Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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Current Database

  • EMDB [23]

Current status

  • REL [23]

Sample type

  • Virus [23]
  • Protein [14]
  • Sample [2]
  • DNA [1]

Organism

  • Enterovirus d [6]
  • Escherichia phage ms2 [3]
  • Alphapapillomavirus 9 [3]
  • Eastern equine encephalitis virus [2]
  • Human immunodeficiency virus 1 [2]
  • 12059 [2]
  • Bacteriophage sp. [2]
  • Enterovirus a [2]
  • Adeno-associated dependoparvovirus a [1]
  • Alphapapillomavirus 10 [1]
  • Getah virus [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [22]
  • Helical reconstruction [1]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [4]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [2]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 250-500 kDa [3]
  • 500-1000 kDa [2]
  • 2-5 MDa [2]
  • 5-10 MDa [5]
  • > 10 MDa [1]

Release Date

  • 2025 [6]
  • 2024 [3]
  • 2023 [2]
  • 2022 [1]
  • 2021 [2]
  • 2020 [5]
  • 2019 [1]
  • 2017 [1]
  • 2016 [2]

Author by name

  • Cheng J [6]
  • Huang R [6]
  • Huang RK [6]
  • Krug PW [6]
  • Kwong PD [6]
  • Lang ZC [6]
  • Lei H [6]
  • Morton AJ [6]
  • Moss DL [6]
  • Pierson TC [6]
  • Pletnev S [6]
  • Ruckwardt TJ [6]
  • Shen C [6]
  • Shen CH [6]
  • Zhou T [6]
  • Zhang R [4]
  • Akopjana I [3]
  • Carazo JM [3]
  • Gomez-blanco J [3]
  • Hua C [3]
  • Jiang S [3]
  • Kazaks A [3]
  • Koning RI [3]
  • Koster AJ [3]
  • Lu L [3]
  • Sun F [3]
  • Tai L [3]
  • Tars K [3]
  • Vargas J [3]
  • Ye S [3]
  • Zhu Y [3]
  • Acharya P [2]
  • Alam SM [2]
  • Anasti K [2]
  • Armstrong E [2]
  • Belousoff MJ [2]
  • Bennett AL [2]
  • Bililign Y [2]
  • Binshtein E [2]
  • Bombardi R [2]
  • Bubphamala P [2]
  • Carnahan RH [2]
  • Coulibaly F [2]
  • Crowe JE [2]
  • Crowe Jr Je [2]
  • Diamond MS [2]
  • Dougan G [2]
  • Dunstan R [2]
  • Dunstan RA [2]
  • Durie CL [2]
  • Edwards R [2]
  • Fox J [2]
  • Fox JM [2]
  • Gilliland Jr T [2]
  • Gilliland T [2]
  • Grinter R [2]
  • Hardy JM [2]
  • Haynes BF [2]
  • Henderson R [2]
  • Kim AS [2]
  • Klimstra WB [2]
  • Kose N [2]
  • Kosheleva I [2]
  • Lithgow T [2]
  • Manosouri K [2]
  • Nargi RS [2]
  • Ohi M [2]
  • Ohi MD [2]
  • Pickard D [2]
  • Saunders C [2]
  • Saunders KO [2]
  • Shi H [2]
  • Sutton RE [2]
  • Sutton RM [2]
  • Venugopal H [2]
  • Walker LM [2]
  • Wang J [2]
  • Williams A [2]
  • Williamson LE [2]
  • Wu C [2]
  • Yadav PK [2]
  • Zhang X [2]
  • Chen J [1]
  • Chi X [1]
  • Gomez Blanco J [1]
  • Gu Y [1]
  • He M [1]
  • Kong Z [1]
  • Li B [1]
  • Li L [1]
  • Li S [1]
  • Li SW [1]
  • Liu X [1]
  • Liu XL [1]
  • Liu Y [1]
  • Lou Z [1]
  • Qian C [1]
  • Song S [1]
  • Sun ZZ [1]
  • Wang D [1]

Author by ORCID

  • Moss DL [6]
  • Cheng J [6]
  • Ruckwardt TJ [6]
  • Zhou T [6]
  • Lei H [6]
  • Krug PW [6]
  • Kwong PD [6]
  • Morton AJ [6]
  • Koning RI [3]
  • Vargas J [3]
  • Tars K [3]
  • Gomez-blanco J [3]
  • Koster AJ [3]
  • Kazaks A [3]
  • Venugopal H [2]
  • Wang J [2]
  • Manosouri K [2]
  • Saunders KO [2]
  • Bennett AL [2]
  • Acharya P [2]
  • Lithgow T [2]
  • Zhang X [2]
  • Anasti K [2]
  • Belousoff MJ [2]
  • Durie CL [2]
  • Henderson R [2]
  • Dunstan RA [2]
  • Haynes BF [2]
  • Hardy JM [2]
  • Grinter R [2]
  • Kosheleva I [2]
  • Yadav PK [2]
  • Alam SM [2]
  • Saunders C [2]
  • Ohi MD [2]
  • Binshtein E [2]
  • Coulibaly F [2]
  • Kim AS [2]
  • Edwards R [2]
  • Williams A [2]
  • Song S [1]
  • Li S [1]
  • Sun ZZ [1]
  • Liu X [1]
  • Wang M [1]
  • Zhang J [1]
  • Zheng Q [1]
  • Xia N [1]
  • Wang JF [1]
  • Lou Z [1]

Journal

  • COMMUN BIOL [6]
  • NAT COMMUN [5]
  • TO BE PUBLISHED [4]
  • CELL [2]
  • SCI ADV [2]
  • STRUCTURE [2]
  • EMERG MICROBES INFECT [1]
  • PLOS PATHOG [1]

Software

  • RELION [7]
  • GCTF [2]
  • SCIPION, XMIPP, CTFFIND3, RELION [2]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [18]
  • FEI TALOS ARCTICA [2]
  • FEI TECNAI F30 [1]
  • FEI TITAN [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [23]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [8]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • FEI FALCON II 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN K3 6K X 4K [3]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]

External links

  • PDB [13]
  • UniProt [13]
  • InterPro [10]
  • Pfam [10]
  • PDBe-Kb [9]
  • Gene Ontology [8]
  • EMPIAR [4]
  • AlphaFold DB [1]
Sort by: Download
Showing 1 - 10 of 23. Page 1 of 3
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EMD-45171
Download Map
3D View
Cryo-EM structure of EV-D68 B3 Virus-like particle
Release date: May 21, 2025
Resolution: 2.42 Å
EM Method: Single-particle
Fitted PDBs: 9c3j
Q-score: 0.555

Cheng J, Krug PW, Lei H, Moss DL, Lang ZC, Morton AJ, Shen CH, Pletnev S, Huang RK, Pierson TC, Zhou T, Ruckwardt TJ, Kwong PD

Commun Biol (2025) 8 pp. 860-860 [ DOI: doi:10.1038/s42003-025-08253-y Pubmed: 40467847 ]

EMD-45179
Download Map
3D View
Cryo-EM Structure of EV-D68 Vaccine Candidate - A2 Subclade Virus-like Particle
Release date: May 21, 2025
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 9c4a
Q-score: 0.562

Cheng J, Krug PW, Lei H, Moss DL, Lang ZC, Morton AJ, Shen CH, Pletnev S, Huang RK, Pierson TC, Zhou T, Ruckwardt TJ, Kwong PD

Commun Biol (2025) 8 pp. 860-860 [ DOI: doi:10.1038/s42003-025-08253-y Pubmed: 40467847 ]

EMD-45303
Download Map
3D View
Cryo-EM Structure of EV-D68 B3 A-Particle
Release date: May 21, 2025
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 9c8f
Q-score: 0.462

Cheng J, Krug PW, Lei H, Moss DL, Lang ZC, Morton AJ, Shen CH, Pletnev S, Huang RK, Pierson TC, Zhou T, Ruckwardt TJ, Kwong PD

Commun Biol (2025) 8 pp. 860-860 [ DOI: doi:10.1038/s42003-025-08253-y Pubmed: 40467847 ]

EMD-45304
Download Map
3D View
Cryo-EM Structure of EV-D68 A2 Inactivated Virus Particle
Release date: May 21, 2025
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 9c8g
Q-score: 0.528

Cheng J, Krug PW, Lei H, Moss DL, Lang ZC, Morton AJ, Shen CH, Pletnev S, Huang RK, Pierson TC, Zhou T, Ruckwardt TJ, Kwong PD

Commun Biol (2025) 8 pp. 860-860 [ DOI: doi:10.1038/s42003-025-08253-y Pubmed: 40467847 ]

EMD-45305
Download Map
3D View
Cryo-EM Structure of EV-D68 A2 A-Particle
Release date: May 21, 2025
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 9c8h
Q-score: 0.356

Cheng J, Krug PW, Lei H, Moss DL, Lang ZC, Morton AJ, Shen CH, Pletnev S, Huang RK, Pierson TC, Zhou T, Ruckwardt TJ, Kwong PD

Commun Biol (2025) 8 pp. 860-860 [ DOI: doi:10.1038/s42003-025-08253-y Pubmed: 40467847 ]

EMD-45306
Download Map
3D View
Cryo-EM Structure of EV-D68 B3 Inactivated Virus Particle
Release date: May 21, 2025
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 9c8i
Q-score: 0.497

Cheng J, Krug PW, Lei H, Moss DL, Lang ZC, Morton AJ, Shen CH, Pletnev S, Huang RK, Pierson TC, Zhou T, Ruckwardt TJ, Kwong PD

Commun Biol (2025) 8 pp. 860-860 [ DOI: doi:10.1038/s42003-025-08253-y Pubmed: 40467847 ]

EMD-40853
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3D View
CH505 Disulfide Stapled SOSIP Bound to b12 Fab
Release date: Feb. 14, 2024
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8sxi
Q-score: 0.371

Bennett AL, Edwards R, Kosheleva I, Saunders C, Bililign Y, Williams A, Bubphamala P, Manosouri K, Anasti K, Saunders KO, Alam SM, Haynes BF, Acharya P, Henderson R

Sci Adv (2024) 10 pp. eadj0396-eadj0396 [ Pubmed: 38306419 DOI: doi:10.1126/sciadv.adj0396 ]

EMD-40854
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3D View
CH505 Disulfide Stapled SOSIP Bound to CH235.12 Fab
Release date: Feb. 14, 2024
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8sxj
Q-score: 0.401

Bennett AL, Edwards R, Kosheleva I, Saunders C, Bililign Y, Williams A, Bubphamala P, Manosouri K, Anasti K, Saunders KO, Alam SM, Haynes BF, Acharya P, Henderson R

Sci Adv (2024) 10 pp. eadj0396-eadj0396 [ Pubmed: 38306419 DOI: doi:10.1126/sciadv.adj0396 ]

EMD-38289
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Cryo-EM structure of Adeno-associated Virus 9P31 in 1.76 angstrom.
Release date: Jan. 24, 2024
Resolution: 1.76 Å
EM Method: Single-particle
Fitted PDBs: 8xeg
Q-score: 0.56

Zhang R, Liu Y, Yu F, Xu G, Li L, Li B, Lou Z

PLoS Pathog (2024) 20 pp. e1011953-e1011953 [ Pubmed: 38315719 DOI: doi:10.1371/journal.ppat.1011953 ]

EMD-28627
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Cryo-EM structure of Coxsackievirus A10 empty embedded in crystalline ice
Release date: Jan. 11, 2023
Resolution: 3.1 Å
EM Method: Single-particle

Shi H, Wu C, Zhang X

Structure (2023) 31 pp. 213-220.e3 [ DOI: doi:10.1016/j.str.2022.12.001 Pubmed: 36586403 ]

Sort by: Download
Showing 1 - 10 of 23. Page 1 of 3
Display:
Statistics
×

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Preview first 10
Download

Filter By

Current Database

  • EMDB [23]

Current status

  • REL [23]

Sample type

  • Virus [23]
  • Protein [14]
  • Sample [2]
  • DNA [1]

Organism

  • Enterovirus d [6]
  • Escherichia phage ms2 [3]
  • Alphapapillomavirus 9 [3]
  • Eastern equine encephalitis virus [2]
  • Human immunodeficiency virus 1 [2]
  • 12059 [2]
  • Bacteriophage sp. [2]
  • Enterovirus a [2]
  • Adeno-associated dependoparvovirus a [1]
  • Alphapapillomavirus 10 [1]
  • Getah virus [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [22]
  • Helical reconstruction [1]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [4]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [2]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 250-500 kDa [3]
  • 500-1000 kDa [2]
  • 2-5 MDa [2]
  • 5-10 MDa [5]
  • > 10 MDa [1]

Release Date

  • 2025 [6]
  • 2024 [3]
  • 2023 [2]
  • 2022 [1]
  • 2021 [2]
  • 2020 [5]
  • 2019 [1]
  • 2017 [1]
  • 2016 [2]

Author by name

  • Cheng J [6]
  • Huang R [6]
  • Huang RK [6]
  • Krug PW [6]
  • Kwong PD [6]
  • Lang ZC [6]
  • Lei H [6]
  • Morton AJ [6]
  • Moss DL [6]
  • Pierson TC [6]
  • Pletnev S [6]
  • Ruckwardt TJ [6]
  • Shen C [6]
  • Shen CH [6]
  • Zhou T [6]
  • Zhang R [4]
  • Akopjana I [3]
  • Carazo JM [3]
  • Gomez-blanco J [3]
  • Hua C [3]
  • Jiang S [3]
  • Kazaks A [3]
  • Koning RI [3]
  • Koster AJ [3]
  • Lu L [3]
  • Sun F [3]
  • Tai L [3]
  • Tars K [3]
  • Vargas J [3]
  • Ye S [3]
  • Zhu Y [3]
  • Acharya P [2]
  • Alam SM [2]
  • Anasti K [2]
  • Armstrong E [2]
  • Belousoff MJ [2]
  • Bennett AL [2]
  • Bililign Y [2]
  • Binshtein E [2]
  • Bombardi R [2]
  • Bubphamala P [2]
  • Carnahan RH [2]
  • Coulibaly F [2]
  • Crowe JE [2]
  • Crowe Jr Je [2]
  • Diamond MS [2]
  • Dougan G [2]
  • Dunstan R [2]
  • Dunstan RA [2]
  • Durie CL [2]
  • Edwards R [2]
  • Fox J [2]
  • Fox JM [2]
  • Gilliland Jr T [2]
  • Gilliland T [2]
  • Grinter R [2]
  • Hardy JM [2]
  • Haynes BF [2]
  • Henderson R [2]
  • Kim AS [2]
  • Klimstra WB [2]
  • Kose N [2]
  • Kosheleva I [2]
  • Lithgow T [2]
  • Manosouri K [2]
  • Nargi RS [2]
  • Ohi M [2]
  • Ohi MD [2]
  • Pickard D [2]
  • Saunders C [2]
  • Saunders KO [2]
  • Shi H [2]
  • Sutton RE [2]
  • Sutton RM [2]
  • Venugopal H [2]
  • Walker LM [2]
  • Wang J [2]
  • Williams A [2]
  • Williamson LE [2]
  • Wu C [2]
  • Yadav PK [2]
  • Zhang X [2]
  • Chen J [1]
  • Chi X [1]
  • Gomez Blanco J [1]
  • Gu Y [1]
  • He M [1]
  • Kong Z [1]
  • Li B [1]
  • Li L [1]
  • Li S [1]
  • Li SW [1]
  • Liu X [1]
  • Liu XL [1]
  • Liu Y [1]
  • Lou Z [1]
  • Qian C [1]
  • Song S [1]
  • Sun ZZ [1]
  • Wang D [1]

Author by ORCID

  • Moss DL [6]
  • Cheng J [6]
  • Ruckwardt TJ [6]
  • Zhou T [6]
  • Lei H [6]
  • Krug PW [6]
  • Kwong PD [6]
  • Morton AJ [6]
  • Koning RI [3]
  • Vargas J [3]
  • Tars K [3]
  • Gomez-blanco J [3]
  • Koster AJ [3]
  • Kazaks A [3]
  • Venugopal H [2]
  • Wang J [2]
  • Manosouri K [2]
  • Saunders KO [2]
  • Bennett AL [2]
  • Acharya P [2]
  • Lithgow T [2]
  • Zhang X [2]
  • Anasti K [2]
  • Belousoff MJ [2]
  • Durie CL [2]
  • Henderson R [2]
  • Dunstan RA [2]
  • Haynes BF [2]
  • Hardy JM [2]
  • Grinter R [2]
  • Kosheleva I [2]
  • Yadav PK [2]
  • Alam SM [2]
  • Saunders C [2]
  • Ohi MD [2]
  • Binshtein E [2]
  • Coulibaly F [2]
  • Kim AS [2]
  • Edwards R [2]
  • Williams A [2]
  • Song S [1]
  • Li S [1]
  • Sun ZZ [1]
  • Liu X [1]
  • Wang M [1]
  • Zhang J [1]
  • Zheng Q [1]
  • Xia N [1]
  • Wang JF [1]
  • Lou Z [1]

Journal

  • COMMUN BIOL [6]
  • NAT COMMUN [5]
  • TO BE PUBLISHED [4]
  • CELL [2]
  • SCI ADV [2]
  • STRUCTURE [2]
  • EMERG MICROBES INFECT [1]
  • PLOS PATHOG [1]

Software

  • RELION [7]
  • GCTF [2]
  • SCIPION, XMIPP, CTFFIND3, RELION [2]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [18]
  • FEI TALOS ARCTICA [2]
  • FEI TECNAI F30 [1]
  • FEI TITAN [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [23]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [8]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • FEI FALCON II 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN K3 6K X 4K [3]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]

External links

  • PDB [13]
  • UniProt [13]
  • InterPro [10]
  • Pfam [10]
  • PDBe-Kb [9]
  • Gene Ontology [8]
  • EMPIAR [4]
  • AlphaFold DB [1]