Electron Microscopy Data Bank

Edit your search query here and hit Return to execute it:

STL

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [150]
Escherichia coli [29]
Chaetomium thermophilum [27]
Saccharomyces cerevisiae [23]
Saccharomyces cerevisiae [23]
Escherichia coli [20]
Synthetic construct [19]
Arabidopsis thaliana [13]
Rattus norvegicus [12]
Unidentified adenovirus [12]
Trypanosoma brucei [11]
Human immunodeficiency virus 1 [10]
Bos taurus [9]
Xenopus laevis [8]
Mus musculus [7]
Human cytomegalovirus [7]
Hepatitis b virus [5]
Schizosaccharomyces pombe [5]
Euglena gracilis [4]
Mycobacterium tuberculosis [4]
Japanese encephalitis virus [3]
Rabbit hemorrhagic disease virus [3]
Staphylococcus aureus [3]
Chaetomium thermophilum [3]
Severe acute respiratory syndrome coronavirus [3]
Schizosaccharomyces pombe [3]
Human cytomegalovirus [3]
Chlamydomonas reinhardtii [3]
Primate t-lymphotropic virus 1 [3]
(no species) [3]
Escherichia coli [3]
Yersinia entomophaga [3]
Escherichia coli [2]
Human mastadenovirus c [2]
Mycobacterium tuberculosis [2]
Aquareovirus c [2]
Mayaro virus [2]
Mayaro virus [2]
Caenorhabditis elegans [2]
Hordeum vulgare [2]
Lama glama [2]
Escherichia coli [1]
Epstein-barr virus (strain gd1) [1]
Pseudomonas phage pp7 [1]
Saccharomyces cerevisiae [1]
(no species) [1]
Clostridium botulinum [1]
Ciona robusta [1]
Nostoc phage a1 [1]
Pseudomonas aeruginosa [1]
Leptolinea tardivitalis [1]
Xenoacremonium brunneosporum [1]
Dna molecule [1]
Pseudomonas aeruginosa [1]
Moovirus moo [1]
Phietavirus pv52a [1]
Dubowvirus dv80alpha [1]
Trypanosoma cruzi [1]
(no species) [1]
Conus kinoshitai [1]
Hordeum vulgare [1]
Xenopus calcaratus [1]
Acinetobacter baumannii [1]
Neurospora crassa [1]
Trypanosoma brucei [1]
Trypanosoma cruzi [1]
Saccharomyces cerevisiae [1]
Toxoplasma gondii [1]
Spodoptera frugiperda [1]
Escherichia coli [1]
Salmonella enterica [1]
Oryctolagus cuniculus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Zhang X [34]
Shi Y [25]
Zhang Y [25]
Klinge S [24]
Vanden Broeck A [24]
Li Y [21]
Pedersen BP [20]
Stokes DL [20]
Chen Y [19]
Hurt E [18]
Yan C [18]
Zhan X [18]
Cheng J [16]
Li N [16]
Lu Y [16]
Gao N [15]
Wang Y [15]
Kellner N [14]
Larsen C [14]
Lau B [14]
Lei J [14]
Schlame M [14]
Sweet ME [14]
Zhou Q [14]
Beckmann R [13]
Fischer P [13]
Hanelt I [13]
Hielkema L [13]
Li X [13]
Liang X [13]
Liu X [13]
Ma C [13]
Paulino C [13]
Stock C [13]
Urlaub H [13]
Denk T [12]
Flemming D [12]
Muhleip A [12]
Thoms M [12]
Amunts A [11]
Berninghausen O [11]
Corey RA [11]
Gahura O [11]
Hierro-yap C [11]
Hollaus D [11]
Jain M [11]
Luo S [11]
Muehleip A [11]
Panicucci B [11]
Silberberg JM [11]
Slapnickova M [11]
Stansfeld PJ [11]
Wunnicke D [11]
Zikova A [11]
Dybkov O [10]
Falquet L [10]
Fromm L [10]
Patel N [10]
Sinning I [10]
Wild K [10]
De Angeli A [9]
Demes-causse E [9]
Dubach VRA [9]
Haenelt I [9]
Hwang GS [9]
Jang SY [9]
Jaslan J [9]
Jung S [9]
Lee S [9]
Lee Y [9]
Luhrmann R [9]
Rheinberger J [9]
Yoo J [9]
Akashi T [8]
Asada H [8]
Bai R [8]
Briggs JAG [8]
Glass B [8]
Hiraizumi M [8]
Hisano H [8]
Imazu T [8]
Inui Y [8]
Iwata S [8]
Kastner B [8]
Kraeusslich HG [8]
Krausslich HG [8]
Kumanomidou T [8]
Kusakizako T [8]
Mattei S [8]
Miyaguchi I [8]
Mueller B [8]
Muller B [8]
Nishizawa T [8]
Nureki O [8]
Sasaki W [8]
Takahashi T [8]
Tan A [8]
Tan AWK [8]
Todoroki H [8]
Wan R [8]

Author by ORCID

Klinge S [24]
Vanden Broeck A [24]
Stokes DL [19]
Pedersen BP [19]
Hurt E [18]
Zhan X [17]
Gao N [15]
Lau B [14]
Cheng J [14]
Kellner N [14]
Stock C [13]
Paulino C [13]
Hielkema L [13]
Li N [13]
Hanelt I [13]
Beckmann R [13]
Thoms M [12]
Denk T [12]
Flemming D [12]
Muhleip A [12]
Hollaus D [11]
Yan C [11]
Jain M [11]
Gahura O [11]
Li Y [11]
Amunts A [11]
Zikova A [11]
Silberberg JM [11]
Corey RA [11]
Shi Y [11]
Falquet L [10]
Sinning I [10]
Fromm L [10]
Jang SY [9]
Hwang GS [9]
Jaslan J [9]
Dubach VRA [9]
Lee Y [9]
Rheinberger J [9]
De Angeli A [9]
Lee S [9]
Jung S [9]
Yoo J [9]
Muller B [8]
Wild K [8]
Mattei S [8]
Tan A [8]
Krausslich HG [8]
Briggs JAG [8]
Pajak J [7]
Johnson MC [7]
Demo G [7]
Stone NP [7]
Gaubitz C [7]
Afanasyev P [7]
Boehringer D [7]
Xu HE [7]
Liu X [7]
Glockshuber R [7]
Bachmann P [7]
Wang MW [6]
Ishiguro K [6]
Fica SM [6]
Xia X [6]
Liu X [6]
Shirouzu M [6]
Fujimura A [6]
Yang D [6]
Zhang X [5]
Calder LJ [5]
Chen Q [5]
Hussein AK [5]
Oubridge C [5]
Galej WP [5]
Li X [5]
Rosenthal PB [5]
Villones RLE [5]
Kelch Phd Ba [5]
Lindkvist-petersson K [5]
Wang K [5]
Li P [5]
Gourdon P [5]
Li Y [5]
Xu P [5]
Tolar P [5]
Meloni G [5]
Dybkov O [4]
Guo Y [4]
Fiedorczuk K [4]
Wang Y [4]
Patel N [4]
Arthur CP [4]
Ciferri C [4]
Kim HJ [4]
Elghobashi-meinhardt N [4]
Kisonaite M [4]
Zhou L [4]
Ho H [4]
Murakami K [4]
Dienemann C [4]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

Sort by: Download

Showing 1 - 10 of 361. Page 1 of 37

Display:

Statistics

Download

Select database:

EMDB [357]
EMPIAR [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

EMD-53554

Download Map

3D View

Cryo-EM structure of the human pre-Bact-OTS complex whole map

CryoEM

Release date: May 13, 2026
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 9r3d
Q-score: 0.451

Zhang Z, Kumar V, Dybkov O, Zhong J, Kastner B, Henning U, Luehrmann R

To Be Published

EMD-74910

Download Map

3D View

High-resolution cryo-EM structure of KdpFABC in the E1 state in lipid nanodisc

CryoEM

Release date: April 1, 2026
Resolution: 2.34 Å
EM Method: Single-particle
Fitted PDBs: 9zwk
Q-score: 0.514

Hussein AK, Zhang X, Pedersen BP, Stokes DL

To Be Published

EMD-74911

Download Map

3D View

High-resolution cryo-EM structure of KdpFABC in the E1-ATP state in lipid nanodisc

CryoEM

Release date: April 1, 2026
Resolution: 2.28 Å
EM Method: Single-particle
Fitted PDBs: 9zwl
Q-score: 0.573

Hussein AK, Zhang X, Pedersen BP, Stokes DL

To Be Published

EMD-74912

Download Map

3D View

High-resolution cryo-EM structure of KdpFABC in the E1P state in lipid nanodisc

CryoEM

Release date: April 1, 2026
Resolution: 2.25 Å
EM Method: Single-particle
Fitted PDBs: 9zwm
Q-score: 0.576

Hussein AK, Zhang X, Pedersen BP, Stokes DL

To Be Published

EMD-74913

Download Map

3D View

High-resolution cryo-EM structure of KdpFABC in the E2P state in lipid nanodisc

CryoEM

Release date: April 1, 2026
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 9zwn
Q-score: 0.493

Hussein AK, Zhang X, Pedersen BP, Stokes DL

To Be Published

EMD-74914

Download Map

3D View

High-resolution cryo-EM structure of KdpFABC in the E2 state in lipid nanodisc

CryoEM

Release date: April 1, 2026
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 9zwo
Q-score: 0.498

Hussein AK, Zhang X, Pedersen BP, Stokes DL

To Be Published

EMD-60965

Download Map

3D View

Cryo-EM structure of Cas12X2 with crRNA

CryoEM

Release date: Feb. 4, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9ix6
Q-score: 0.382

Xi Z

To Be Published

EMD-46791

Download Map

3D View

Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion RECC1 , composite map

Composite map

CryoEM

Release date: Jan. 21, 2026
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 9dei
Q-score: 0.495

Liu YT, Vacas AF, Jih J, Zhao X, Yu C, Lee JKJ, Suematsu T, Solayman M, Wang H, Wang X, Huang L, Zhang L, Aphasizheva I, Zhou ZH, Aphasizhev R

To Be Published

EMD-45190

Download Map

3D View

Yersinia entomophaga holotoxin complex in prepore conformation

CryoEM

Release date: Dec. 31, 2025
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 9c4k
Q-score: 0.267

Low YS, Roche SG, Aleksandrova NA, Foley G, Low JK, Box JK, Croll TI, Chassagnon IR, Lott JS, Deplazes E, Boden M, Hurst MR, Piper SJ, Landsberg MJ

Nat Commun (2025) 16 pp. 11121-11121 [ DOI: doi:10.1038/s41467-025-66050-x Pubmed: 41397958 ]

EMD-45422

Download Map

3D View

Yersinia entomophaga holotoxin complex in pore conformation

CryoEM

Release date: Dec. 31, 2025
Resolution: 6.43 Å
EM Method: Single-particle
Fitted PDBs: 9cbc
Q-score: 0.264

Low YS, Roche SG, Aleksandrova NA, Foley G, Low JK, Box JK, Croll TI, Chassagnon IR, Lott JS, Deplazes E, Boden M, Hurst MR, Piper SJ, Landsberg MJ

Nat Commun (2025) 16 pp. 11121-11121 [ DOI: doi:10.1038/s41467-025-66050-x Pubmed: 41397958 ]

Sort by: Download

Showing 1 - 10 of 361. Page 1 of 37

Display:

Statistics

Download

Select database:

EMDB [357]
EMPIAR [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [150]
Escherichia coli [29]
Chaetomium thermophilum [27]
Saccharomyces cerevisiae [23]
Saccharomyces cerevisiae [23]
Escherichia coli [20]
Synthetic construct [19]
Arabidopsis thaliana [13]
Rattus norvegicus [12]
Unidentified adenovirus [12]
Trypanosoma brucei [11]
Human immunodeficiency virus 1 [10]
Bos taurus [9]
Xenopus laevis [8]
Mus musculus [7]
Human cytomegalovirus [7]
Hepatitis b virus [5]
Schizosaccharomyces pombe [5]
Euglena gracilis [4]
Mycobacterium tuberculosis [4]
Japanese encephalitis virus [3]
Rabbit hemorrhagic disease virus [3]
Staphylococcus aureus [3]
Chaetomium thermophilum [3]
Severe acute respiratory syndrome coronavirus [3]
Schizosaccharomyces pombe [3]
Human cytomegalovirus [3]
Chlamydomonas reinhardtii [3]
Primate t-lymphotropic virus 1 [3]
(no species) [3]
Escherichia coli [3]
Yersinia entomophaga [3]
Escherichia coli [2]
Human mastadenovirus c [2]
Mycobacterium tuberculosis [2]
Aquareovirus c [2]
Mayaro virus [2]
Mayaro virus [2]
Caenorhabditis elegans [2]
Hordeum vulgare [2]
Lama glama [2]
Escherichia coli [1]
Epstein-barr virus (strain gd1) [1]
Pseudomonas phage pp7 [1]
Saccharomyces cerevisiae [1]
(no species) [1]
Clostridium botulinum [1]
Ciona robusta [1]
Nostoc phage a1 [1]
Pseudomonas aeruginosa [1]
Leptolinea tardivitalis [1]
Xenoacremonium brunneosporum [1]
Dna molecule [1]
Pseudomonas aeruginosa [1]
Moovirus moo [1]
Phietavirus pv52a [1]
Dubowvirus dv80alpha [1]
Trypanosoma cruzi [1]
(no species) [1]
Conus kinoshitai [1]
Hordeum vulgare [1]
Xenopus calcaratus [1]
Acinetobacter baumannii [1]
Neurospora crassa [1]
Trypanosoma brucei [1]
Trypanosoma cruzi [1]
Saccharomyces cerevisiae [1]
Toxoplasma gondii [1]
Spodoptera frugiperda [1]
Escherichia coli [1]
Salmonella enterica [1]
Oryctolagus cuniculus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Zhang X [34]
Shi Y [25]
Zhang Y [25]
Klinge S [24]
Vanden Broeck A [24]
Li Y [21]
Pedersen BP [20]
Stokes DL [20]
Chen Y [19]
Hurt E [18]
Yan C [18]
Zhan X [18]
Cheng J [16]
Li N [16]
Lu Y [16]
Gao N [15]
Wang Y [15]
Kellner N [14]
Larsen C [14]
Lau B [14]
Lei J [14]
Schlame M [14]
Sweet ME [14]
Zhou Q [14]
Beckmann R [13]
Fischer P [13]
Hanelt I [13]
Hielkema L [13]
Li X [13]
Liang X [13]
Liu X [13]
Ma C [13]
Paulino C [13]
Stock C [13]
Urlaub H [13]
Denk T [12]
Flemming D [12]
Muhleip A [12]
Thoms M [12]
Amunts A [11]
Berninghausen O [11]
Corey RA [11]
Gahura O [11]
Hierro-yap C [11]
Hollaus D [11]
Jain M [11]
Luo S [11]
Muehleip A [11]
Panicucci B [11]
Silberberg JM [11]
Slapnickova M [11]
Stansfeld PJ [11]
Wunnicke D [11]
Zikova A [11]
Dybkov O [10]
Falquet L [10]
Fromm L [10]
Patel N [10]
Sinning I [10]
Wild K [10]
De Angeli A [9]
Demes-causse E [9]
Dubach VRA [9]
Haenelt I [9]
Hwang GS [9]
Jang SY [9]
Jaslan J [9]
Jung S [9]
Lee S [9]
Lee Y [9]
Luhrmann R [9]
Rheinberger J [9]
Yoo J [9]
Akashi T [8]
Asada H [8]
Bai R [8]
Briggs JAG [8]
Glass B [8]
Hiraizumi M [8]
Hisano H [8]
Imazu T [8]
Inui Y [8]
Iwata S [8]
Kastner B [8]
Kraeusslich HG [8]
Krausslich HG [8]
Kumanomidou T [8]
Kusakizako T [8]
Mattei S [8]
Miyaguchi I [8]
Mueller B [8]
Muller B [8]
Nishizawa T [8]
Nureki O [8]
Sasaki W [8]
Takahashi T [8]
Tan A [8]
Tan AWK [8]
Todoroki H [8]
Wan R [8]

Author by ORCID

Klinge S [24]
Vanden Broeck A [24]
Stokes DL [19]
Pedersen BP [19]
Hurt E [18]
Zhan X [17]
Gao N [15]
Lau B [14]
Cheng J [14]
Kellner N [14]
Stock C [13]
Paulino C [13]
Hielkema L [13]
Li N [13]
Hanelt I [13]
Beckmann R [13]
Thoms M [12]
Denk T [12]
Flemming D [12]
Muhleip A [12]
Hollaus D [11]
Yan C [11]
Jain M [11]
Gahura O [11]
Li Y [11]
Amunts A [11]
Zikova A [11]
Silberberg JM [11]
Corey RA [11]
Shi Y [11]
Falquet L [10]
Sinning I [10]
Fromm L [10]
Jang SY [9]
Hwang GS [9]
Jaslan J [9]
Dubach VRA [9]
Lee Y [9]
Rheinberger J [9]
De Angeli A [9]
Lee S [9]
Jung S [9]
Yoo J [9]
Muller B [8]
Wild K [8]
Mattei S [8]
Tan A [8]
Krausslich HG [8]
Briggs JAG [8]
Pajak J [7]
Johnson MC [7]
Demo G [7]
Stone NP [7]
Gaubitz C [7]
Afanasyev P [7]
Boehringer D [7]
Xu HE [7]
Liu X [7]
Glockshuber R [7]
Bachmann P [7]
Wang MW [6]
Ishiguro K [6]
Fica SM [6]
Xia X [6]
Liu X [6]
Shirouzu M [6]
Fujimura A [6]
Yang D [6]
Zhang X [5]
Calder LJ [5]
Chen Q [5]
Hussein AK [5]
Oubridge C [5]
Galej WP [5]
Li X [5]
Rosenthal PB [5]
Villones RLE [5]
Kelch Phd Ba [5]
Lindkvist-petersson K [5]
Wang K [5]
Li P [5]
Gourdon P [5]
Li Y [5]
Xu P [5]
Tolar P [5]
Meloni G [5]
Dybkov O [4]
Guo Y [4]
Fiedorczuk K [4]
Wang Y [4]
Patel N [4]
Arthur CP [4]
Ciferri C [4]
Kim HJ [4]
Elghobashi-meinhardt N [4]
Kisonaite M [4]
Zhou L [4]
Ho H [4]
Murakami K [4]
Dienemann C [4]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links