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Current Database

  • EMDB [68]

Current status

  • REL [68]

Sample type

  • Sample [68]
  • Protein [45]
  • Complex [37]
  • RNA [8]
  • Ligand [4]

Organism

  • Saccharomyces cerevisiae [17]
  • Escherichia coli [13]
  • Thermus thermophilus [5]
  • Triticum sp. [5]
  • Oryctolagus cuniculus [4]
  • Yersinia enterocolitica [3]
  • Bacillus phage spp1 [2]
  • Thermus thermophilus [2]
  • Rhizobium loti [2]
  • Megathura crenulata [2]
  • Limulus polyphemus [2]
  • Homo sapiens [2]
  • Mammalian orthorubulavirus 5 [1]
  • Pseudomonas savastanoi [1]
  • Synechococcus elongatus [1]
  • Nautilus pompilius [1]
  • Triticum aestivum [1]
  • Schizosaccharomyces pombe [1]
  • Neurospora crassa [1]
  • Klebsiella pneumoniae [1]
  • Biomphalaria glabrata [1]
  • Canis lupus [1]
  • Canis sp. [1]

EM Method

  • Single-particle [65]
  • Electron Crystallography [3]

Resolution

  • ≥ 3Å and < 4Å [1]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [22]
  • ≥ 8Å and < 12Å [24]
  • ≥ 12Å and < 16Å [6]
  • ≥ 16Å and < 20Å [4]
  • ≥ 20Å and < 30Å [7]
  • ≥ 30Å [1]

Model molecular weight

  • 50-100 kDa [3]
  • 100-250 kDa [10]
  • 250-500 kDa [6]
  • 500-1000 kDa [1]
  • 1-2 MDa [3]
  • 2-5 MDa [10]
  • 5-10 MDa [1]

Release Date

  • 2015 [8]
  • 2014 [3]
  • 2013 [5]
  • 2012 [3]
  • 2011 [11]
  • 2010 [17]
  • 2009 [6]
  • 2008 [5]
  • 2007 [4]
  • 2006 [4]
  • 2005 [2]

Author by name

  • Mielke T [34]
  • Beckmann R [22]
  • Berninghausen O [14]
  • Becker T [13]
  • Armache JP [11]
  • Bhushan S [11]
  • Spahn CM [11]
  • Wilson DN [11]
  • Jarasch A [9]
  • Gartmann M [8]
  • Halic M [8]
  • Stahlberg H [8]
  • Chami M [7]
  • Giesebrecht J [7]
  • Schulten K [7]
  • Spahn CMT [7]
  • Westhof E [7]
  • Connell SR [6]
  • Funes S [6]
  • Gumbart J [6]
  • Jossinet F [6]
  • Nierhaus KH [6]
  • Blau M [5]
  • Engel A [5]
  • Gilmore R [5]
  • Klaholz BP [5]
  • Kowal J [5]
  • Loerke J [5]
  • Mandon E [5]
  • Mandon EC [5]
  • Markl J [5]
  • Papai G [5]
  • Ruhlmann C [5]
  • Schultz P [5]
  • Tripathi MK [5]
  • Weil PA [5]
  • Al-bassam J [4]
  • Altman R [4]
  • Altman RB [4]
  • Blanchard S [4]
  • Blanchard SC [4]
  • Budkevich T [4]
  • Corbett KD [4]
  • Frauenfeld J [4]
  • Fucini P [4]
  • Jia W [4]
  • Layer JH [4]
  • Le S [4]
  • Leary J [4]
  • Marzi S [4]
  • Moore JK [4]
  • Muller SA [4]
  • Munro J [4]
  • Munro JB [4]
  • Myasnikov AG [4]
  • Nierhaus K [4]
  • Nithianantham S [4]
  • Penczek PA [4]
  • Pool MR [4]
  • Seto E [4]
  • Sinning I [4]
  • Spahn C [4]
  • Yusupov M [4]
  • Amstutz M [3]
  • Arheit M [3]
  • Castano-diez D [3]
  • Cornelis GR [3]
  • Depoix F [3]
  • Gatsogiannis C [3]
  • Gualerzi CO [3]
  • Kudryashev M [3]
  • Muller AS [3]
  • Ringler P [3]
  • Seidelt B [3]
  • Simonetti A [3]
  • Wild K [3]
  • Baumgartner P [2]
  • Beatrix B [2]
  • Brasiles S [2]
  • Bruenner M [2]
  • Chaban Y [2]
  • Chiu P-L [2]
  • Cornilleau C [2]
  • Dabrowski M [2]
  • Doenhoefer A [2]
  • Giuliodori AM [2]
  • Gruetter MG [2]
  • Hartmann RK [2]
  • Hildebrand PW [2]
  • Hoffman T [2]
  • Hoffmann T [2]
  • Karreman M [2]
  • Lurz R [2]
  • Meissner U [2]
  • Mikolajka A [2]
  • Nimigean CM [2]
  • Onuchic J [2]
  • Orlova EV [2]
  • Ramrath DJ [2]
  • Ramrath DJF [2]

Author by ORCID

  • Armache JP [11]
  • Bhushan S [11]
  • Wilson DN [11]
  • Stahlberg H [8]
  • Connell SR [6]
  • Funes S [6]
  • Papai G [5]
  • Loerke J [5]
  • Schultz P [5]
  • Tripathi MK [5]
  • Kowal J [5]
  • Yusupov M [4]
  • Corbett KD [4]
  • Marzi S [4]
  • Fucini P [4]
  • Blanchard SC [4]
  • Pool MR [4]
  • Simonetti A [3]
  • Castano-diez D [3]
  • Kudryashev M [3]
  • Chiu P-L [2]
  • Tavares P [2]
  • Gatsogiannis C [2]
  • Nimigean CM [2]
  • Giuliodori AM [2]
  • Topf M [2]
  • Yusupova G [2]
  • Karreman M [2]
  • Schroeder GF [2]
  • Dabrowski M [2]
  • Orlova EV [2]
  • Scheuring S [2]
  • Starosta AL [2]
  • Villa E [2]
  • Cornilleau C [2]
  • Scheerer P [1]
  • Wriggers W [1]
  • Beatrix B [1]
  • Ludwig K [1]
  • Pozidis C [1]
  • Hayer-hartl M [1]
  • Serganov A [1]
  • Sander B [1]
  • Bracher A [1]
  • Yan C [1]
  • Soding J [1]
  • Sprink T [1]
  • Diaconu M [1]
  • Economou A [1]
  • Habeck M [1]
  • Wahl MC [1]
  • Rochel N [1]
  • Fischer N [1]
  • Ramakrishnan V [1]
  • Saschenbrecker S [1]
  • Murphy FV [1]
  • Boesen T [1]
  • Burmester T [1]
  • Saur M [1]
  • Weir JR [1]
  • Veit M [1]
  • Pedersen JS [1]
  • Ivanov P [1]
  • Wang H [1]
  • Rodnina MV [1]
  • Moeller A [1]
  • Moeller V [1]
  • Kinzy TG [1]
  • Shi Y [1]
  • Werten S [1]
  • Meesters C [1]
  • Golas MM [1]
  • Tenzer S [1]
  • Yokoyama S [1]
  • Innis CA [1]
  • Zachariae U [1]
  • Fabbretti A [1]

Journal

  • NATURE [13]
  • SCIENCE [9]
  • NAT STRUCT MOL BIOL [8]
  • J MOL BIOL [5]
  • MOL CELL [5]
  • STRUCTURE [5]
  • ELIFE [4]
  • PNAS [4]
  • CELL [3]
  • EMBO J [2]
  • NAT COMMUN [2]
  • PLOS BIOL [2]
  • GENOME BIOL EVOL [1]
  • J BIOL CHEM [1]
  • J VIROL [1]
  • MOL MICROBIOL [1]
  • PLOS ONE [1]
  • TO BE PUBLISHED [1]

Software

  • SPIDER [35]
  • IMAGIC [6]
  • IMAGIC, SPIDER [5]
  • IMAGIC-5 [5]
  • CHIMERA [4]
  • SPIDER, EMAN2 [4]
  • 2DX [3]
  • EMAN2 [3]
  • SITUS [3]
  • CHIMERA, VEDA UROX , MODELLER FLEX-EM [2]
  • GROMACS [2]
  • IMAGIC, SPIDER, EMAN [2]
  • PROGRAM O [2]
  • AMIRA 3.1, TGS SOFTWARE [1]
  • BKPR [1]
  • EMAN [1]
  • EMAN1 [1]
  • EMAN1.9 [1]
  • FLEX-EM [1]
  • IMAGIC, PYMOL [1]
  • MANUAL [1]
  • MDFF [1]
  • MOD-EM AND FLEX-EM [1]
  • O [1]
  • O AND SITUS [1]
  • RELION [1]
  • SITUS, AMIRA [1]

Microscope

  • FEI POLARA 300 [26]
  • FEI TECNAI F30 [16]
  • FEI/PHILIPS CM200FEG [10]
  • FEI TECNAI F20 [9]
  • JEOL 2100F [5]
  • FEI TECNAI 20 [1]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [67]
  • LAB6 [1]

Film or detector model

  • KODAK SO-163 FILM [64]
  • GATAN K2 4K X 4K [1]

External links

  • PDB [68]
  • UniProt [17]
  • AlphaFold DB [13]
  • PDBe-Kb [12]
  • InterPro [5]
  • EMPIAR [4]
  • Gene Ontology [3]
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Showing 1 - 10 of 68. Page 1 of 7
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EMD-6390
Download Map
3D View
Tubulin cofactors-D,E and Arl2-Q73L GTPase form a stable heterotrimeric chaperone
Negative staining
CryoEM
Release date: Sept. 23, 2015
Resolution: 24.0 Å
EM Method: Single-particle

Nithianantham S, Le S, Seto E, Jia W, Leary J, Corbett KD, Moore JK, Al-Bassam J

eLife (2015) 4 [ Pubmed: 26208336 DOI: doi:10.7554/eLife.08811 ]

EMD-6391
Download Map
3D View
Tubulin cofactors-D,E N-GFP and Arl2-Q73L GTPase form a stable heterotrimeric chaperone
Negative staining
CryoEM
Release date: Sept. 23, 2015
Resolution: 24.0 Å
EM Method: Single-particle

Nithianantham S, Le S, Seto E, Jia W, Leary J, Corbett KD, Moore JK, Al-Bassam J

eLife (2015) 4 [ Pubmed: 26208336 DOI: doi:10.7554/eLife.08811 ]

EMD-6392
Download Map
3D View
Raw data
EMPIAR-10035
Structural basis for TBC-DEG assembly with soluble tubulin dimer
Negative staining
CryoEM
Release date: Sept. 23, 2015
Resolution: 24.0 Å
EM Method: Single-particle

Nithianantham S, Le S, Seto E, Jia W, Leary J, Corbett KD, Moore JK, Al-Bassam J

eLife (2015) 4 [ Pubmed: 26208336 DOI: doi:10.7554/eLife.08811 ]

EMD-6393
Download Map
3D View
Raw data
EMPIAR-10034
Structural basis for TBC-DEG assembly with TBCC and soluble tubulin dimer
Negative staining
CryoEM
Release date: Sept. 23, 2015
Resolution: 24.0 Å
EM Method: Single-particle

Nithianantham S, Le S, Seto E, Jia W, Leary J, Corbett KD, Moore JK, Al-Bassam J

eLife (2015) 4 [ Pubmed: 26208336 DOI: doi:10.7554/eLife.08811 ]

EMD-6418
Download Map
3D View
Local map for cetral region of the yeast spliceosome at 3.57 angstrom resolution
CryoEM
Release date: Sept. 16, 2015
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 3jb9
Q-score: 0.207
Similar entry percentile: 3%

Yan C, Hang J, Wan R, Huang M, Wong C, Shi Y

Science (2015) 349 pp. 1182-1191 [ DOI: doi:10.1126/science.aac7629 Pubmed: 26292707 ]

EMD-2993
Download Map
3D View
Structural rearrangements in the phage head-to-tail interface during assembly and infection
CryoEM
Release date: June 3, 2015
Resolution: 7.6 Å
EM Method: Single-particle
Fitted PDBs: 5a20
Q-score: 0.097
Similar entry percentile: 24%

Chaban Y, Lurz R, Brasiles S, Cornilleau C, Karreman M, Zinn-Justin S, Tavares P, Orlova EV

PNAS (2015) 112 pp. 7009-7014 [ DOI: doi:10.1073/pnas.1504039112 Pubmed: 25991862 ]

EMD-2994
Download Map
3D View
Structure of bacteriophage SPP1 head-to-tail interface without DNA and tape measure protein
CryoEM
Release date: June 3, 2015
Resolution: 7.2 Å
EM Method: Single-particle
Fitted PDBs: 5a21
Q-score: 0.155
Similar entry percentile: 54%

Chaban Y, Lurz R, Brasiles S, Cornilleau C, Karreman M, Zinn-Justin S, Tavares P, Orlova EV

PNAS (2015) 112 pp. 7009-7014 [ DOI: doi:10.1073/pnas.1504039112 Pubmed: 25991862 ]

EMD-6329
Download Map
3D View
Electron cryo-microscopy of the 73S Neurospora crassa mitochondrial ribosome
CryoEM
Release date: May 13, 2015
Resolution: 7.5 Å
EM Method: Single-particle

Van der Sluis EO, Bauerschmitt H, Becker T, Mielke T, Frauenfeld J, Berninghausen O, Neupert W, Herrmann JM, Beckmann R

Genome Biol Evol (2015) 7 pp. 1235-1251 [ DOI: doi:10.1093/gbe/evv061 Pubmed: 25861818 ]

EMD-2320
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3D View
CryoEM Structure of keyhole limpet hemocyanin isoform 2 KLH2
CryoEM
Release date: March 12, 2014
Resolution: 10.4 Å
EM Method: Single-particle

Gatsogiannis C, Schnittger E, Markl SJ, Depoix F, Markl J

To Be Published

EMD-2526
Download Map
3D View
Raw data
EMPIAR-10006
The electron crystallography structure of the cAMP-bound potassium channel MloK1
CryoEM
Release date: Jan. 15, 2014
Resolution: 7.0 Å
EM Method: Electron Crystallography
Fitted PDBs: 4chv
Q-score: 0.161
Similar entry percentile: 54%

Kowal J, Chami M, Baumgartner P, Arheit M, Chiu P-L, Rangl M, Scheuring S, Schroeder GF, Nimigean CM, Stahlberg H

Nat Commun (2014) 5 pp. 3106- [ DOI: doi:10.1038/ncomms4106 Pubmed: 24469021 ]

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Filter By

Current Database

  • EMDB [68]

Current status

  • REL [68]

Sample type

  • Sample [68]
  • Protein [45]
  • Complex [37]
  • RNA [8]
  • Ligand [4]

Organism

  • Saccharomyces cerevisiae [17]
  • Escherichia coli [13]
  • Thermus thermophilus [5]
  • Triticum sp. [5]
  • Oryctolagus cuniculus [4]
  • Yersinia enterocolitica [3]
  • Bacillus phage spp1 [2]
  • Thermus thermophilus [2]
  • Rhizobium loti [2]
  • Megathura crenulata [2]
  • Limulus polyphemus [2]
  • Homo sapiens [2]
  • Mammalian orthorubulavirus 5 [1]
  • Pseudomonas savastanoi [1]
  • Synechococcus elongatus [1]
  • Nautilus pompilius [1]
  • Triticum aestivum [1]
  • Schizosaccharomyces pombe [1]
  • Neurospora crassa [1]
  • Klebsiella pneumoniae [1]
  • Biomphalaria glabrata [1]
  • Canis lupus [1]
  • Canis sp. [1]

EM Method

  • Single-particle [65]
  • Electron Crystallography [3]

Resolution

  • ≥ 3Å and < 4Å [1]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [22]
  • ≥ 8Å and < 12Å [24]
  • ≥ 12Å and < 16Å [6]
  • ≥ 16Å and < 20Å [4]
  • ≥ 20Å and < 30Å [7]
  • ≥ 30Å [1]

Model molecular weight

  • 50-100 kDa [3]
  • 100-250 kDa [10]
  • 250-500 kDa [6]
  • 500-1000 kDa [1]
  • 1-2 MDa [3]
  • 2-5 MDa [10]
  • 5-10 MDa [1]

Release Date

  • 2015 [8]
  • 2014 [3]
  • 2013 [5]
  • 2012 [3]
  • 2011 [11]
  • 2010 [17]
  • 2009 [6]
  • 2008 [5]
  • 2007 [4]
  • 2006 [4]
  • 2005 [2]

Author by name

  • Mielke T [34]
  • Beckmann R [22]
  • Berninghausen O [14]
  • Becker T [13]
  • Armache JP [11]
  • Bhushan S [11]
  • Spahn CM [11]
  • Wilson DN [11]
  • Jarasch A [9]
  • Gartmann M [8]
  • Halic M [8]
  • Stahlberg H [8]
  • Chami M [7]
  • Giesebrecht J [7]
  • Schulten K [7]
  • Spahn CMT [7]
  • Westhof E [7]
  • Connell SR [6]
  • Funes S [6]
  • Gumbart J [6]
  • Jossinet F [6]
  • Nierhaus KH [6]
  • Blau M [5]
  • Engel A [5]
  • Gilmore R [5]
  • Klaholz BP [5]
  • Kowal J [5]
  • Loerke J [5]
  • Mandon E [5]
  • Mandon EC [5]
  • Markl J [5]
  • Papai G [5]
  • Ruhlmann C [5]
  • Schultz P [5]
  • Tripathi MK [5]
  • Weil PA [5]
  • Al-bassam J [4]
  • Altman R [4]
  • Altman RB [4]
  • Blanchard S [4]
  • Blanchard SC [4]
  • Budkevich T [4]
  • Corbett KD [4]
  • Frauenfeld J [4]
  • Fucini P [4]
  • Jia W [4]
  • Layer JH [4]
  • Le S [4]
  • Leary J [4]
  • Marzi S [4]
  • Moore JK [4]
  • Muller SA [4]
  • Munro J [4]
  • Munro JB [4]
  • Myasnikov AG [4]
  • Nierhaus K [4]
  • Nithianantham S [4]
  • Penczek PA [4]
  • Pool MR [4]
  • Seto E [4]
  • Sinning I [4]
  • Spahn C [4]
  • Yusupov M [4]
  • Amstutz M [3]
  • Arheit M [3]
  • Castano-diez D [3]
  • Cornelis GR [3]
  • Depoix F [3]
  • Gatsogiannis C [3]
  • Gualerzi CO [3]
  • Kudryashev M [3]
  • Muller AS [3]
  • Ringler P [3]
  • Seidelt B [3]
  • Simonetti A [3]
  • Wild K [3]
  • Baumgartner P [2]
  • Beatrix B [2]
  • Brasiles S [2]
  • Bruenner M [2]
  • Chaban Y [2]
  • Chiu P-L [2]
  • Cornilleau C [2]
  • Dabrowski M [2]
  • Doenhoefer A [2]
  • Giuliodori AM [2]
  • Gruetter MG [2]
  • Hartmann RK [2]
  • Hildebrand PW [2]
  • Hoffman T [2]
  • Hoffmann T [2]
  • Karreman M [2]
  • Lurz R [2]
  • Meissner U [2]
  • Mikolajka A [2]
  • Nimigean CM [2]
  • Onuchic J [2]
  • Orlova EV [2]
  • Ramrath DJ [2]
  • Ramrath DJF [2]

Author by ORCID

  • Armache JP [11]
  • Bhushan S [11]
  • Wilson DN [11]
  • Stahlberg H [8]
  • Connell SR [6]
  • Funes S [6]
  • Papai G [5]
  • Loerke J [5]
  • Schultz P [5]
  • Tripathi MK [5]
  • Kowal J [5]
  • Yusupov M [4]
  • Corbett KD [4]
  • Marzi S [4]
  • Fucini P [4]
  • Blanchard SC [4]
  • Pool MR [4]
  • Simonetti A [3]
  • Castano-diez D [3]
  • Kudryashev M [3]
  • Chiu P-L [2]
  • Tavares P [2]
  • Gatsogiannis C [2]
  • Nimigean CM [2]
  • Giuliodori AM [2]
  • Topf M [2]
  • Yusupova G [2]
  • Karreman M [2]
  • Schroeder GF [2]
  • Dabrowski M [2]
  • Orlova EV [2]
  • Scheuring S [2]
  • Starosta AL [2]
  • Villa E [2]
  • Cornilleau C [2]
  • Scheerer P [1]
  • Wriggers W [1]
  • Beatrix B [1]
  • Ludwig K [1]
  • Pozidis C [1]
  • Hayer-hartl M [1]
  • Serganov A [1]
  • Sander B [1]
  • Bracher A [1]
  • Yan C [1]
  • Soding J [1]
  • Sprink T [1]
  • Diaconu M [1]
  • Economou A [1]
  • Habeck M [1]
  • Wahl MC [1]
  • Rochel N [1]
  • Fischer N [1]
  • Ramakrishnan V [1]
  • Saschenbrecker S [1]
  • Murphy FV [1]
  • Boesen T [1]
  • Burmester T [1]
  • Saur M [1]
  • Weir JR [1]
  • Veit M [1]
  • Pedersen JS [1]
  • Ivanov P [1]
  • Wang H [1]
  • Rodnina MV [1]
  • Moeller A [1]
  • Moeller V [1]
  • Kinzy TG [1]
  • Shi Y [1]
  • Werten S [1]
  • Meesters C [1]
  • Golas MM [1]
  • Tenzer S [1]
  • Yokoyama S [1]
  • Innis CA [1]
  • Zachariae U [1]
  • Fabbretti A [1]

Journal

  • NATURE [13]
  • SCIENCE [9]
  • NAT STRUCT MOL BIOL [8]
  • J MOL BIOL [5]
  • MOL CELL [5]
  • STRUCTURE [5]
  • ELIFE [4]
  • PNAS [4]
  • CELL [3]
  • EMBO J [2]
  • NAT COMMUN [2]
  • PLOS BIOL [2]
  • GENOME BIOL EVOL [1]
  • J BIOL CHEM [1]
  • J VIROL [1]
  • MOL MICROBIOL [1]
  • PLOS ONE [1]
  • TO BE PUBLISHED [1]

Software

  • SPIDER [35]
  • IMAGIC [6]
  • IMAGIC, SPIDER [5]
  • IMAGIC-5 [5]
  • CHIMERA [4]
  • SPIDER, EMAN2 [4]
  • 2DX [3]
  • EMAN2 [3]
  • SITUS [3]
  • CHIMERA, VEDA UROX , MODELLER FLEX-EM [2]
  • GROMACS [2]
  • IMAGIC, SPIDER, EMAN [2]
  • PROGRAM O [2]
  • AMIRA 3.1, TGS SOFTWARE [1]
  • BKPR [1]
  • EMAN [1]
  • EMAN1 [1]
  • EMAN1.9 [1]
  • FLEX-EM [1]
  • IMAGIC, PYMOL [1]
  • MANUAL [1]
  • MDFF [1]
  • MOD-EM AND FLEX-EM [1]
  • O [1]
  • O AND SITUS [1]
  • RELION [1]
  • SITUS, AMIRA [1]

Microscope

  • FEI POLARA 300 [26]
  • FEI TECNAI F30 [16]
  • FEI/PHILIPS CM200FEG [10]
  • FEI TECNAI F20 [9]
  • JEOL 2100F [5]
  • FEI TECNAI 20 [1]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [67]
  • LAB6 [1]

Film or detector model

  • KODAK SO-163 FILM [64]
  • GATAN K2 4K X 4K [1]

External links

  • PDB [68]
  • UniProt [17]
  • AlphaFold DB [13]
  • PDBe-Kb [12]
  • InterPro [5]
  • EMPIAR [4]
  • Gene Ontology [3]