Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
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SPECIES
Filter By
Current Database
- EMDB [2709]
- EMPIAR [14]
Current status
- REL [2723]
Sample type
- Protein [1796]
- Complex [1552]
- Ligand [961]
- Virus [891]
- RNA [503]
- Sample [241]
- Cellular component [160]
- DNA [122]
- Cell [120]
- Other [11]
- Tissue [8]
Organism
- Homo sapiens [638]
- Escherichia coli [147]
- Escherichia coli [144]
- Mus musculus [133]
- (no species) [122]
- Synthetic construct [87]
- Bos taurus [61]
- (no species) [59]
- Rattus norvegicus [46]
- Staphylococcus phage 812 [42]
- (no species) [42]
- Sus scrofa [39]
- Arabidopsis thaliana [38]
- Severe acute respiratory syndrome coronavirus [36]
- (no species) [34]
- Brome mosaic virus [29]
- (no species) [26]
- Paramecium bursaria chlorella virus 1 [25]
- Pseudomonas phage phi6 [22]
- Human immunodeficiency virus 1 [22]
- (no species) [21]
- Mycobacterium phage bxb1 [21]
- (no species) [18]
- Bacillus phage phi29 [17]
- Bluetongue virus [16]
- Felixounavirus johannrwettstein [16]
- (no species) [16]
- Apis mellifera [16]
- Hepatitis b virus [15]
- (no species) [15]
- Enquatrovirus n4 [15]
- (no species) [14]
- Escherichia virus qbeta [14]
- Escherichia virus t7 [13]
- Cypovirus 1 [13]
- Certrevirus phite [13]
- (no species) [13]
- Oryctolagus cuniculus [13]
- Escherichia virus qbeta [12]
- (no species) [11]
- (no species) [11]
- Agrobacterium phage milano [11]
- (no species) [11]
- (no species) [11]
- (no species) [11]
- (no species) [11]
- Bacillus subtilis [10]
- Caulobacter vibrioides [10]
- 2080449 [10]
- Schmittlotzvirus sv771 [9]
- Staphylococcus virus 80alpha [9]
- (no species) [8]
- African swine fever virus [8]
- Pseudomonas virus prd1 [8]
- Middle east respiratory syndrome-related coronavirus [8]
- Acinetobacter phage ap205 [8]
- (no species) [8]
- Kehishuvirus primarius [8]
- Pseudomonas virus pa223 [8]
- (no species) [8]
- Rotavirus a [8]
- Salmonella phage p22 [8]
- Vicugna pacos [8]
- Legionella pneumophila [8]
- (no species) [8]
- Banna virus [8]
- Porcine circovirus 2 [8]
- Simian foamy virus [7]
- Staphylococcus aureus [7]
- Dinoroseobacter phage vb_dshs-r4c [7]
- Escherichia phage lambda [7]
- Escherichia virus t5 [7]
- Autographa californica multiple nucleopolyhedrovirus [7]
- Chikungunya virus [7]
- Komagataella pastoris [7]
- Escherichia coli [7]
- (no species) [7]
- Human herpesvirus 1 [6]
- Human herpesvirus 2 [6]
- Enterobacteria phage t4 [6]
- (no species) [6]
- Pseudomonas phage pp7 [6]
- Enterovirus b [6]
- Phimunavirus fm1 [6]
- Mycobacterium tuberculosis [6]
- Emiliania huxleyi virus 201 [6]
- (no species) [6]
- (no species) [6]
- (no species) [6]
- (no species) [6]
- Hepacivirus hominis [6]
- (no species) [6]
- Bluetongue virus [6]
- Saccharomyces cerevisiae [6]
- (no species) [6]
- Vibrio alginolyticus [6]
- (no species) [6]
- Xenopus laevis [6]
- Flavobacterium phage fl-1 [6]
- Canis lupus [6]
EM Method
- Single-particle [2119]
- Helical reconstruction [228]
- Tomography [222]
- Subtomogram averaging [139]
- Electron Crystallography [1]
Resolution
- < 2Å [8]
- ≥ 2Å and < 3Å [565]
- ≥ 3Å and < 4Å [1111]
- ≥ 4Å and < 5Å [236]
- ≥ 5Å and < 6Å [42]
- ≥ 6Å and < 8Å [113]
- ≥ 8Å and < 12Å [125]
- ≥ 12Å and < 16Å [124]
- ≥ 16Å and < 20Å [61]
- ≥ 20Å and < 30Å [92]
- ≥ 30Å [62]
Model molecular weight
- 0-50 kDa [24]
- 50-100 kDa [133]
- 100-250 kDa [414]
- 250-500 kDa [213]
- 500-1000 kDa [161]
- 1-2 MDa [281]
- 2-5 MDa [398]
- 5-10 MDa [63]
- > 10 MDa [66]
Release Date
- 2025 [555]
- 2024 [521]
- 2023 [421]
- 2022 [220]
- 2021 [151]
- 2020 [183]
- 2019 [214]
- 2018 [57]
- 2017 [85]
- 2016 [104]
- 2015 [52]
- 2014 [26]
- 2013 [51]
- 2012 [15]
- 2011 [7]
- 2010 [7]
- 2009 [9]
- 2008 [3]
- 2007 [26]
- 2006 [6]
- 2005 [6]
- 2004 [1]
- 2003 [2]
- 2002 [1]
Author by name
- Liu H [141]
- Zhang X [116]
- Liu J [106]
- Liu C [100]
- Zhang J [91]
- Zhang Y [90]
- Li D [89]
- Liu Y [88]
- Ren G [86]
- Li Y [79]
- Zhou ZH [79]
- Liu X [75]
- Li W [70]
- Beckmann R [69]
- Lei D [66]
- Lei M [65]
- Marino JP [64]
- Baumeister W [61]
- Liu Z [61]
- Chen Y [60]
- Li A [57]
- Plevka P [57]
- Wang J [56]
- Sun L [53]
- Xiao H [53]
- Chen W [52]
- Korostelev AA [52]
- Novacek J [52]
- Sali A [52]
- Zhao X [52]
- Huiskonen JT [51]
- Xu C [51]
- Jasnin M [50]
- Li X [50]
- Stevens R [50]
- Stevens RC [50]
- Tao YQ [50]
- White K [50]
- White KL [50]
- Yu B [50]
- Hirst J [49]
- Rossmann MG [49]
- Li S [48]
- Rodnina MV [47]
- Loveland AB [46]
- Chiu W [45]
- Demo G [44]
- Spahn CMT [44]
- Liu HR [43]
- Song J [43]
- Siborova M [42]
- Song K [42]
- Zhang K [42]
- Berninghausen O [41]
- Wang Y [41]
- Yang X [41]
- Yin Z [41]
- Cheng J [40]
- Wang X [39]
- Zheng J [38]
- Bostina M [36]
- Cheng L [36]
- Nikolay R [36]
- Hodgkinson-bean J [35]
- Murata K [35]
- Paulo JA [35]
- Rutter GL [35]
- Yang F [35]
- Benesik M [34]
- Conway JF [34]
- Li Z [34]
- Liao M [34]
- Shin Y-C [34]
- Shin YC [34]
- Wang L [34]
- Zhang Z [34]
- Burger N [33]
- Wang F [33]
- Ward AB [33]
- Yan R [33]
- Zhu H [33]
- Sharma V [32]
- Zhang M [32]
- Ayala R [31]
- Bamford DH [31]
- Bennett CF [31]
- Chen Z [31]
- Cui Y [31]
- Djurabekova A [31]
- Gygi SP [31]
- Latorre-muro P [31]
- Puigserver P [31]
- Wolf M [31]
- Zdorevskyi O [31]
- Zhang S [31]
- Bridges HR [30]
- Yang Y [30]
- Zhao QY [30]
- Klose T [29]
- Wilson DN [29]
Author by ORCID
- Ren G [86]
- Lei M [64]
- Plevka P [57]
- Korostelev AA [52]
- Novacek J [52]
- Baumeister W [51]
- Zhou ZH [51]
- Huiskonen JT [50]
- Sali A [50]
- Sun L [50]
- Jasnin M [50]
- Xiao H [50]
- Zhang X [50]
- Hirst J [48]
- Demo G [44]
- Chiu W [44]
- Beckmann R [43]
- Siborova M [42]
- Rodnina MV [38]
- Bostina M [36]
- Nikolay R [36]
- Hodgkinson-bean J [35]
- Yin Z [35]
- Rutter GL [35]
- Benesik M [34]
- Conway JF [32]
- Zheng J [32]
- Wolf M [31]
- Zdorevskyi O [31]
- Sharma V [31]
- Ayala R [31]
- Bridges HR [30]
- Murata K [30]
- Wang F [29]
- Wilson DN [29]
- Fischer N [28]
- Bamford DH [28]
- Zhang J [28]
- Cheng J [28]
- Spahn CMT [27]
- Pauthner MG [26]
- Murrell B [26]
- Melo MB [26]
- Upadhyay AA [26]
- Martin JT [26]
- Dunigan DD [25]
- Shao Q [25]
- Fuzik T [25]
- Klose T [25]
- Van Etten Jl [25]
- Guo M [25]
- Cui Y [25]
- Liu Y [25]
- Noel EA [25]
- Fang Q [25]
- Wang A [25]
- Zhao X [25]
- Agarkova IV [25]
- Lauer SM [25]
- Chakravarty A [24]
- Butcher SJ [24]
- Beren C [24]
- Kotecha A [24]
- Rao ALN [24]
- Klinge S [24]
- Vanden Broeck A [24]
- Schmid MF [24]
- Knobler CM [24]
- Wright JJ [23]
- Loveland AB [23]
- Chung I [23]
- Egelman EH [23]
- Liu J [22]
- Zhang M [22]
- Petrychenko V [22]
- Tao J [22]
- Bustamante C [22]
- Pantucek R [22]
- Liu C [22]
- Ashby PD [22]
- Crowe AJM [22]
- Mcjarrow-keller K [22]
- Zhang K [21]
- Qin B [21]
- Mondal S [21]
- Burger J [21]
- Berninghausen O [21]
- Grba DN [21]
- Oksanen HM [21]
- Doskar J [20]
- Scharf BE [20]
- Leiman PG [20]
- Gao N [20]
- Zheng W [19]
- Chai P [19]
- Denk T [19]
- Ranson NA [19]
- Zhou CZ [19]
- Zhu J [19]
- Blaza JN [18]
Journal
- NAT COMMUN [487]
- TO BE PUBLISHED [339]
- PNAS [192]
- NATURE [189]
- CELL [132]
- J VIROL [122]
- SCIENCE [121]
- SCI ADV [88]
- NAT STRUCT MOL BIOL [80]
- SCI REP [76]
- ELIFE [75]
- BIORXIV [73]
- STRUCTURE [61]
- NUCLEIC ACIDS RES [58]
- COMMUN BIOL [52]
- J MOL BIOL [47]
- MOL CELL [47]
- CELL RES [42]
- CELL REP [29]
- PLOS PATHOG [28]
- EMBO J [26]
- PLOS BIOL [26]
- VIRUSES [25]
- NAT MICROBIOL [23]
- ACTA CRYSTALLOGR D STRUCT BIOL [22]
- CELL DISCOV [20]
- J STRUCT BIOL [17]
- J STRUCT BIOL X [13]
- NAT PLANTS [13]
- CURR BIOL [11]
- RES SQ [11]
- GENOME BIOL EVOL [10]
- NAT CHEM BIOL [10]
- J CELL SCI [9]
- NEURON [9]
- PROTEIN CELL [9]
- VIROLOGY [9]
- MBIO [8]
- PNAS NEXUS [8]
- ADV SCI [7]
- INT J MOL SCI [7]
- SIGNAL TRANSDUCT TARGET THER [7]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [6]
- FEBS OPEN BIO [6]
- J BIOL CHEM [6]
- PROTEIN SCI [6]
- SCI IMMUNOL [6]
- ACS NANO [5]
- J AM CHEM SOC [5]
- MICROORGANISMS [5]
- RNA [5]
- ACTA NEUROPATHOL [4]
- BIOCHEM BIOPHYS RES COMMUN [4]
- BIOCHEM J [4]
- BIOCHIM BIOPHYS ACTA [4]
- INT J BIOL MACROMOL [4]
- NAT METAB [4]
- NAT METHODS [4]
- NATL SCI REV [4]
- PLANT CELL [4]
- ANGEW CHEM INT ED ENGL [3]
- BIOCHEMISTRY [3]
- BIOCHIM BIOPHYS ACTA MOL CELL RES [3]
- CELL HOST MICROBE [3]
- ISCIENCE [3]
- IUCRJ [3]
- J BACTERIOL [3]
- J GEN PHYSIOL [3]
- MEDRXIV [3]
- SCI TRANSL MED [3]
- BLOOD [2]
- CANCER DISCOV [2]
- CIRCULATION [2]
- EMBO REP [2]
- FEBS LETT [2]
- J MED CHEM [2]
- J.BIOCHEM. [2]
- PHILOS.TRANS.R.SOC.LOND.B BIOL.SCI. [2]
- PLANT COMMUN. [2]
- PLOS ONE [2]
- VACCINES (BASEL) [2]
- ACS CHEM BIOL [1]
- ADV HEALTHC MATER [1]
- AGING (ALBANY NY) [1]
- APPL ENVIRON MICROBIOL [1]
- BIO PROTOC [1]
- BIOMOLECULES [1]
- BIOPHYS J [1]
- BRAIN [1]
- CELL CHEM BIOL [1]
- CELL METAB. [1]
- EMERG MICROBES INFECT [1]
- FRONT MICROBIOL [1]
- HLIFE [1]
- J BIOCHEM [1]
- J CLIN INV [1]
- J GEN VIROL [1]
- J GENET GENOMICS [1]
- LIFE SCI ALLIANCE [1]
- METHODS [1]
Software
- RELION [692]
- CRYOSPARC [376]
- CTFFIND [103]
- FREALIGN [65]
- SPIDER [57]
- IMOD [50]
- EMAN [39]
- JSPR [39]
- GCTF [38]
- CHIMERA [36]
- EMAN2 [29]
- CISTEM [26]
- COOT [24]
- AUTO3DEM [23]
- DYNAMO [21]
- J3DR [16]
- JALIGN [16]
- MRC [11]
- EMAN2, SPIDER, XMIPP [10]
- IMIRS [10]
- BSOFT [9]
- IMAGIC [9]
- WARP [8]
- CTFPHASEFLIP [7]
- AV3 [6]
- IMOD, DYNAMO [6]
- TOM [6]
- XMIPP [6]
- CRYOLO [5]
- EMCLARITY [5]
- EMPFT, POR, P3DR [5]
- MPSA, EMAN, EMAN2 [5]
- NOVACTF [5]
- CTFFIND4 [4]
- IHRSR [4]
- IMOD, EMAN, EMAN2, TOMOHUNTER [4]
- JSPR, EMAN, EMAN2 [4]
- PEET [4]
- PHENIX [4]
- PROTOMO [4]
- CTFFIND3 [3]
- EMFIT [3]
- ETOMO [3]
- IMOD, PROTOMO, I3, EMAN [3]
- PFT [3]
- PFT2, EM3DR2, POR, P3DR [3]
- SCIPION [3]
- SITUS [3]
- TOMO3D [3]
- UCSF CHIMERA [3]
- AUTO3DEM, CTFFIND3 [2]
- AUTO3DEM, ROBEM, AUTOPP [2]
- BSHOW, XMIPP [2]
- EMAN, JSPR [2]
- EMAN2, RELION [2]
- FREALIGN, UPPSALA_PACKAGE [2]
- IMAGIC5 [2]
- IMOD, PEET, BSOFT [2]
- IMOD, SPIDER, BSOFT [2]
- ISAFS [2]
- MPSA [2]
- P3DR [2]
- PHOELIX, SUPRIM [2]
- PYTOM [2]
- RELION, 1.3 [2]
- SAVR [2]
- SPIDER, EMAN [2]
- SPRING [2]
- STOPGAP [2]
- TOM, AV3 [2]
- AIMLESS [1]
- BOXER, CTFFIND3, CTFMIX, AUTO3DEM [1]
- BSOFT, JSUBTOMO [1]
- CHIMERA, COOT [1]
- CHIMERA, MDFF [1]
- CHIMERA, MDFF, COOT [1]
- CHIMERA,SITUS [1]
- COLORES [1]
- COOT, PHENIX [1]
- ELITE3D, FREALIGN [1]
- EM-PACKAGE, TOM FOR MATLAB [1]
- EMAN PFT P3DR POR [1]
- EMAN SPIDER [1]
- EMAN, BSOFT [1]
- EMAN, HIMPOSE, SPIDER [1]
- EMAN, PYTHON SCRIPT FOR ASYMMETRIC RECONSTRUCTION [1]
- EMAN, RELION, IMOD, IMAGIC [1]
- EMAN, SPIDER [1]
- EMAN,EMAN2 [1]
- EMAN1, EMAN2 [1]
- EMAN2, J3DR, JALIGN, BSOFT [1]
- EMAN2, SPIDER, BRANDEIS, HELICAL, PACKAGE, IHRSR [1]
- EMBL ICOSAHEDRAL [1]
- EMFIT SR5 [1]
- FLEX-EM [1]
- FOLDHUNTER [1]
- I3 [1]
- IMOD, PEET [1]
- IMOD,AV3,MATLAB [1]
- IMODFIT [1]
Microscope
- FEI TITAN KRIOS [1568]
- TFS KRIOS [397]
- FEI TALOS ARCTICA [123]
- FEI POLARA 300 [83]
- FEI TECNAI F20 [64]
- ZEISS LIBRA120PLUS [64]
- FEI TITAN [56]
- TFS GLACIOS [40]
- FEI TECNAI F30 [36]
- JEOL 2200FS [35]
- JEOL CRYO ARM 300 [33]
- FEI TECNAI 12 [30]
- JEOL 3200FSC [25]
- FEI/PHILIPS CM300FEG/T [23]
- FEI TECNAI ARCTICA [22]
- FEI TECNAI SPIRIT [16]
- FEI/PHILIPS CM200FEG [15]
- FEI/PHILIPS CM120T [12]
- FEI TECNAI 20 [10]
- JEOL 2010F [9]
- JEOL 2200FSC [8]
- TFS TALOS [8]
- JEOL 3200FS [7]
- FEI/PHILIPS CM200T [4]
- JEOL 2100F [4]
- JEOL 2100 [3]
- TFS TALOS F200C [3]
- FEI MORGAGNI [2]
- FEI TECNAI 10 [2]
- FEI/PHILIPS CM200FEG/ST [2]
- FEI/PHILIPS CM300FEG/HE [2]
- JEOL CRYO ARM 200 [2]
- TFS TALOS L120C [2]
- FEI TECNAI SPHERA [1]
- FEI/PHILIPS CM12 [1]
- FEI/PHILIPS CM300FEG/ST [1]
- FEI/PHILIPS EM400 [1]
- JEOL 1400/HR YPS FEG [1]
- JEOL 2010 [1]
- JEOL 2011 [1]
- OTHER [1]
Electron Source
- FIELD EMISSION GUN [2561]
- LAB6 [132]
- OTHER [13]
- TUNGSTEN HAIRPIN [3]
Film or detector model
- GATAN K3 6K X 4K [679]
- GATAN K2 SUMMIT 4K X 4K [491]
- GATAN K3 BIOQUANTUM 6K X 4K [403]
- FEI FALCON III 4K X 4K [186]
- FEI FALCON IV 4K X 4K [184]
- FEI FALCON II 4K X 4K [165]
- GATAN ULTRASCAN 4000 4K X 4K [136]
- GATAN K2 QUANTUM 4K X 4K [109]
- KODAK SO-163 FILM [93]
- GATAN K3 BIOCONTINUUM 6K X 4K [47]
- TFS FALCON 4I 4K X 4K [34]
- FEI EAGLE 4K X 4K [29]
- OTHER [21]
- FEI EAGLE 2K X 2K [12]
- GATAN K2 BASE 4K X 4K [12]
- GENERIC CCD [12]
- TVIPS TEMCAM-F415 4K X 4K [12]
- DIRECT ELECTRON DE-20 5K X 3K [10]
- GATAN K2 4K X 4K [9]
- TVIPS TEMCAM-F416 4K X 4K [7]
- FEI CETA 4K X 4K [6]
- DIRECT ELECTRON DE-12 4K X 3K [5]
- GATAN ORIUS SC200 2K X 2K [5]
- GENERIC CCD 2K X 2K [5]
- GENERIC GATAN [5]
- GATAN MULTISCAN [3]
- GENERIC TVIPS 4K X 4K [3]
- DIRECT ELECTRON DE-10 5K X 4K [2]
- TVIPS TEMCAM-F816 8K X 8K [2]
- DECTRIS SINGLA 1K X 1K [1]
- DIRECT ELECTRON APOLLO 4K X 4K [1]
- DIRECT ELECTRON DE-16 4K X 4K [1]
- FEI FALCON I 4K X 4K [1]
- GATAN ULTRASCAN 1000 2K X 2K [1]
- GATAN ULTRASCAN 10000 10K X 10K [1]
- GENERIC GATAN 4K X 4K [1]
EMPIAR Experiment type
- EMDB [8]
- SBF-SEM [4]
- FIB-SEM [2]
EMPIAR Image category
- MICROGRAPHS - SINGLE FRAME [5]
- TILT SERIES [5]
- MICROGRAPHS - MULTIFRAME [4]
- STITCHED MAPS [1]
External links
- PDB [1761]
- UniProt [1647]
- PDBe-Kb [1502]
- Pfam [1415]
- Gene Ontology [1375]
- InterPro [1263]
- AlphaFold DB [1248]
- ChEBI [913]
- ChEMBL [845]
- DrugBank [828]
- Complex Portal [580]
- EMPIAR [228]
- CATH [26]
- SCOP2 [26]
- EMDB [8]
Xu KE, Chen YT
To Be Published
Release date: Dec. 24, 2025
Resolution: 2.29 Å
EM Method: Single-particle
Fitted PDBs: 9kr4
Q-score: 0.684
Resolution: 2.29 Å
EM Method: Single-particle
Fitted PDBs: 9kr4
Q-score: 0.684
Tang L, Cao S, Chen Q, Zhong C, Wang F, Liu Z, Zhang X, Ke C
To Be Published
Release date: Dec. 24, 2025
Resolution: 2.93 Å
EM Method: Single-particle
Resolution: 2.93 Å
EM Method: Single-particle
Hu Z, SunKang Y, Liu Z, Huang L, Qi W, Yan R
iScience (2025) 28 pp. 114155- [ DOI: doi:10.1016/j.isci.2025.114155 ]
Release date: Dec. 24, 2025
Resolution: 2.75 Å
EM Method: Helical reconstruction
Fitted PDBs: 9pm9
Q-score: 0.536
Resolution: 2.75 Å
EM Method: Helical reconstruction
Fitted PDBs: 9pm9
Q-score: 0.536
Basu D, Gu Y, Corbett KD
To Be Published
Release date: Dec. 24, 2025
Resolution: 2.84 Å
EM Method: Helical reconstruction
Fitted PDBs: 9pmk
Q-score: 0.54
Resolution: 2.84 Å
EM Method: Helical reconstruction
Fitted PDBs: 9pmk
Q-score: 0.54
Basu D, Gu Y, Corbett KD
To Be Published
Bellis NF, Lokareddy RK, Pavlenok M, Horton SLC, Kizziah JL, Forti F, Schneider DA, Niederweis M, Briani F, Cingolani G
Res Sq (2025) [ DOI: doi:10.21203/rs.3.rs-7746245/v1 Pubmed: 41282253 ]
Release date: Dec. 24, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9yf8
Q-score: 0.52
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9yf8
Q-score: 0.52
Bellis NF, Lokareddy RK, Pavlenok M, Horton SLC, Kizziah JL, Forti F, Schneider DA, Niederweis M, Briani F, Cingolani G
Res Sq (2025) [ DOI: doi:10.21203/rs.3.rs-7746245/v1 Pubmed: 41282253 ]
Release date: Dec. 24, 2025
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 9zfl
Q-score: 0.615
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 9zfl
Q-score: 0.615
Llorente-Esteban A, Sabbineni H, Hoffsmith K, Manville RW, Lopez-Gonzalez D, Reyna-Neyra A, Leyva JA, Abbott GW, Bianchet MA, Carrasco N
To Be Published
Release date: Dec. 17, 2025
Resolution: 4.61 Å
EM Method: Single-particle
Resolution: 4.61 Å
EM Method: Single-particle
Mundy RM, Waraich K, Bates EA, Rizkallah PJ, Baker AT, Young MT, Morris E, da Fonseca PCA, Bliss CM, Matthews D, Bhella D, Parker AL
bioRxiv (2025) [ DOI: doi:10.1101/2025.09.20.677498 ]
Mundy RM, Waraich K, Bates EA, Rizkallah PJ, Baker AT, Young MT, Morris E, da Fonseca PCA, Bliss CM, Matthews D, Bhella D, Parker AL
bioRxiv (2025) [ DOI: doi:10.1101/2025.09.20.677498 ]
Filter By
Current Database
- EMDB [2709]
- EMPIAR [14]
Current status
- REL [2723]
Sample type
- Protein [1796]
- Complex [1552]
- Ligand [961]
- Virus [891]
- RNA [503]
- Sample [241]
- Cellular component [160]
- DNA [122]
- Cell [120]
- Other [11]
- Tissue [8]
Organism
- Homo sapiens [638]
- Escherichia coli [147]
- Escherichia coli [144]
- Mus musculus [133]
- (no species) [122]
- Synthetic construct [87]
- Bos taurus [61]
- (no species) [59]
- Rattus norvegicus [46]
- Staphylococcus phage 812 [42]
- (no species) [42]
- Sus scrofa [39]
- Arabidopsis thaliana [38]
- Severe acute respiratory syndrome coronavirus [36]
- (no species) [34]
- Brome mosaic virus [29]
- (no species) [26]
- Paramecium bursaria chlorella virus 1 [25]
- Pseudomonas phage phi6 [22]
- Human immunodeficiency virus 1 [22]
- (no species) [21]
- Mycobacterium phage bxb1 [21]
- (no species) [18]
- Bacillus phage phi29 [17]
- Bluetongue virus [16]
- Felixounavirus johannrwettstein [16]
- (no species) [16]
- Apis mellifera [16]
- Hepatitis b virus [15]
- (no species) [15]
- Enquatrovirus n4 [15]
- (no species) [14]
- Escherichia virus qbeta [14]
- Escherichia virus t7 [13]
- Cypovirus 1 [13]
- Certrevirus phite [13]
- (no species) [13]
- Oryctolagus cuniculus [13]
- Escherichia virus qbeta [12]
- (no species) [11]
- (no species) [11]
- Agrobacterium phage milano [11]
- (no species) [11]
- (no species) [11]
- (no species) [11]
- (no species) [11]
- Bacillus subtilis [10]
- Caulobacter vibrioides [10]
- 2080449 [10]
- Schmittlotzvirus sv771 [9]
- Staphylococcus virus 80alpha [9]
- (no species) [8]
- African swine fever virus [8]
- Pseudomonas virus prd1 [8]
- Middle east respiratory syndrome-related coronavirus [8]
- Acinetobacter phage ap205 [8]
- (no species) [8]
- Kehishuvirus primarius [8]
- Pseudomonas virus pa223 [8]
- (no species) [8]
- Rotavirus a [8]
- Salmonella phage p22 [8]
- Vicugna pacos [8]
- Legionella pneumophila [8]
- (no species) [8]
- Banna virus [8]
- Porcine circovirus 2 [8]
- Simian foamy virus [7]
- Staphylococcus aureus [7]
- Dinoroseobacter phage vb_dshs-r4c [7]
- Escherichia phage lambda [7]
- Escherichia virus t5 [7]
- Autographa californica multiple nucleopolyhedrovirus [7]
- Chikungunya virus [7]
- Komagataella pastoris [7]
- Escherichia coli [7]
- (no species) [7]
- Human herpesvirus 1 [6]
- Human herpesvirus 2 [6]
- Enterobacteria phage t4 [6]
- (no species) [6]
- Pseudomonas phage pp7 [6]
- Enterovirus b [6]
- Phimunavirus fm1 [6]
- Mycobacterium tuberculosis [6]
- Emiliania huxleyi virus 201 [6]
- (no species) [6]
- (no species) [6]
- (no species) [6]
- (no species) [6]
- Hepacivirus hominis [6]
- (no species) [6]
- Bluetongue virus [6]
- Saccharomyces cerevisiae [6]
- (no species) [6]
- Vibrio alginolyticus [6]
- (no species) [6]
- Xenopus laevis [6]
- Flavobacterium phage fl-1 [6]
- Canis lupus [6]
EM Method
- Single-particle [2119]
- Helical reconstruction [228]
- Tomography [222]
- Subtomogram averaging [139]
- Electron Crystallography [1]
Resolution
- < 2Å [8]
- ≥ 2Å and < 3Å [565]
- ≥ 3Å and < 4Å [1111]
- ≥ 4Å and < 5Å [236]
- ≥ 5Å and < 6Å [42]
- ≥ 6Å and < 8Å [113]
- ≥ 8Å and < 12Å [125]
- ≥ 12Å and < 16Å [124]
- ≥ 16Å and < 20Å [61]
- ≥ 20Å and < 30Å [92]
- ≥ 30Å [62]
Model molecular weight
- 0-50 kDa [24]
- 50-100 kDa [133]
- 100-250 kDa [414]
- 250-500 kDa [213]
- 500-1000 kDa [161]
- 1-2 MDa [281]
- 2-5 MDa [398]
- 5-10 MDa [63]
- > 10 MDa [66]
Release Date
- 2025 [555]
- 2024 [521]
- 2023 [421]
- 2022 [220]
- 2021 [151]
- 2020 [183]
- 2019 [214]
- 2018 [57]
- 2017 [85]
- 2016 [104]
- 2015 [52]
- 2014 [26]
- 2013 [51]
- 2012 [15]
- 2011 [7]
- 2010 [7]
- 2009 [9]
- 2008 [3]
- 2007 [26]
- 2006 [6]
- 2005 [6]
- 2004 [1]
- 2003 [2]
- 2002 [1]
Author by name
- Liu H [141]
- Zhang X [116]
- Liu J [106]
- Liu C [100]
- Zhang J [91]
- Zhang Y [90]
- Li D [89]
- Liu Y [88]
- Ren G [86]
- Li Y [79]
- Zhou ZH [79]
- Liu X [75]
- Li W [70]
- Beckmann R [69]
- Lei D [66]
- Lei M [65]
- Marino JP [64]
- Baumeister W [61]
- Liu Z [61]
- Chen Y [60]
- Li A [57]
- Plevka P [57]
- Wang J [56]
- Sun L [53]
- Xiao H [53]
- Chen W [52]
- Korostelev AA [52]
- Novacek J [52]
- Sali A [52]
- Zhao X [52]
- Huiskonen JT [51]
- Xu C [51]
- Jasnin M [50]
- Li X [50]
- Stevens R [50]
- Stevens RC [50]
- Tao YQ [50]
- White K [50]
- White KL [50]
- Yu B [50]
- Hirst J [49]
- Rossmann MG [49]
- Li S [48]
- Rodnina MV [47]
- Loveland AB [46]
- Chiu W [45]
- Demo G [44]
- Spahn CMT [44]
- Liu HR [43]
- Song J [43]
- Siborova M [42]
- Song K [42]
- Zhang K [42]
- Berninghausen O [41]
- Wang Y [41]
- Yang X [41]
- Yin Z [41]
- Cheng J [40]
- Wang X [39]
- Zheng J [38]
- Bostina M [36]
- Cheng L [36]
- Nikolay R [36]
- Hodgkinson-bean J [35]
- Murata K [35]
- Paulo JA [35]
- Rutter GL [35]
- Yang F [35]
- Benesik M [34]
- Conway JF [34]
- Li Z [34]
- Liao M [34]
- Shin Y-C [34]
- Shin YC [34]
- Wang L [34]
- Zhang Z [34]
- Burger N [33]
- Wang F [33]
- Ward AB [33]
- Yan R [33]
- Zhu H [33]
- Sharma V [32]
- Zhang M [32]
- Ayala R [31]
- Bamford DH [31]
- Bennett CF [31]
- Chen Z [31]
- Cui Y [31]
- Djurabekova A [31]
- Gygi SP [31]
- Latorre-muro P [31]
- Puigserver P [31]
- Wolf M [31]
- Zdorevskyi O [31]
- Zhang S [31]
- Bridges HR [30]
- Yang Y [30]
- Zhao QY [30]
- Klose T [29]
- Wilson DN [29]
Author by ORCID
- Ren G [86]
- Lei M [64]
- Plevka P [57]
- Korostelev AA [52]
- Novacek J [52]
- Baumeister W [51]
- Zhou ZH [51]
- Huiskonen JT [50]
- Sali A [50]
- Sun L [50]
- Jasnin M [50]
- Xiao H [50]
- Zhang X [50]
- Hirst J [48]
- Demo G [44]
- Chiu W [44]
- Beckmann R [43]
- Siborova M [42]
- Rodnina MV [38]
- Bostina M [36]
- Nikolay R [36]
- Hodgkinson-bean J [35]
- Yin Z [35]
- Rutter GL [35]
- Benesik M [34]
- Conway JF [32]
- Zheng J [32]
- Wolf M [31]
- Zdorevskyi O [31]
- Sharma V [31]
- Ayala R [31]
- Bridges HR [30]
- Murata K [30]
- Wang F [29]
- Wilson DN [29]
- Fischer N [28]
- Bamford DH [28]
- Zhang J [28]
- Cheng J [28]
- Spahn CMT [27]
- Pauthner MG [26]
- Murrell B [26]
- Melo MB [26]
- Upadhyay AA [26]
- Martin JT [26]
- Dunigan DD [25]
- Shao Q [25]
- Fuzik T [25]
- Klose T [25]
- Van Etten Jl [25]
- Guo M [25]
- Cui Y [25]
- Liu Y [25]
- Noel EA [25]
- Fang Q [25]
- Wang A [25]
- Zhao X [25]
- Agarkova IV [25]
- Lauer SM [25]
- Chakravarty A [24]
- Butcher SJ [24]
- Beren C [24]
- Kotecha A [24]
- Rao ALN [24]
- Klinge S [24]
- Vanden Broeck A [24]
- Schmid MF [24]
- Knobler CM [24]
- Wright JJ [23]
- Loveland AB [23]
- Chung I [23]
- Egelman EH [23]
- Liu J [22]
- Zhang M [22]
- Petrychenko V [22]
- Tao J [22]
- Bustamante C [22]
- Pantucek R [22]
- Liu C [22]
- Ashby PD [22]
- Crowe AJM [22]
- Mcjarrow-keller K [22]
- Zhang K [21]
- Qin B [21]
- Mondal S [21]
- Burger J [21]
- Berninghausen O [21]
- Grba DN [21]
- Oksanen HM [21]
- Doskar J [20]
- Scharf BE [20]
- Leiman PG [20]
- Gao N [20]
- Zheng W [19]
- Chai P [19]
- Denk T [19]
- Ranson NA [19]
- Zhou CZ [19]
- Zhu J [19]
- Blaza JN [18]
Journal
- NAT COMMUN [487]
- TO BE PUBLISHED [339]
- PNAS [192]
- NATURE [189]
- CELL [132]
- J VIROL [122]
- SCIENCE [121]
- SCI ADV [88]
- NAT STRUCT MOL BIOL [80]
- SCI REP [76]
- ELIFE [75]
- BIORXIV [73]
- STRUCTURE [61]
- NUCLEIC ACIDS RES [58]
- COMMUN BIOL [52]
- J MOL BIOL [47]
- MOL CELL [47]
- CELL RES [42]
- CELL REP [29]
- PLOS PATHOG [28]
- EMBO J [26]
- PLOS BIOL [26]
- VIRUSES [25]
- NAT MICROBIOL [23]
- ACTA CRYSTALLOGR D STRUCT BIOL [22]
- CELL DISCOV [20]
- J STRUCT BIOL [17]
- J STRUCT BIOL X [13]
- NAT PLANTS [13]
- CURR BIOL [11]
- RES SQ [11]
- GENOME BIOL EVOL [10]
- NAT CHEM BIOL [10]
- J CELL SCI [9]
- NEURON [9]
- PROTEIN CELL [9]
- VIROLOGY [9]
- MBIO [8]
- PNAS NEXUS [8]
- ADV SCI [7]
- INT J MOL SCI [7]
- SIGNAL TRANSDUCT TARGET THER [7]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [6]
- FEBS OPEN BIO [6]
- J BIOL CHEM [6]
- PROTEIN SCI [6]
- SCI IMMUNOL [6]
- ACS NANO [5]
- J AM CHEM SOC [5]
- MICROORGANISMS [5]
- RNA [5]
- ACTA NEUROPATHOL [4]
- BIOCHEM BIOPHYS RES COMMUN [4]
- BIOCHEM J [4]
- BIOCHIM BIOPHYS ACTA [4]
- INT J BIOL MACROMOL [4]
- NAT METAB [4]
- NAT METHODS [4]
- NATL SCI REV [4]
- PLANT CELL [4]
- ANGEW CHEM INT ED ENGL [3]
- BIOCHEMISTRY [3]
- BIOCHIM BIOPHYS ACTA MOL CELL RES [3]
- CELL HOST MICROBE [3]
- ISCIENCE [3]
- IUCRJ [3]
- J BACTERIOL [3]
- J GEN PHYSIOL [3]
- MEDRXIV [3]
- SCI TRANSL MED [3]
- BLOOD [2]
- CANCER DISCOV [2]
- CIRCULATION [2]
- EMBO REP [2]
- FEBS LETT [2]
- J MED CHEM [2]
- J.BIOCHEM. [2]
- PHILOS.TRANS.R.SOC.LOND.B BIOL.SCI. [2]
- PLANT COMMUN. [2]
- PLOS ONE [2]
- VACCINES (BASEL) [2]
- ACS CHEM BIOL [1]
- ADV HEALTHC MATER [1]
- AGING (ALBANY NY) [1]
- APPL ENVIRON MICROBIOL [1]
- BIO PROTOC [1]
- BIOMOLECULES [1]
- BIOPHYS J [1]
- BRAIN [1]
- CELL CHEM BIOL [1]
- CELL METAB. [1]
- EMERG MICROBES INFECT [1]
- FRONT MICROBIOL [1]
- HLIFE [1]
- J BIOCHEM [1]
- J CLIN INV [1]
- J GEN VIROL [1]
- J GENET GENOMICS [1]
- LIFE SCI ALLIANCE [1]
- METHODS [1]
Software
- RELION [692]
- CRYOSPARC [376]
- CTFFIND [103]
- FREALIGN [65]
- SPIDER [57]
- IMOD [50]
- EMAN [39]
- JSPR [39]
- GCTF [38]
- CHIMERA [36]
- EMAN2 [29]
- CISTEM [26]
- COOT [24]
- AUTO3DEM [23]
- DYNAMO [21]
- J3DR [16]
- JALIGN [16]
- MRC [11]
- EMAN2, SPIDER, XMIPP [10]
- IMIRS [10]
- BSOFT [9]
- IMAGIC [9]
- WARP [8]
- CTFPHASEFLIP [7]
- AV3 [6]
- IMOD, DYNAMO [6]
- TOM [6]
- XMIPP [6]
- CRYOLO [5]
- EMCLARITY [5]
- EMPFT, POR, P3DR [5]
- MPSA, EMAN, EMAN2 [5]
- NOVACTF [5]
- CTFFIND4 [4]
- IHRSR [4]
- IMOD, EMAN, EMAN2, TOMOHUNTER [4]
- JSPR, EMAN, EMAN2 [4]
- PEET [4]
- PHENIX [4]
- PROTOMO [4]
- CTFFIND3 [3]
- EMFIT [3]
- ETOMO [3]
- IMOD, PROTOMO, I3, EMAN [3]
- PFT [3]
- PFT2, EM3DR2, POR, P3DR [3]
- SCIPION [3]
- SITUS [3]
- TOMO3D [3]
- UCSF CHIMERA [3]
- AUTO3DEM, CTFFIND3 [2]
- AUTO3DEM, ROBEM, AUTOPP [2]
- BSHOW, XMIPP [2]
- EMAN, JSPR [2]
- EMAN2, RELION [2]
- FREALIGN, UPPSALA_PACKAGE [2]
- IMAGIC5 [2]
- IMOD, PEET, BSOFT [2]
- IMOD, SPIDER, BSOFT [2]
- ISAFS [2]
- MPSA [2]
- P3DR [2]
- PHOELIX, SUPRIM [2]
- PYTOM [2]
- RELION, 1.3 [2]
- SAVR [2]
- SPIDER, EMAN [2]
- SPRING [2]
- STOPGAP [2]
- TOM, AV3 [2]
- AIMLESS [1]
- BOXER, CTFFIND3, CTFMIX, AUTO3DEM [1]
- BSOFT, JSUBTOMO [1]
- CHIMERA, COOT [1]
- CHIMERA, MDFF [1]
- CHIMERA, MDFF, COOT [1]
- CHIMERA,SITUS [1]
- COLORES [1]
- COOT, PHENIX [1]
- ELITE3D, FREALIGN [1]
- EM-PACKAGE, TOM FOR MATLAB [1]
- EMAN PFT P3DR POR [1]
- EMAN SPIDER [1]
- EMAN, BSOFT [1]
- EMAN, HIMPOSE, SPIDER [1]
- EMAN, PYTHON SCRIPT FOR ASYMMETRIC RECONSTRUCTION [1]
- EMAN, RELION, IMOD, IMAGIC [1]
- EMAN, SPIDER [1]
- EMAN,EMAN2 [1]
- EMAN1, EMAN2 [1]
- EMAN2, J3DR, JALIGN, BSOFT [1]
- EMAN2, SPIDER, BRANDEIS, HELICAL, PACKAGE, IHRSR [1]
- EMBL ICOSAHEDRAL [1]
- EMFIT SR5 [1]
- FLEX-EM [1]
- FOLDHUNTER [1]
- I3 [1]
- IMOD, PEET [1]
- IMOD,AV3,MATLAB [1]
- IMODFIT [1]
Microscope
- FEI TITAN KRIOS [1568]
- TFS KRIOS [397]
- FEI TALOS ARCTICA [123]
- FEI POLARA 300 [83]
- FEI TECNAI F20 [64]
- ZEISS LIBRA120PLUS [64]
- FEI TITAN [56]
- TFS GLACIOS [40]
- FEI TECNAI F30 [36]
- JEOL 2200FS [35]
- JEOL CRYO ARM 300 [33]
- FEI TECNAI 12 [30]
- JEOL 3200FSC [25]
- FEI/PHILIPS CM300FEG/T [23]
- FEI TECNAI ARCTICA [22]
- FEI TECNAI SPIRIT [16]
- FEI/PHILIPS CM200FEG [15]
- FEI/PHILIPS CM120T [12]
- FEI TECNAI 20 [10]
- JEOL 2010F [9]
- JEOL 2200FSC [8]
- TFS TALOS [8]
- JEOL 3200FS [7]
- FEI/PHILIPS CM200T [4]
- JEOL 2100F [4]
- JEOL 2100 [3]
- TFS TALOS F200C [3]
- FEI MORGAGNI [2]
- FEI TECNAI 10 [2]
- FEI/PHILIPS CM200FEG/ST [2]
- FEI/PHILIPS CM300FEG/HE [2]
- JEOL CRYO ARM 200 [2]
- TFS TALOS L120C [2]
- FEI TECNAI SPHERA [1]
- FEI/PHILIPS CM12 [1]
- FEI/PHILIPS CM300FEG/ST [1]
- FEI/PHILIPS EM400 [1]
- JEOL 1400/HR YPS FEG [1]
- JEOL 2010 [1]
- JEOL 2011 [1]
- OTHER [1]
Electron Source
- FIELD EMISSION GUN [2561]
- LAB6 [132]
- OTHER [13]
- TUNGSTEN HAIRPIN [3]
Film or detector model
- GATAN K3 6K X 4K [679]
- GATAN K2 SUMMIT 4K X 4K [491]
- GATAN K3 BIOQUANTUM 6K X 4K [403]
- FEI FALCON III 4K X 4K [186]
- FEI FALCON IV 4K X 4K [184]
- FEI FALCON II 4K X 4K [165]
- GATAN ULTRASCAN 4000 4K X 4K [136]
- GATAN K2 QUANTUM 4K X 4K [109]
- KODAK SO-163 FILM [93]
- GATAN K3 BIOCONTINUUM 6K X 4K [47]
- TFS FALCON 4I 4K X 4K [34]
- FEI EAGLE 4K X 4K [29]
- OTHER [21]
- FEI EAGLE 2K X 2K [12]
- GATAN K2 BASE 4K X 4K [12]
- GENERIC CCD [12]
- TVIPS TEMCAM-F415 4K X 4K [12]
- DIRECT ELECTRON DE-20 5K X 3K [10]
- GATAN K2 4K X 4K [9]
- TVIPS TEMCAM-F416 4K X 4K [7]
- FEI CETA 4K X 4K [6]
- DIRECT ELECTRON DE-12 4K X 3K [5]
- GATAN ORIUS SC200 2K X 2K [5]
- GENERIC CCD 2K X 2K [5]
- GENERIC GATAN [5]
- GATAN MULTISCAN [3]
- GENERIC TVIPS 4K X 4K [3]
- DIRECT ELECTRON DE-10 5K X 4K [2]
- TVIPS TEMCAM-F816 8K X 8K [2]
- DECTRIS SINGLA 1K X 1K [1]
- DIRECT ELECTRON APOLLO 4K X 4K [1]
- DIRECT ELECTRON DE-16 4K X 4K [1]
- FEI FALCON I 4K X 4K [1]
- GATAN ULTRASCAN 1000 2K X 2K [1]
- GATAN ULTRASCAN 10000 10K X 10K [1]
- GENERIC GATAN 4K X 4K [1]
EMPIAR Experiment type
- EMDB [8]
- SBF-SEM [4]
- FIB-SEM [2]
EMPIAR Image category
- MICROGRAPHS - SINGLE FRAME [5]
- TILT SERIES [5]
- MICROGRAPHS - MULTIFRAME [4]
- STITCHED MAPS [1]
External links
- PDB [1761]
- UniProt [1647]
- PDBe-Kb [1502]
- Pfam [1415]
- Gene Ontology [1375]
- InterPro [1263]
- AlphaFold DB [1248]
- ChEBI [913]
- ChEMBL [845]
- DrugBank [828]
- Complex Portal [580]
- EMPIAR [228]
- CATH [26]
- SCOP2 [26]
- EMDB [8]