Electron Microscopy Data Bank

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Current Database

Current status

Sample type

Organism

Homo sapiens [122]
Chaetomium thermophilum [26]
Escherichia coli [25]
Escherichia coli [18]
Synthetic construct [16]
Saccharomyces cerevisiae [16]
Arabidopsis thaliana [13]
Saccharomyces cerevisiae [13]
Rattus norvegicus [12]
Trypanosoma brucei [11]
Human immunodeficiency virus 1 [10]
Bos taurus [9]
Xenopus laevis [8]
Mus musculus [7]
Human cytomegalovirus [7]
Hepatitis b virus [5]
Schizosaccharomyces pombe [5]
Euglena gracilis [4]
Mycobacterium tuberculosis [4]
Japanese encephalitis virus [3]
Rabbit hemorrhagic disease virus [3]
Staphylococcus aureus [3]
Chaetomium thermophilum [3]
Severe acute respiratory syndrome coronavirus [3]
Schizosaccharomyces pombe [3]
Human cytomegalovirus [3]
Primate t-lymphotropic virus 1 [3]
(no species) [3]
Escherichia coli [3]
Yersinia entomophaga [3]
Escherichia coli [2]
Mycobacterium tuberculosis [2]
Aquareovirus c [2]
Chlamydomonas reinhardtii [2]
Mayaro virus [2]
Mayaro virus [2]
Hordeum vulgare [2]
Lama glama [2]
Escherichia coli [1]
Epstein-barr virus (strain gd1) [1]
Influenza a virus [1]
Pseudomonas phage pp7 [1]
Saccharomyces cerevisiae [1]
(no species) [1]
Clostridium botulinum [1]
Ciona robusta [1]
Nostoc phage a1 [1]
Pseudomonas aeruginosa [1]
Leptolinea tardivitalis [1]
Xenoacremonium brunneosporum [1]
Dna molecule [1]
Pseudomonas aeruginosa [1]
Moovirus moo [1]
Phietavirus pv52a [1]
Dubowvirus dv80alpha [1]
Trypanosoma cruzi [1]
(no species) [1]
Conus kinoshitai [1]
Hordeum vulgare [1]
Xenopus calcaratus [1]
Acinetobacter baumannii [1]
Neurospora crassa [1]
Trypanosoma brucei [1]
Trypanosoma cruzi [1]
Saccharomyces cerevisiae [1]
Toxoplasma gondii [1]
Spodoptera frugiperda [1]
Escherichia coli [1]
Salmonella enterica [1]
Oryctolagus cuniculus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Zhang Y [25]
Klinge S [24]
Vanden Broeck A [24]
Li Y [20]
Chen Y [19]
Zhang X [19]
Hurt E [17]
Li N [16]
Cheng J [15]
Gao N [15]
Pedersen BP [15]
Stokes DL [15]
Wang Y [15]
Kellner N [14]
Larsen C [14]
Schlame M [14]
Sweet ME [14]
Beckmann R [13]
Hanelt I [13]
Hielkema L [13]
Lau B [13]
Liang X [13]
Liu X [13]
Ma C [13]
Paulino C [13]
Stock C [13]
Zhou Q [13]
Denk T [12]
Fischer P [12]
Flemming D [12]
Li X [12]
Muhleip A [12]
Thoms M [12]
Amunts A [11]
Berninghausen O [11]
Corey RA [11]
Gahura O [11]
Hierro-yap C [11]
Hollaus D [11]
Jain M [11]
Luo S [11]
Muehleip A [11]
Panicucci B [11]
Silberberg JM [11]
Slapnickova M [11]
Stansfeld PJ [11]
Wunnicke D [11]
Zikova A [11]
Falquet L [10]
Fromm L [10]
Patel N [10]
Sinning I [10]
Wild K [10]
De Angeli A [9]
Demes-causse E [9]
Dubach VRA [9]
Haenelt I [9]
Hwang GS [9]
Jang SY [9]
Jaslan J [9]
Jung S [9]
Lee S [9]
Lee Y [9]
Rheinberger J [9]
Yoo J [9]
Akashi T [8]
Asada H [8]
Briggs JAG [8]
Glass B [8]
Hiraizumi M [8]
Hisano H [8]
Imazu T [8]
Inui Y [8]
Iwata S [8]
Kraeusslich HG [8]
Krausslich HG [8]
Kumanomidou T [8]
Kusakizako T [8]
Mattei S [8]
Miyaguchi I [8]
Mueller B [8]
Muller B [8]
Nishizawa T [8]
Nureki O [8]
Sasaki W [8]
Takahashi T [8]
Tan A [8]
Tan AWK [8]
Todoroki H [8]
Wang C [8]
Xu HE [8]
Afanasyev P [7]
Arthur CP [7]
Bachmann P [7]
Boehringer D [7]
Ciferri C [7]
Demo G [7]
Gaubitz C [7]
Glockshuber R [7]
Hayes JA [7]

Author by ORCID

Hurt E [2]
Lau B [2]
Chen FX [2]
Li Y [2]
Song A [2]
Cheng J [2]
Calder LJ [1]
Schmiege P [1]
Pajak J [1]
Chen Q [1]
Guo Y [1]
He X [1]
Li N [1]
Xia X [1]
Li X [1]
Grimm C [1]
Rosenthal PB [1]
Jaslan D [1]
Jiang Y [1]
Elghobashi-meinhardt N [1]
Kelch Phd Ba [1]
Zhuang Y [1]
Zhang Y [1]
Akashi T [1]
Li Y [1]
Davies JR [1]
Demo G [1]
Stone NP [1]
Gaubitz C [1]
Zhou Q [1]
Liu X [1]
Xu HE [1]
Yin W [1]
Yan R [1]
Liu X [1]
Masuyer G [1]
Hiraizumi M [1]
Miyaguchi I [1]
Martinez-carranza M [1]
Iwata S [1]
Nureki O [1]
Xie X [1]
Xia L [1]
Gao N [1]
Li Y [1]
Xu P [1]
Tolar P [1]
Stenmark P [1]
Imazu T [1]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

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Showing 1 - 10 of 309. Page 1 of 31

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EMD-60965

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Cryo-EM structure of Cas12X2 with crRNA

CryoEM

Release date: Feb. 4, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9ix6

Xi Z

To Be Published

EMD-46791

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Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion RECC1 , composite map

Composite map

CryoEM

Release date: Jan. 21, 2026
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 9dei
Q-score: 0.495

Liu YT, Vacas AF, Jih J, Zhao X, Yu C, Lee JKJ, Suematsu T, Solayman M, Wang H, Wang X, Huang L, Zhang L, Aphasizheva I, Zhou ZH, Aphasizhev R

To Be Published

EMD-45190

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Yersinia entomophaga holotoxin complex in prepore conformation

CryoEM

Release date: Dec. 31, 2025
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 9c4k
Q-score: 0.267

Low YS, Roche SG, Aleksandrova NA, Foley G, Low JK, Box JK, Croll TI, Chassagnon IR, Lott JS, Deplazes E, Boden M, Hurst MR, Piper SJ, Landsberg MJ

Nat Commun (2025) 16 pp. 11121-11121 [ Pubmed: 41397958 DOI: doi:10.1038/s41467-025-66050-x ]

EMD-45422

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Yersinia entomophaga holotoxin complex in pore conformation

CryoEM

Release date: Dec. 31, 2025
Resolution: 6.43 Å
EM Method: Single-particle
Fitted PDBs: 9cbc
Q-score: 0.264

Low YS, Roche SG, Aleksandrova NA, Foley G, Low JK, Box JK, Croll TI, Chassagnon IR, Lott JS, Deplazes E, Boden M, Hurst MR, Piper SJ, Landsberg MJ

Nat Commun (2025) 16 pp. 11121-11121 [ Pubmed: 41397958 DOI: doi:10.1038/s41467-025-66050-x ]

EMD-52281

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Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Release date: Dec. 17, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9hlz

Bridgers JB, Carlstrom A, Sherpa D, Couvillion MT, Rovsnik U, Gao J, Wan B, Shao S, Ott M, Churchman LS

Nat Struct Mol Biol (2026) 33 pp. 245-258 [ Pubmed: 41339860 DOI: doi:10.1038/s41594-025-01726-y ]

EMD-52576

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High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

CryoEM

Release date: Dec. 17, 2025
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 9i1w

Wild K, Klein M, Burkard A, Marchand V, Kellner N, Paez A, Pastore S, Butto T, Motorin Y, Helm M, Sinning I

Nucleic Acids Res (2025) 53 [ Pubmed: 41432034 DOI: doi:10.1093/nar/gkaf1368 ]

EMD-62627

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Structure of human B0AT1-ACE2 complex with compound1

CryoEM

Release date: Dec. 10, 2025
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9kxt
Q-score: 0.57

Imazu T, Akashi T, Hiraizumi M, Inui Y, Sasaki W, Takahashi T, Todoroki H, Kumanomidou T, Hisano H, Asada H, Kusakizako T, Nishizawa T, Iwata S, Nureki O, Miyaguchi I

To Be Published

EMD-62628

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Structure of human B0AT1-ACE2 complex with compound 2

CryoEM

Release date: Dec. 10, 2025
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 9kxu
Q-score: 0.544

Imazu T, Akashi T, Hiraizumi M, Inui Y, Sasaki W, Takahashi T, Todoroki H, Kumanomidou T, Hisano H, Asada H, Kusakizako T, Nishizawa T, Iwata S, Nureki O, Miyaguchi I

To Be Published

EMD-62629

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Structure of human B0AT1-ACE2 complex with compound3

CryoEM

Release date: Dec. 10, 2025
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 9kxv
Q-score: 0.594

Imazu T, Akashi T, Hiraizumi M, Inui Y, Sasaki W, Takahashi T, Todoroki H, Kumanomidou T, Hisano H, Asada H, Kusakizako T, Nishizawa T, Iwata S, Nureki O, Miyaguchi I

To Be Published

EMD-62630

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3D View

Structure of human B0AT1-ACE2

CryoEM

Release date: Dec. 10, 2025
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 9kxw
Q-score: 0.586

Imazu T, Akashi T, Hiraizumi M, Inui Y, Sasaki W, Takahashi T, Todoroki H, Kumanomidou T, Hisano H, Asada H, Kusakizako T, Nishizawa T, Iwata S, Nureki O, Miyaguchi I

To Be Published

Sort by: Download

Showing 1 - 10 of 309. Page 1 of 31

Display:

Statistics

Download

Select database:

EMDB [305]
EMPIAR [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [122]
Chaetomium thermophilum [26]
Escherichia coli [25]
Escherichia coli [18]
Synthetic construct [16]
Saccharomyces cerevisiae [16]
Arabidopsis thaliana [13]
Saccharomyces cerevisiae [13]
Rattus norvegicus [12]
Trypanosoma brucei [11]
Human immunodeficiency virus 1 [10]
Bos taurus [9]
Xenopus laevis [8]
Mus musculus [7]
Human cytomegalovirus [7]
Hepatitis b virus [5]
Schizosaccharomyces pombe [5]
Euglena gracilis [4]
Mycobacterium tuberculosis [4]
Japanese encephalitis virus [3]
Rabbit hemorrhagic disease virus [3]
Staphylococcus aureus [3]
Chaetomium thermophilum [3]
Severe acute respiratory syndrome coronavirus [3]
Schizosaccharomyces pombe [3]
Human cytomegalovirus [3]
Primate t-lymphotropic virus 1 [3]
(no species) [3]
Escherichia coli [3]
Yersinia entomophaga [3]
Escherichia coli [2]
Mycobacterium tuberculosis [2]
Aquareovirus c [2]
Chlamydomonas reinhardtii [2]
Mayaro virus [2]
Mayaro virus [2]
Hordeum vulgare [2]
Lama glama [2]
Escherichia coli [1]
Epstein-barr virus (strain gd1) [1]
Influenza a virus [1]
Pseudomonas phage pp7 [1]
Saccharomyces cerevisiae [1]
(no species) [1]
Clostridium botulinum [1]
Ciona robusta [1]
Nostoc phage a1 [1]
Pseudomonas aeruginosa [1]
Leptolinea tardivitalis [1]
Xenoacremonium brunneosporum [1]
Dna molecule [1]
Pseudomonas aeruginosa [1]
Moovirus moo [1]
Phietavirus pv52a [1]
Dubowvirus dv80alpha [1]
Trypanosoma cruzi [1]
(no species) [1]
Conus kinoshitai [1]
Hordeum vulgare [1]
Xenopus calcaratus [1]
Acinetobacter baumannii [1]
Neurospora crassa [1]
Trypanosoma brucei [1]
Trypanosoma cruzi [1]
Saccharomyces cerevisiae [1]
Toxoplasma gondii [1]
Spodoptera frugiperda [1]
Escherichia coli [1]
Salmonella enterica [1]
Oryctolagus cuniculus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Zhang Y [25]
Klinge S [24]
Vanden Broeck A [24]
Li Y [20]
Chen Y [19]
Zhang X [19]
Hurt E [17]
Li N [16]
Cheng J [15]
Gao N [15]
Pedersen BP [15]
Stokes DL [15]
Wang Y [15]
Kellner N [14]
Larsen C [14]
Schlame M [14]
Sweet ME [14]
Beckmann R [13]
Hanelt I [13]
Hielkema L [13]
Lau B [13]
Liang X [13]
Liu X [13]
Ma C [13]
Paulino C [13]
Stock C [13]
Zhou Q [13]
Denk T [12]
Fischer P [12]
Flemming D [12]
Li X [12]
Muhleip A [12]
Thoms M [12]
Amunts A [11]
Berninghausen O [11]
Corey RA [11]
Gahura O [11]
Hierro-yap C [11]
Hollaus D [11]
Jain M [11]
Luo S [11]
Muehleip A [11]
Panicucci B [11]
Silberberg JM [11]
Slapnickova M [11]
Stansfeld PJ [11]
Wunnicke D [11]
Zikova A [11]
Falquet L [10]
Fromm L [10]
Patel N [10]
Sinning I [10]
Wild K [10]
De Angeli A [9]
Demes-causse E [9]
Dubach VRA [9]
Haenelt I [9]
Hwang GS [9]
Jang SY [9]
Jaslan J [9]
Jung S [9]
Lee S [9]
Lee Y [9]
Rheinberger J [9]
Yoo J [9]
Akashi T [8]
Asada H [8]
Briggs JAG [8]
Glass B [8]
Hiraizumi M [8]
Hisano H [8]
Imazu T [8]
Inui Y [8]
Iwata S [8]
Kraeusslich HG [8]
Krausslich HG [8]
Kumanomidou T [8]
Kusakizako T [8]
Mattei S [8]
Miyaguchi I [8]
Mueller B [8]
Muller B [8]
Nishizawa T [8]
Nureki O [8]
Sasaki W [8]
Takahashi T [8]
Tan A [8]
Tan AWK [8]
Todoroki H [8]
Wang C [8]
Xu HE [8]
Afanasyev P [7]
Arthur CP [7]
Bachmann P [7]
Boehringer D [7]
Ciferri C [7]
Demo G [7]
Gaubitz C [7]
Glockshuber R [7]
Hayes JA [7]

Author by ORCID

Hurt E [2]
Lau B [2]
Chen FX [2]
Li Y [2]
Song A [2]
Cheng J [2]
Calder LJ [1]
Schmiege P [1]
Pajak J [1]
Chen Q [1]
Guo Y [1]
He X [1]
Li N [1]
Xia X [1]
Li X [1]
Grimm C [1]
Rosenthal PB [1]
Jaslan D [1]
Jiang Y [1]
Elghobashi-meinhardt N [1]
Kelch Phd Ba [1]
Zhuang Y [1]
Zhang Y [1]
Akashi T [1]
Li Y [1]
Davies JR [1]
Demo G [1]
Stone NP [1]
Gaubitz C [1]
Zhou Q [1]
Liu X [1]
Xu HE [1]
Yin W [1]
Yan R [1]
Liu X [1]
Masuyer G [1]
Hiraizumi M [1]
Miyaguchi I [1]
Martinez-carranza M [1]
Iwata S [1]
Nureki O [1]
Xie X [1]
Xia L [1]
Gao N [1]
Li Y [1]
Xu P [1]
Tolar P [1]
Stenmark P [1]
Imazu T [1]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links