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Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • RNA [8]
  • Protein [7]
  • Ligand [6]
  • Sample [2]
  • Cellular component [1]

Organism

  • Escherichia coli [6]
  • Escherichia coli [3]
  • Thermus thermophilus [1]
  • Thermus thermophilus [1]
  • Homo sapiens [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 2-5 MDa [6]

Release Date

  • 2021 [3]
  • 2019 [3]
  • 2013 [1]
  • 2010 [1]

Author by name

  • Chat S [3]
  • D Urso G [3]
  • Gillet R [3]
  • Giudice E [3]
  • Gordiyenko Y [3]
  • Guyomar C [3]
  • Rae CD [3]
  • Ramakrishnan V [3]
  • Frank J [2]
  • Hashem Y [2]
  • Fu J [1]
  • Grassucci RA [1]
  • Hashem H [1]
  • Hellen CU [1]
  • Hellen CUT [1]
  • Lei J [1]
  • Liao HY [1]
  • Pestova TV [1]
  • Taylor D [1]
  • Unbehaun A [1]
  • Wower I [1]
  • Wower J [1]
  • Zwieb C [1]
  • Des Georges A [1]

Author by ORCID

  • D'urso G [3]
  • Giudice E [3]
  • Guyomar C [3]
  • Gordiyenko Y [3]
  • Ramakrishnan V [3]
  • Rae CD [3]
  • Des Georges A [1]

Journal

  • NAT COMMUN [3]
  • SCIENCE [3]
  • EMBO J [1]
  • NUCLEIC ACIDS RES [1]

Software

  • RELION [7]
  • GCTF [5]
  • CHIMERA [1]
  • SPIDER [1]

Microscope

  • FEI POLARA 300 [4]
  • FEI TITAN KRIOS [4]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • FEI FALCON II 4K X 4K [3]
  • GATAN K2 BASE 4K X 4K [3]
  • TVIPS TEMCAM-F415 4K X 4K [2]

External links

  • PDB [8]
  • AlphaFold DB [7]
  • PDBe-Kb [7]
  • UniProt [7]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • Gene Ontology [6]
  • InterPro [6]
  • Pfam [6]
  • Complex Portal [4]
  • SCOP2 [2]
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Showing 1 - 8 of 8. Page 1 of 1
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EMD-11710
Download Map
3D View
Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.
CryoEM
Release date: Aug. 18, 2021
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 7abz
Q-score: 0.359
Similar entry percentile: 12%

Guyomar C, D'Urso G, Chat S, Giudice E, Gillet R

Nat Commun (2021) 12 pp. 4909-4909 [ Pubmed: 34389707 DOI: doi:10.1038/s41467-021-24881-4 ]

EMD-11713
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3D View
Structure of accomodated trans-translation complex on E. Coli stalled ribosome.
CryoEM
Release date: Aug. 18, 2021
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 7ac7
Q-score: 0.478
Similar entry percentile: 46%

Guyomar C, D'Urso G, Chat S, Giudice E, Gillet R

Nat Commun (2021) 12 pp. 4909-4909 [ Pubmed: 34389707 DOI: doi:10.1038/s41467-021-24881-4 ]

EMD-11718
Download Map
3D View
Structure of post-translocated trans-translation complex on E. coli stalled ribosome.
CryoEM
Release date: Aug. 18, 2021
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 7acr
Q-score: 0.38
Similar entry percentile: 23%

Guyomar C, D'Urso G, Chat S, Giudice E, Gillet R

Nat Commun (2021) 12 pp. 4909-4909 [ Pubmed: 34389707 DOI: doi:10.1038/s41467-021-24881-4 ]

EMD-4476
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3D View
Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
CryoEM
Release date: March 13, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6q97
Q-score: -0.001
Similar entry percentile: 0%

Rae CD, Gordiyenko Y, Ramakrishnan V

Science (2019) 363 pp. 740-744 [ DOI: doi:10.1126/science.aav9370 Pubmed: 30765567 ]

EMD-4475
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Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
CryoEM
Release date: Feb. 27, 2019
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6q95
Q-score: 0.432
Similar entry percentile: 58%

Rae CD, Gordiyenko Y, Ramakrishnan V

Science (2019) 363 pp. 740-744 [ DOI: doi:10.1126/science.aav9370 Pubmed: 30765567 ]

EMD-4477
Download Map
3D View
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
CryoEM
Release date: Feb. 27, 2019
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6q98
Q-score: 0.37
Similar entry percentile: 69%

Rae CD, Gordiyenko Y, Ramakrishnan V

Science (2019) 363 pp. 740-744 [ DOI: doi:10.1126/science.aav9370 Pubmed: 30765567 ]

EMD-5801
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3D View
Structure of the mammalian ribosomal pre-termination complex associated with eRF1-eRF3-GDPNP
Negative staining
CryoEM
Release date: Dec. 25, 2013
Resolution: 9.7 Å
EM Method: Single-particle
Fitted PDBs: 3j5y
Q-score: 0.117
Similar entry percentile: 73%

des Georges A, Hashem Y, Unbehaun A, Grassucci RA, Taylor D, Hellen CU, Pestova TV, Frank J

Nucleic Acids Res (2014) 42 pp. 3409-3418 [ Pubmed: 24335085 DOI: doi:10.1093/nar/gkt1279 ]

EMD-5234
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3D View
transfer-messenger RNA in complex with the ribosome in the resume state in E.coli cells
CryoEM
Release date: Oct. 4, 2010
Resolution: 13.6 Å
EM Method: Single-particle
Fitted PDBs: 3iz4
Q-score: 0.048
Similar entry percentile: 34%

Fu J, Hashem Y, Wower I, Lei J, Liao HY, Zwieb C, Wower J, Frank J

EMBO J (2010) 29 pp. 3819-3825 [ DOI: doi:10.1038/emboj.2010.255 Pubmed: 20940705 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • RNA [8]
  • Protein [7]
  • Ligand [6]
  • Sample [2]
  • Cellular component [1]

Organism

  • Escherichia coli [6]
  • Escherichia coli [3]
  • Thermus thermophilus [1]
  • Thermus thermophilus [1]
  • Homo sapiens [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 2-5 MDa [6]

Release Date

  • 2021 [3]
  • 2019 [3]
  • 2013 [1]
  • 2010 [1]

Author by name

  • Chat S [3]
  • D Urso G [3]
  • Gillet R [3]
  • Giudice E [3]
  • Gordiyenko Y [3]
  • Guyomar C [3]
  • Rae CD [3]
  • Ramakrishnan V [3]
  • Frank J [2]
  • Hashem Y [2]
  • Fu J [1]
  • Grassucci RA [1]
  • Hashem H [1]
  • Hellen CU [1]
  • Hellen CUT [1]
  • Lei J [1]
  • Liao HY [1]
  • Pestova TV [1]
  • Taylor D [1]
  • Unbehaun A [1]
  • Wower I [1]
  • Wower J [1]
  • Zwieb C [1]
  • Des Georges A [1]

Author by ORCID

  • D'urso G [3]
  • Giudice E [3]
  • Guyomar C [3]
  • Gordiyenko Y [3]
  • Ramakrishnan V [3]
  • Rae CD [3]
  • Des Georges A [1]

Journal

  • NAT COMMUN [3]
  • SCIENCE [3]
  • EMBO J [1]
  • NUCLEIC ACIDS RES [1]

Software

  • RELION [7]
  • GCTF [5]
  • CHIMERA [1]
  • SPIDER [1]

Microscope

  • FEI POLARA 300 [4]
  • FEI TITAN KRIOS [4]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • FEI FALCON II 4K X 4K [3]
  • GATAN K2 BASE 4K X 4K [3]
  • TVIPS TEMCAM-F415 4K X 4K [2]

External links

  • PDB [8]
  • AlphaFold DB [7]
  • PDBe-Kb [7]
  • UniProt [7]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • Gene Ontology [6]
  • InterPro [6]
  • Pfam [6]
  • Complex Portal [4]
  • SCOP2 [2]