [161]
- Li Y [152]
- Liu H [152]
- Fuzik T [149]
- Liu C [138]
- Wang L [136]
- Huang Y [125]
- Yu H [125]
- Liu Z [123]
- Liu J [122]
- Gao Y [120]
- Liu S [118]
- Zhang Z [117]
- Zhao X [117]
- Chen X [114]
- Wang Q [114]
- Conway JF [113]
- Chiu W [109]
- Rao Z [108]
- Huiskonen JT [107]
- Novacek J [107]
- Haynes BF [106]
- Qi J [106]
- Chen Y [105]
- Cui Y [105]
- Zheng Q [105]
- Edwards RJ [104]
- Gao GF [103]
- Acharya P [102]
- Parks R [101]
- Janowska K [100]
- Klose T [99]
- Sun L [97]
- Wang H [97]
- Xia N [97]
- Li D [96]
- Yang H [96]
- Yu X [95]
- Briggs JAG [94]
- Diamond MS [94]
- Henderson R [94]
- Liu L [94]
- Shi Y [94]
- Sun H [94]
- Cheng L [93]
- Li W [93]
- Xiong X [90]
- Liu X [89]
- Gu Y [87]
- Jiang W [87]
- He M [86]
- Stuart DI [86]
- Subramaniam S [86]
- Zhu X [86]
- Chen W [85]
- Jacobs-sera D [84]
- Saunders KO [84]
- Wang C [84]
- Wu Y [84]
- Butcher SJ [83]
- Cheng T [82]
- Liu B [82]
- Veesler D [82]
- Wang Z [82]
- Guo Y [81]
- He J [81]
- Mckenna R [81]
- Zhang L [81]
- Chipman P [80]
- Mansouri K [80]
- Stalls V [80]
- Xu L [79]
- Yang X [79]
- Zhang Q [79]
- Zhao J [79]
- Gobeil S [78]
- Huang Z [78]
- Li F [78]
- Li X [78]
- Liu P [78]
- Zhou J [78]
- Ho MC [76]
- Huang X [76]
- Kuhn RJ [75]
- Zhang C [75]
- Li M [74]
- Li L [73]
Author by ORCID
- Plevka P [189]
- Zhou ZH [154]
- Fuzik T [147]
- Conway JF [107]
- Huiskonen JT [106]
- Edwards RJ [99]
- Chiu W [97]
- Zheng Q [95]
- Novacek J [85]
- Xiong X [79]
- Gao GF [77]
- Butcher SJ [76]
- Briggs JAG [76]
- Chipman P [75]
- Jiang W [70]
- Klose T [68]
- Mietzsch M [66]
- Cui Y [66]
- Gobeil SM [64]
- Zhu R [64]
- Xiao H [64]
- Kwong PD [63]
- Wang X [62]
- Mckenna R [61]
- Subramaniam S [61]
- Walls AC [59]
- Srivastava SS [58]
- Cusack S [58]
- Qi J [58]
- Xia N [58]
- Huang Z [57]
- Siborova M [57]
- Bostina M [57]
- Chang YC [55]
- Li S [55]
- Baker TS [54]
- Kotecha A [52]
- Corti D [52]
- Yin Z [52]
- Wolf M [51]
- Ayala R [51]
- Yang TJ [51]
- Benesik M [49]
- Peng R [45]
- Cong Y [45]
- Hrebik D [45]
- Murata K [44]
- Acharya P [44]
- Veesler D [44]
- Schmid MF [44]
- Chipman PR [44]
- Dai X [43]
- Ke Z [43]
- Rosenthal PB [42]
- Stalls V [42]
- Zhang C [42]
- Krausslich HG [42]
- Xiang Y [42]
- Hodgkinson-bean J [41]
- Tortorici MA [41]
- Zhang J [41]
- Berezuk AM [40]
- Stuart DI [40]
- Pantucek R [40]
- Yu PY [40]
- Park YJ [40]
- Guo Y [39]
- Sempowski GD [39]
- Schoehn G [38]
- Dimitrov DS [38]
- Manne K [38]
- Cerutti G [38]
- Wang F [37]
- Caston JR [37]
- Ren J [37]
- Rutter GL [37]
- Zheng J [37]
- Liao YT [36]
- Rao Z [36]
- Qu K [36]
- Effantin G [36]
- Maharana J [36]
- Franklin A [36]
- Van Kuppeveld Fjm [35]
- Xia X [35]
- Shao Q [35]
- Ranson NA [35]
- Yu X [35]
- Lee H [35]
- Bamford DH [35]
- Hsu STD [35]
- Xu S [35]
- Fang Q [35]
- Lu Y [34]
- Grimes JM [34]
- Zhang J [34]
- Skubnik K [34]
- Zhou Q [34]
- Cheng L [34]
- Bowen JE [34]
Journal
- NAT COMMUN [836]
- TO BE PUBLISHED [445]
- J VIROL [392]
- PNAS [390]
- CELL [260]
- NATURE [193]
- SCI ADV [183]
- BIORXIV [182]
- SCIENCE [173]
- STRUCTURE [163]
- CELL REP [160]
- PLOS PATHOG [144]
- NAT STRUCT MOL BIOL [108]
- CELL HOST MICROBE [106]
- J MOL BIOL [95]
- CELL RES [79]
- COMMUN BIOL [77]
- NAT MICROBIOL [69]
- CELL DISCOV [68]
- VIRUSES [67]
- EMBO J [62]
- MOL CELL [55]
- VIROLOGY [42]
- PLOS BIOL [40]
- IMMUNITY [35]
- J STRUCT BIOL [35]
- ELIFE [32]
- SIGNAL TRANSDUCT TARGET THER [32]
- ISCIENCE [25]
- MBIO [25]
- J BIOL CHEM [24]
- SCI REP [24]
- PROTEIN CELL [21]
- RES SQ [19]
- NAT METHODS [18]
- PNAS NEXUS [18]
- EMERG MICROBES INFECT [17]
- NATL SCI REV [17]
- SCI TRANSL MED [17]
- J MED CHEM [16]
- ACTA CRYSTALLOGR D STRUCT BIOL [15]
- NUCLEIC ACIDS RES [15]
- INT J MOL SCI [13]
- FRONT IMMUNOL [11]
- CHIN SCI BULL [10]
- J GEN VIROL [10]
- LIFE SCI ALLIANCE [10]
- HLIFE [9]
- MOL THER METHODS CLIN DEV [8]
- PLOS ONE [8]
- PROTEIN SCI [8]
- SCI IMMUNOL [8]
- IUCRJ [7]
- J STRUCT BIOL X [7]
- NPJ VACCINES [7]
- VIROL SIN [7]
- BIOMOLECULES [6]
- BIOPHYS J [6]
- SCI BULL (BEIJING) [6]
- CELL REP MED [5]
- EMBO REP [5]
- J MED VIROL [5]
- MEDCOMM (2020) [5]
- MOL THER [5]
- NAT CHEM BIOL [5]
- CELL MICROBIOL [4]
- DIAN ZI XIAN WEI XUE BAO [4]
- J EXP MED [4]
- MICROBIOL IMMUNOL [4]
- NANOSCALE [4]
- NPJ DRUG DISCOV [4]
- ACS INFECT DIS. [3]
- BIOCHEM BIOPHYS RES COMMUN [3]
- BIOCHIM BIOPHYS ACTA [3]
- ENVIRON SCI TECHNOL. [3]
- HUM GENE THER [3]
- INT J BIOL MACROMOL [3]
- J CLIN INV [3]
- J IMMUNOL [3]
- LANCET MICROBE [3]
- MICROBIOL SPECTR [3]
- NAT IMMUNOL [3]
- NPJ VIRUSES [3]
- VIRUS RES [3]
- ACS NANO [2]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [2]
- ANTIVIRAL RES [2]
- BIOTECHNOL REP [2]
- COMMUNICATIONS BIOLOGY [2]
- COMPUT STRUCT BIOTECHNOL J [2]
- ENVIRON SCI TECHNOL [2]
- FRONT MICROBIOL [2]
- J AM CHEM SOC [2]
- J NANOBIOTECHNOLOGY [2]
- JCI INSIGHT [2]
- MOL MICROBIOL [2]
- PATHOG IMMUN [2]
- PHYS BIOL [2]
- PLOS COMPUT BIOL [2]
- RNA [2]
Software
- RELION [1221]
- CRYOSPARC [776]
- CTFFIND [216]
- JSPR [126]
- IMOD [102]
- CISTEM [88]
- AUTO3DEM [79]
- GCTF [63]
- DYNAMO [54]
- EMAN2 [54]
- EMAN [51]
- CHIMERA [47]
- FREALIGN [43]
- AV3 [40]
- TOM TOOLBOX [40]
- SPIDER [36]
- XMIPP [33]
- MATLAB [30]
- NOVACTF [27]
- PEET [26]
- EM3DR2 [25]
- EMFIT [23]
- IMIRS [23]
- CTFPHASEFLIP [22]
- J3DR [21]
- WARP [21]
- JALIGN [19]
- MPSA [18]
- BSOFT [16]
- ETOMO [16]
- UCSF CHIMERA [16]
- SPRING [15]
- PHENIX [14]
- PROTOMO [13]
- IMAGIC [12]
- MRC [12]
- CTFFIND3 [11]
- JSPR, EMAN2, EMAN [11]
- COOT [10]
- ISOLDE [10]
- TOM [10]
- PFT2, EM3DR2 [9]
- CHIMERA, SITUS [8]
- EMAN, EMAN2, MPSA [8]
- EMPFT EM3DR [8]
- IMOD, DYNAMO [8]
- AMIRAFPM [7]
- EMAN2, SPIDER, XMIPP [7]
- EMCLARITY [7]
- IMOD, PROTOMO, I3, EMAN [7]
- JSPR, EMAN, EMAN2 [7]
- PFT2 AND EM3DR2 [7]
- SAVR [7]
- URO [7]
- CRYOLO [6]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- SITUS [6]
- COOT, SPDBV, REFMAC5 [5]
- IHRSR [5]
- MPSA, EMAN, EMAN2 [5]
- NOVASTA [5]
- PFT [5]
- PFT2, EM3DR2, POR, P3DR [5]
- AUTO3DEM V3.13 [4]
- BSOFT, PFT3DR [4]
- EMAN, IMAGIC, SPIDER [4]
- EMBL, P3DR [4]
- EMBL-ICOS, MRC [4]
- IMOD, EMAN, EMAN2, TOMOHUNTER [4]
- IMOD, RAPTOR, PROTOMO [4]
- PFT - EM3DR [4]
- PROJALIGN [4]
- SPIDER, EMAN [4]
- SPIDER, XMIPP [4]
- STOPGAP [4]
- UCSF CHIMERAX [4]
- AMIRA [3]
- CHIMERA, NAMD/MDFF [3]
- EMAN, EMAN2 [3]
- EMAN, MPSA [3]
- EMAN, SPIDER [3]
- FOLDHUNTER [3]
- I3 [3]
- IMIRS, EMAN1 [3]
- IMOD, XMIPP, TOMO3D [3]
- P3DR [3]
- PFT EM3DR [3]
- PFT2 EM3DR2 [3]
- SCIPION [3]
- SPIDER,XMIPP [3]
- VEDA [3]
- AUTO3DEM, CTFFIND3 [2]
- AUTO3DEM, EMAN2 [2]
- AUTO3DEM, ROBEM, AUTOPP [2]
- CHARMM [2]
- CHIMERA, COOT, NAMD/MDFF [2]
- CNSSOLVE [2]
- EM3DR [2]
- EM3DR2, P3DR [2]
Microscope
- FEI TITAN KRIOS [2952]
- TFS KRIOS [553]
- FEI POLARA 300 [186]
- FEI TALOS ARCTICA [161]
- FEI TECNAI F20 [161]
- FEI TECNAI F30 [151]
- TFS GLACIOS [91]
- FEI TECNAI ARCTICA [75]
- JEOL 2200FS [72]
- FEI/PHILIPS CM300FEG/T [67]
- JEOL CRYO ARM 300 [66]
- FEI/PHILIPS CM200FEG [63]
- FEI TITAN [61]
- JEOL 3200FSC [52]
- FEI TECNAI 20 [20]
- JEOL 2010F [15]
- FEI/PHILIPS CM120T [14]
- FEI/PHILIPS CM200T [14]
- TFS TALOS [14]
- FEI TECNAI 12 [13]
- JEOL 3200FS [12]
- FEI/PHILIPS CM200FEG/ST [9]
- FEI TECNAI SPIRIT [8]
- JEOL 2100 [7]
- JEOL 2200FSC [6]
- FEI/PHILIPS CM300FEG/ST [5]
- JEOL 1400 [5]
- TFS TALOS F200C [5]
- JEOL 3000SFF [4]
- JEOL CRYO ARM 200 [4]
- JEOL 1000EES [3]
- JEOL 1200EXII [3]
- FEI TECNAI SPHERA [2]
- JEOL 1200 [2]
- JEOL 4000EX [2]
- OTHER [2]
- ZEISS LIBRA120PLUS [2]
- FEI/PHILIPS CM10 [1]
- FEI/PHILIPS CM300FEG/HE [1]
- FEI/PHILIPS EM400 [1]
- FEI/PHILIPS EM420 [1]
- JEOL 2010 [1]
- JEOL 2100F [1]
- JEOL 4000 [1]
Electron Source
- FIELD EMISSION GUN [4764]
- LAB6 [71]
- TUNGSTEN HAIRPIN [28]
- OTHER [17]
Film or detector model
- GATAN K3 6K X 4K [1038]
- GATAN K2 SUMMIT 4K X 4K [901]
- GATAN K3 BIOQUANTUM 6K X 4K [717]
- FEI FALCON III 4K X 4K [428]
- FEI FALCON IV 4K X 4K [379]
- KODAK SO-163 FILM [305]
- FEI FALCON II 4K X 4K [271]
- GATAN K2 QUANTUM 4K X 4K [233]
- GATAN ULTRASCAN 4000 4K X 4K [114]
- TFS FALCON 4I 4K X 4K [59]
- DIRECT ELECTRON DE-20 5K X 3K [57]
- OTHER [36]
- FEI EAGLE 4K X 4K [33]
- GENERIC CCD [33]
- GATAN K2 BASE 4K X 4K [29]
- GATAN K2 4K X 4K [24]
- TVIPS TEMCAM-F415 4K X 4K [22]
- GATAN K3 BIOCONTINUUM 6K X 4K [19]
- DIRECT ELECTRON DE-64 8K X 8K [16]
- GENERIC TVIPS 4K X 4K [15]
- TVIPS TEMCAM-F224 2K X 2K [15]
- TVIPS TEMCAM-F416 4K X 4K [14]
- GENERIC GATAN 4K X 4K [11]
- DIRECT ELECTRON DE-16 4K X 4K [9]
- GENERIC GATAN [9]
- FEI EAGLE 2K X 2K [8]
- FEI FALCON I 4K X 4K [6]
- GATAN ULTRASCAN 1000 2K X 2K [6]
- DIRECT ELECTRON DE-12 4K X 3K [5]
- GATAN MULTISCAN [5]
- GENERIC CCD 2K X 2K [5]
- GENERIC TVIPS [5]
- AGFA SCIENTA FILM [4]
- DECTRIS ELA 1K X 0.5K [3]
- DIRECT ELECTRON APOLLO 4K X 4K [3]
- FEI CETA 4K X 4K [3]
- GATAN K2 IS 4K X 4K [3]
- GATAN ULTRASCAN 10000 10K X 10K [3]
- GENERIC FILM [1]
- KODAK 4489 FILM [1]
EMPIAR Experiment type
- EMDB [13]
EMPIAR Image category
- TILT SERIES [6]
- MICROGRAPHS - MULTIFRAME [4]
- MICROGRAPHS - SINGLE FRAME [3]
- ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [1]
- RECONSTRUCTED VOLUMES [1]
External links
- PDB [3280]
- UniProt [3042]
- PDBe-Kb [2813]
- Pfam [2634]
- InterPro [2571]
- Gene Ontology [2531]
- ChEBI [1674]
- ChEMBL [1552]
- Complex Portal [1219]
- AlphaFold DB [990]
- DrugBank [526]
- EMPIAR [209]
- SCOP2 [70]
- CATH [63]
- EMDB [13]