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MicroED

Filter By

Current Database

  • EMDB [140]
  • EMPIAR [3]

Current status

  • REL [143]

Sample type

  • Protein [123]
  • Complex [107]
  • Ligand [105]
  • Cellular component [27]
  • Sample [6]

Organism

  • Parengyodontium album [54]
  • Synthetic construct [32]
  • Homo sapiens [17]
  • Gallus gallus [9]
  • Saccharomyces cerevisiae [4]
  • Escherichia coli [3]
  • Aeropyrum pernix [3]
  • Bos taurus [3]
  • Human immunodeficiency virus 1 [2]
  • Amycolatopsis orientalis [2]
  • Mus musculus [1]
  • Bacillus cereus [1]
  • Bacillus thermoproteolyticus [1]
  • Streptomyces azureus [1]
  • Hathewaya histolytica [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Pseudomonas syringae [1]
  • Thaumatococcus daniellii [1]
  • Hypocrea jecorina [1]
  • Spodoptera frugiperda [1]
  • Escherichia coli [1]

EM Method

  • Electron Crystallography [138]
  • Single-particle [1]
  • Tomography [1]

Resolution

  • < 2Å [65]
  • ≥ 2Å and < 3Å [27]
  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 0-50 kDa [112]
  • 50-100 kDa [6]
  • 100-250 kDa [1]

Release Date

  • 2026 [3]
  • 2025 [4]
  • 2024 [3]
  • 2023 [10]
  • 2022 [24]
  • 2021 [4]
  • 2020 [10]
  • 2019 [23]
  • 2018 [41]
  • 2016 [15]
  • 2015 [6]

Author by name

  • Gonen T [127]
  • Hattne J [106]
  • Martynowycz MW [92]
  • Shi D [47]
  • Rodriguez JA [46]
  • Clabbers MTB [33]
  • Gallagher-jones M [24]
  • Glynn C [24]
  • Zee CT [24]
  • Sawaya MR [21]
  • Cascio D [20]
  • Reyes FE [18]
  • Unge J [17]
  • Nannenga BL [14]
  • Zhao W [13]
  • Eisenberg DS [12]
  • Jensen GJ [12]
  • Rodriguez J [12]
  • Eisenberg D [11]
  • Fulton TJ [11]
  • Jones CG [11]
  • Nelson HM [11]
  • Stoltz BM [11]
  • Fulton T [10]
  • Li X [10]
  • Zhou H [10]
  • Seidler P [9]
  • De La Cruz Mj [9]
  • Calero G [8]
  • Hinck AP [8]
  • Hinck CS [8]
  • Kim SK [8]
  • Luo Z [8]
  • Nicolas WJ [8]
  • Shiriaeva A [8]
  • Weiss SC [8]
  • Li D [6]
  • Liu C [6]
  • Luo F [6]
  • Weaver SJ [6]
  • Arnold FH [5]
  • Danelius E [5]
  • Jiang L [5]
  • Collazo MJ [4]
  • Guenther EL [4]
  • Boutet S [3]
  • Boyer DR [3]
  • Brewster AS [3]
  • Bu G [3]
  • Evans JE [3]
  • Gillman C [3]
  • Glabe CG [3]
  • Krotee P [3]
  • Martynoqycz MW [3]
  • Novikova IV [3]
  • Philipp S [3]
  • Porter NJ [3]
  • Sauter NK [3]
  • Unge JT [3]
  • Arbing MA [2]
  • Carroni M [2]
  • Chrustowicz J [2]
  • Dick M [2]
  • Fan Q [2]
  • Griner S [2]
  • Guenther E [2]
  • Hogbom M [2]
  • Ivanova M [2]
  • Ivanova MI [2]
  • Johnson L [2]
  • Johnson LM [2]
  • Krotee PAL [2]
  • Lebrette H [2]
  • Leslie AG [2]
  • Leslie AGW [2]
  • Li L [2]
  • Liu J [2]
  • Mao J [2]
  • Messerschmidt M [2]
  • Miao J [2]
  • Nannenga B [2]
  • Oskarsson ME [2]
  • Penczek PA [2]
  • Powell SM [2]
  • Purdy MD [2]
  • Reyes F [2]
  • Ruma YN [2]
  • Sangwan S [2]
  • Sarai NS [2]
  • Taberman H [2]
  • Trinh H [2]
  • Wang J [2]
  • Westermark GT [2]
  • Whitelegge J [2]
  • Wu C [2]
  • Wu S [2]
  • Xu H [2]
  • Xue H [2]
  • Yeager M [2]
  • Zhang M [2]

Author by ORCID

  • Hattne J [105]
  • Martynowycz MW [89]
  • Gonen T [39]
  • Clabbers MTB [27]
  • Gallagher-jones M [24]
  • Sawaya MR [21]
  • Unge J [15]
  • Fulton TJ [11]
  • Nannenga BL [9]
  • De La Cruz Mj [9]
  • Shiriaeva A [8]
  • Zhou H [6]
  • Li X [4]
  • Rodriguez JA [3]
  • Eisenberg DS [3]
  • Hogbom M [2]
  • Zou X [2]
  • Zhao J [2]
  • Fan Q [2]
  • Penczek PA [2]
  • Chrustowicz J [2]
  • Cascio D [2]
  • Arnold FH [2]
  • Dick M [2]
  • Griner S [2]
  • Sarai NS [2]
  • Leslie AG [2]
  • Wang J [2]
  • Carroni M [2]
  • Lebrette H [2]
  • Xu H [2]
  • Messerschmidt M [2]
  • Krotee P [2]
  • Trinh H [2]
  • Liu J [2]
  • Powell SM [2]
  • Sangwan S [2]
  • Novikova IV [1]
  • Miao J [1]
  • Nicolas WJ [1]
  • Iadanza MG [1]
  • Halaby SL [1]
  • Koralek JD [1]
  • Kubo M [1]
  • Nango E [1]
  • Brewster AS [1]
  • Biel JT [1]
  • Grey AC [1]
  • Richards LR [1]
  • Saelices L [1]
  • Ge P [1]
  • Gillman C [1]
  • Donaldson PJ [1]
  • Griner SL [1]
  • Lu J [1]
  • Fraser JS [1]
  • Cherezov V [1]
  • Carbajo S [1]
  • Van Der Donk Wa [1]
  • Thompson MC [1]
  • Sierra RG [1]
  • Hino T [1]
  • Millan C [1]
  • Yumoto F [1]
  • Wolff AM [1]
  • Woldeyes RA [1]
  • Liu S [1]
  • Ting CP [1]
  • Helguera GF [1]
  • Funk MA [1]
  • Van Den Bedem H [1]
  • Cohen AE [1]
  • Uson I [1]
  • Evans JE [1]
  • Novikova IV [1]
  • Nakane T [1]
  • Zhang Z [1]
  • Young ID [1]

Journal

  • STRUCTURE [38]
  • PNAS [23]
  • NAT METHODS [12]
  • ACS CENT SCI [11]
  • NAT COMMUN [11]
  • ANAL CHEM [6]
  • BIORXIV [5]
  • J AM CHEM SOC [5]
  • J STRUCT BIOL [5]
  • ELIFE [4]
  • IUCRJ [4]
  • J STRUCT BIOL X [4]
  • NAT STRUCT MOL BIOL [3]
  • TO BE PUBLISHED [3]
  • ANGEW CHEM INT ED ENGL [2]
  • NATURE [2]
  • STRUCT DYN. [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • COMMUN BIOL [1]
  • J APPL CRYSTALLOGR [1]
  • J BIOL CHEM [1]
  • SCIENCE [1]

Software

  • AIMLESS [46]
  • PHENIX [42]
  • MOLREP [16]
  • POINTLESS [16]
  • PHASER [12]
  • XSCALE [10]
  • REFMAC [8]
  • XDS [7]
  • SHELXD [5]
  • SCALEPACK [4]
  • CCP4 PACKAGE [1]
  • DIALS [1]
  • PHENIX.REFINE [1]

Microscope

  • FEI TECNAI F20 [55]
  • FEI TALOS ARCTICA [36]
  • FEI TITAN KRIOS [34]
  • TFS KRIOS [6]
  • FEI TECNAI 20 [5]
  • FEI TECNAI 12 [2]
  • TFS TALOS [2]

Electron Source

  • FIELD EMISSION GUN [138]
  • LAB6 [2]

Film or detector model

  • TVIPS TEMCAM-F416 4K X 4K [55]
  • FEI CETA 4K X 4K [47]
  • FEI FALCON IV 4K X 4K [22]
  • GATAN ULTRASCAN 4000 4K X 4K [6]
  • FEI EAGLE 4K X 4K [2]
  • FEI FALCON III 4K X 4K [2]
  • GATAN K3 6K X 4K [2]
  • GATAN K2 BASE 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]
  • GATAN K2 SUMMIT 4K X 4K [1]
  • TFS FALCON 4I 4K X 4K [1]

EMPIAR Experiment type

  • MICROED [3]

EMPIAR Image category

  • DIFFRACTION IMAGES [3]

External links

  • PDB [136]
  • ChEBI [101]
  • DrugBank [101]
  • ChEMBL [100]
  • UniProt [93]
  • AlphaFold DB [90]
  • PDBe-Kb [89]
  • InterPro [69]
  • Gene Ontology [68]
  • CATH [14]
  • Pfam [14]
  • Complex Portal [12]
  • EMDB [3]
  • EMPIAR [2]
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Showing 1 - 10 of 143. Page 1 of 15
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EMD-48783
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3D View
Structure of proteinase K from energy-filtered MicroED data using a 5 eV slit width
CryoEM
Release date: July 29, 2026
Resolution: 1.2 Å
EM Method: Electron Crystallography
Fitted PDBs: 9n0f

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

bioRxiv (2025) [ Pubmed: 40060527 DOI: doi:10.1101/2025.02.24.639939 ]

EMD-48784
Download Map
3D View
Structure of proteinase K from energy-filtered MicroED data using a 10 eV slit width
CryoEM
Release date: July 29, 2026
Resolution: 1.2 Å
EM Method: Electron Crystallography
Fitted PDBs: 9n0g

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

bioRxiv (2025) [ Pubmed: 40060527 DOI: doi:10.1101/2025.02.24.639939 ]

EMD-48785
Download Map
3D View
Structure of proteinase K from energy-filtered MicroED data using a 20 eV slit width
CryoEM
Release date: July 29, 2026
Resolution: 1.2 Å
EM Method: Electron Crystallography
Fitted PDBs: 9n0h

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

bioRxiv (2025) [ Pubmed: 40060527 DOI: doi:10.1101/2025.02.24.639939 ]

EMD-70378
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3D View
MicroED structure of proteinase K without energy filtering
CryoEM
Release date: May 28, 2025
Resolution: 1.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 9odv
Q-score: 0.763
Similar entry percentile: 20%

Clabbers MTB, Gonen T

Struct Dyn. (2025) 12 pp. 034702-034702 [ DOI: doi:10.1063/4.0000755 Pubmed: 40370641 ]

EMD-70379
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3D View
MicroED structure of proteinase K with energy filtering
CryoEM
Release date: May 28, 2025
Resolution: 1.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 9odw
Q-score: 0.767
Similar entry percentile: 22%

Clabbers MTB, Gonen T

Struct Dyn. (2025) 12 pp. 034702-034702 [ DOI: doi:10.1063/4.0000755 Pubmed: 40370641 ]

EMD-45428
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3D View
MicroED structure of the human MP20 protein
CryoEM
Release date: May 21, 2025
Resolution: 3.5 Å
EM Method: Electron Crystallography
Fitted PDBs: 9cbv
Q-score: 0.471
Similar entry percentile: 66%

Nicolas WJ, Shiriaeva A, Martynowycz MW, Grey AC, Ruma YN, Donaldson PJ, Gonen T

Nat Commun (2025) 16 pp. 2977-2977 [ Pubmed: 40140346 DOI: doi:10.1038/s41467-025-57903-6 ]

EMD-46871
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3D View
Structure of proteinase K from energy-filtered MicroED data
CryoEM
Release date: March 19, 2025
Resolution: 1.09 Å
EM Method: Electron Crystallography
Fitted PDBs: 9dho

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

Nat Commun (2025) 16 pp. 2247-2247 [ Pubmed: 40050283 DOI: doi:10.1038/s41467-025-57425-1 ]

EMD-44453
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MicroED structure of bovine liver catalase with missing cone solved by suspended drop
CryoEM
Release date: Sept. 18, 2024
Resolution: 4.0 Å
EM Method: Electron Crystallography
Fitted PDBs: 9bdj
Q-score: 0.483
Similar entry percentile: 95%

Gillman C, Bu G, Danelius E, Hattne J, Nannenga BL, Gonen T

J Struct Biol X (2024) 9 pp. 100102-100102 [ DOI: doi:10.1016/j.yjsbx.2024.100102 Pubmed: 38962493 ]

EMD-45623
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3D View
MicroED structure of the C11 cysteine protease clostripain
CryoEM
Release date: Aug. 14, 2024
Resolution: 2.5 Å
EM Method: Electron Crystallography
Fitted PDBs: 9cip

Ruma YN, Bu G, Hattne J, Gonen T

J Struct Biol X (2024) 10 pp. 100107-100107 [ Pubmed: 39100863 DOI: doi:10.1016/j.yjsbx.2024.100107 ]

EMD-43144
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3D View
MicroED structure of SARS-CoV-2 main protease MPro/3CLPro with missing cone eliminated by suspended drop
CryoEM
Release date: July 17, 2024
Resolution: 2.15 Å
EM Method: Electron Crystallography
Fitted PDBs: 8vd7
Q-score: 0.717
Similar entry percentile: 92%

Gillman C, Bu G, Danelius E, Hattne J, Nannenga BL, Gonen T

J Struct Biol X (2024) 9 pp. 100102-100102 [ Pubmed: 38962493 DOI: doi:10.1016/j.yjsbx.2024.100102 ]

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Showing 1 - 10 of 143. Page 1 of 15
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Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [140]
  • EMPIAR [3]

Current status

  • REL [143]

Sample type

  • Protein [123]
  • Complex [107]
  • Ligand [105]
  • Cellular component [27]
  • Sample [6]

Organism

  • Parengyodontium album [54]
  • Synthetic construct [32]
  • Homo sapiens [17]
  • Gallus gallus [9]
  • Saccharomyces cerevisiae [4]
  • Escherichia coli [3]
  • Aeropyrum pernix [3]
  • Bos taurus [3]
  • Human immunodeficiency virus 1 [2]
  • Amycolatopsis orientalis [2]
  • Mus musculus [1]
  • Bacillus cereus [1]
  • Bacillus thermoproteolyticus [1]
  • Streptomyces azureus [1]
  • Hathewaya histolytica [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Pseudomonas syringae [1]
  • Thaumatococcus daniellii [1]
  • Hypocrea jecorina [1]
  • Spodoptera frugiperda [1]
  • Escherichia coli [1]

EM Method

  • Electron Crystallography [138]
  • Single-particle [1]
  • Tomography [1]

Resolution

  • < 2Å [65]
  • ≥ 2Å and < 3Å [27]
  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 0-50 kDa [112]
  • 50-100 kDa [6]
  • 100-250 kDa [1]

Release Date

  • 2026 [3]
  • 2025 [4]
  • 2024 [3]
  • 2023 [10]
  • 2022 [24]
  • 2021 [4]
  • 2020 [10]
  • 2019 [23]
  • 2018 [41]
  • 2016 [15]
  • 2015 [6]

Author by name

  • Gonen T [127]
  • Hattne J [106]
  • Martynowycz MW [92]
  • Shi D [47]
  • Rodriguez JA [46]
  • Clabbers MTB [33]
  • Gallagher-jones M [24]
  • Glynn C [24]
  • Zee CT [24]
  • Sawaya MR [21]
  • Cascio D [20]
  • Reyes FE [18]
  • Unge J [17]
  • Nannenga BL [14]
  • Zhao W [13]
  • Eisenberg DS [12]
  • Jensen GJ [12]
  • Rodriguez J [12]
  • Eisenberg D [11]
  • Fulton TJ [11]
  • Jones CG [11]
  • Nelson HM [11]
  • Stoltz BM [11]
  • Fulton T [10]
  • Li X [10]
  • Zhou H [10]
  • Seidler P [9]
  • De La Cruz Mj [9]
  • Calero G [8]
  • Hinck AP [8]
  • Hinck CS [8]
  • Kim SK [8]
  • Luo Z [8]
  • Nicolas WJ [8]
  • Shiriaeva A [8]
  • Weiss SC [8]
  • Li D [6]
  • Liu C [6]
  • Luo F [6]
  • Weaver SJ [6]
  • Arnold FH [5]
  • Danelius E [5]
  • Jiang L [5]
  • Collazo MJ [4]
  • Guenther EL [4]
  • Boutet S [3]
  • Boyer DR [3]
  • Brewster AS [3]
  • Bu G [3]
  • Evans JE [3]
  • Gillman C [3]
  • Glabe CG [3]
  • Krotee P [3]
  • Martynoqycz MW [3]
  • Novikova IV [3]
  • Philipp S [3]
  • Porter NJ [3]
  • Sauter NK [3]
  • Unge JT [3]
  • Arbing MA [2]
  • Carroni M [2]
  • Chrustowicz J [2]
  • Dick M [2]
  • Fan Q [2]
  • Griner S [2]
  • Guenther E [2]
  • Hogbom M [2]
  • Ivanova M [2]
  • Ivanova MI [2]
  • Johnson L [2]
  • Johnson LM [2]
  • Krotee PAL [2]
  • Lebrette H [2]
  • Leslie AG [2]
  • Leslie AGW [2]
  • Li L [2]
  • Liu J [2]
  • Mao J [2]
  • Messerschmidt M [2]
  • Miao J [2]
  • Nannenga B [2]
  • Oskarsson ME [2]
  • Penczek PA [2]
  • Powell SM [2]
  • Purdy MD [2]
  • Reyes F [2]
  • Ruma YN [2]
  • Sangwan S [2]
  • Sarai NS [2]
  • Taberman H [2]
  • Trinh H [2]
  • Wang J [2]
  • Westermark GT [2]
  • Whitelegge J [2]
  • Wu C [2]
  • Wu S [2]
  • Xu H [2]
  • Xue H [2]
  • Yeager M [2]
  • Zhang M [2]

Author by ORCID

  • Hattne J [105]
  • Martynowycz MW [89]
  • Gonen T [39]
  • Clabbers MTB [27]
  • Gallagher-jones M [24]
  • Sawaya MR [21]
  • Unge J [15]
  • Fulton TJ [11]
  • Nannenga BL [9]
  • De La Cruz Mj [9]
  • Shiriaeva A [8]
  • Zhou H [6]
  • Li X [4]
  • Rodriguez JA [3]
  • Eisenberg DS [3]
  • Hogbom M [2]
  • Zou X [2]
  • Zhao J [2]
  • Fan Q [2]
  • Penczek PA [2]
  • Chrustowicz J [2]
  • Cascio D [2]
  • Arnold FH [2]
  • Dick M [2]
  • Griner S [2]
  • Sarai NS [2]
  • Leslie AG [2]
  • Wang J [2]
  • Carroni M [2]
  • Lebrette H [2]
  • Xu H [2]
  • Messerschmidt M [2]
  • Krotee P [2]
  • Trinh H [2]
  • Liu J [2]
  • Powell SM [2]
  • Sangwan S [2]
  • Novikova IV [1]
  • Miao J [1]
  • Nicolas WJ [1]
  • Iadanza MG [1]
  • Halaby SL [1]
  • Koralek JD [1]
  • Kubo M [1]
  • Nango E [1]
  • Brewster AS [1]
  • Biel JT [1]
  • Grey AC [1]
  • Richards LR [1]
  • Saelices L [1]
  • Ge P [1]
  • Gillman C [1]
  • Donaldson PJ [1]
  • Griner SL [1]
  • Lu J [1]
  • Fraser JS [1]
  • Cherezov V [1]
  • Carbajo S [1]
  • Van Der Donk Wa [1]
  • Thompson MC [1]
  • Sierra RG [1]
  • Hino T [1]
  • Millan C [1]
  • Yumoto F [1]
  • Wolff AM [1]
  • Woldeyes RA [1]
  • Liu S [1]
  • Ting CP [1]
  • Helguera GF [1]
  • Funk MA [1]
  • Van Den Bedem H [1]
  • Cohen AE [1]
  • Uson I [1]
  • Evans JE [1]
  • Novikova IV [1]
  • Nakane T [1]
  • Zhang Z [1]
  • Young ID [1]

Journal

  • STRUCTURE [38]
  • PNAS [23]
  • NAT METHODS [12]
  • ACS CENT SCI [11]
  • NAT COMMUN [11]
  • ANAL CHEM [6]
  • BIORXIV [5]
  • J AM CHEM SOC [5]
  • J STRUCT BIOL [5]
  • ELIFE [4]
  • IUCRJ [4]
  • J STRUCT BIOL X [4]
  • NAT STRUCT MOL BIOL [3]
  • TO BE PUBLISHED [3]
  • ANGEW CHEM INT ED ENGL [2]
  • NATURE [2]
  • STRUCT DYN. [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • COMMUN BIOL [1]
  • J APPL CRYSTALLOGR [1]
  • J BIOL CHEM [1]
  • SCIENCE [1]

Software

  • AIMLESS [46]
  • PHENIX [42]
  • MOLREP [16]
  • POINTLESS [16]
  • PHASER [12]
  • XSCALE [10]
  • REFMAC [8]
  • XDS [7]
  • SHELXD [5]
  • SCALEPACK [4]
  • CCP4 PACKAGE [1]
  • DIALS [1]
  • PHENIX.REFINE [1]

Microscope

  • FEI TECNAI F20 [55]
  • FEI TALOS ARCTICA [36]
  • FEI TITAN KRIOS [34]
  • TFS KRIOS [6]
  • FEI TECNAI 20 [5]
  • FEI TECNAI 12 [2]
  • TFS TALOS [2]

Electron Source

  • FIELD EMISSION GUN [138]
  • LAB6 [2]

Film or detector model

  • TVIPS TEMCAM-F416 4K X 4K [55]
  • FEI CETA 4K X 4K [47]
  • FEI FALCON IV 4K X 4K [22]
  • GATAN ULTRASCAN 4000 4K X 4K [6]
  • FEI EAGLE 4K X 4K [2]
  • FEI FALCON III 4K X 4K [2]
  • GATAN K3 6K X 4K [2]
  • GATAN K2 BASE 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]
  • GATAN K2 SUMMIT 4K X 4K [1]
  • TFS FALCON 4I 4K X 4K [1]

EMPIAR Experiment type

  • MICROED [3]

EMPIAR Image category

  • DIFFRACTION IMAGES [3]

External links

  • PDB [136]
  • ChEBI [101]
  • DrugBank [101]
  • ChEMBL [100]
  • UniProt [93]
  • AlphaFold DB [90]
  • PDBe-Kb [89]
  • InterPro [69]
  • Gene Ontology [68]
  • CATH [14]
  • Pfam [14]
  • Complex Portal [12]
  • EMDB [3]
  • EMPIAR [2]