Filter By
Current Database
- EMDB [2731]
- EMPIAR [1483]
Current status
- REL [4214]
Sample type
- Complex [2201]
- Protein [1882]
- Ligand [893]
- RNA [200]
- Sample [177]
- DNA [164]
- Virus [152]
- Cellular component [119]
- Tissue [111]
- Cell [77]
- Other [8]
Organism
- Homo sapiens [1138]
- Saccharomyces cerevisiae [239]
- Bos taurus [201]
- Mus musculus [154]
- Synthetic construct [140]
- Escherichia coli [110]
- Rattus norvegicus [79]
- Severe acute respiratory syndrome coronavirus [78]
- Mycolicibacterium smegmatis [65]
- Lama glama [63]
- Sus scrofa [62]
- Escherichia coli [49]
- Saccharomyces cerevisiae [42]
- Drosophila melanogaster [42]
- Human immunodeficiency virus 1 [41]
- Simian virus 40 [33]
- Dengue virus [29]
- Oryctolagus cuniculus [29]
- Influenza a virus [25]
- Dengue virus [21]
- Paracoccus denitrificans [21]
- Gallus gallus [19]
- Enterovirus a [18]
- Camelidae mixed library [17]
- Campylobacter jejuni [17]
- (no species) [15]
- Hepatitis b virus [14]
- Staphylococcus aureus [14]
- Kluyveromyces lactis [14]
- Shigella flexneri [14]
- (no species) [14]
- Photorhabdus thracensis [13]
- Thermus thermophilus [13]
- Salmonella enterica [12]
- Chlorocebus aethiops [12]
- Influenza a virus [11]
- Enterobacteria phage t4 [10]
- Thermus thermophilus [10]
- Dna molecule [10]
- Rotavirus a [10]
- Caenorhabditis elegans [10]
- Canis lupus [10]
- (no species) [9]
- Foot-and-mouth disease virus [9]
- Flavobacterium johnsoniae [9]
- Escherichia coli [9]
- Sus scrofa [9]
- Flavobacterium johnsoniae [9]
- Pseudomonas phage phi6 [8]
- Trypanosoma brucei [8]
- Influenza c virus [7]
- Streptococcus pyogenes [7]
- Thermoplasma acidophilum [7]
- Nitrosopumilus maritimus [7]
- Dictyostelium discoideum [7]
- Tetrahymena thermophila [7]
- Xenopus laevis [7]
- Canis lupus [7]
- Toxoplasma gondii [6]
- Pseudomonas virus prd1 [5]
- Dengue virus [5]
- Cricket paralysis virus [5]
- Orthoebolavirus zairense [5]
- Hantaan orthohantavirus [5]
- Haloferax volcanii [5]
- Bordetella pertussis [5]
- Klebsiella pneumoniae [5]
- Aedes albopictus [5]
- Escherichia coli [5]
- African swine fever virus [4]
- Influenza c virus [4]
- Gemmatimonas phototrophica [4]
- Bacillus thuringiensis [4]
- Corynebacterium glutamicum [4]
- Mycobacterium tuberculosis [4]
- Human respiratory syncytial virus [4]
- Candidatus heimdallarchaeota archaeon [4]
- Nitratifractor salsuginis [4]
- Pseudomonas aeruginosa [4]
- Lentivirus humimdef1 [4]
- Komagataella phaffii [4]
- Komagataella pastoris [4]
- Chaetomium thermophilum [4]
- Mycobacterium tuberculosis [4]
- Escherichia coli [4]
- Adeno-associated dependoparvovirus a [4]
- Salmonella enterica [4]
- Pan troglodytes [4]
- Felis catus [4]
- Equus caballus [4]
- Escherichia virus t7 [3]
- Mammalian orthoreovirus [3]
- Enterovirus c [3]
- Severe acute respiratory syndrome coronavirus [3]
- Trypanosoma brucei [3]
- Pseudomonas aeruginosa [3]
- Visna-maedi virus [3]
- Bacteroides thetaiotaomicron [3]
- Sulfolobus acidocaldarius [3]
- Thermus thermophilus [3]
EM Method
- Single-particle [2101]
- Helical reconstruction [355]
- Subtomogram averaging [164]
- Tomography [82]
- Electron Crystallography [29]
Resolution
- < 2Å [37]
- ≥ 2Å and < 3Å [600]
- ≥ 3Å and < 4Å [1100]
- ≥ 4Å and < 5Å [309]
- ≥ 5Å and < 6Å [60]
- ≥ 6Å and < 8Å [139]
- ≥ 8Å and < 12Å [152]
- ≥ 12Å and < 16Å [61]
- ≥ 16Å and < 20Å [75]
- ≥ 20Å and < 30Å [76]
- ≥ 30Å [34]
Model molecular weight
- 0-50 kDa [43]
- 50-100 kDa [113]
- 100-250 kDa [394]
- 250-500 kDa [483]
- 500-1000 kDa [233]
- 1-2 MDa [176]
- 2-5 MDa [87]
- 5-10 MDa [42]
- > 10 MDa [45]
Release Date
- 2026 [468]
- 2025 [640]
- 2024 [506]
- 2023 [640]
- 2022 [450]
- 2021 [570]
- 2020 [304]
- 2019 [160]
- 2018 [113]
- 2017 [76]
- 2016 [88]
- 2015 [68]
- 2014 [36]
- 2013 [11]
- 2012 [6]
- 2011 [12]
- 2010 [8]
- 2009 [11]
- 2008 [2]
- 2007 [21]
- 2006 [7]
- 2005 [5]
- 2004 [6]
- 2003 [2]
- 2002 [4]
Author by name
- Scheres SHW [305]
- Kotecha A [246]
- Murzin AG [232]
- Goedert M [224]
- Hirst J [175]
- Spikes TE [157]
- Walker JE [144]
- Lovestam S [143]
- Montgomery MG [143]
- Mclaughlin SH [130]
- Ghetti B [126]
- Briggs JAG [122]
- Zhang Z [122]
- Carter AP [114]
- Bridges HR [108]
- Aricescu AR [106]
- Yin Z [102]
- Chung I [97]
- Stuart DI [94]
- Ramakrishnan V [92]
- Greber BJ [90]
- Garringer HJ [88]
- Malinauskas T [85]
- Feng J [84]
- Kimanius D [84]
- Barford D [83]
- Vidal R [82]
- Blaza JN [81]
- Naydenova K [80]
- Lowe J [76]
- Cushing VI [75]
- Ryskeldi-falcon B [73]
- Hasegawa M [72]
- Yeeles JTP [72]
- Nagai K [71]
- Ranson NA [71]
- Freund SMV [70]
- Yang J [69]
- Koh AF [68]
- Pollak MN [68]
- Fry EE [66]
- Wagstaff JL [65]
- Williams RL [65]
- Ali S [64]
- Duyvesteyn HME [64]
- Savva CG [64]
- Shi Y [64]
- Hardwick SW [63]
- Li D [62]
- Bahl AK [61]
- Barbazanges M [61]
- Barrett AGM [61]
- Bondke A [61]
- Jurgaityte K [61]
- Kroll SHB [61]
- Petri J [61]
- Ren J [61]
- Scheiper B [61]
- Greger IH [60]
- Russo CJ [59]
- Zhao Y [59]
- Bharat TAM [57]
- Jones ML [55]
- Lashley T [55]
- Zhou D [55]
- Newell KL [54]
- Rappsilber J [54]
- Zhang X [54]
- Qu K [53]
- Chirgadze DY [52]
- Lea SM [52]
- Potter CS [52]
- Shi J [52]
- Bourguet M [51]
- Carragher B [51]
- Baris Y [50]
- Grimes JM [50]
- Wilkinson ME [50]
- Yang Y [50]
- Arseni D [49]
- Carrique L [48]
- Ohashi Y [48]
- Zhang W [48]
- Deme JC [47]
- Wright JJ [47]
- Yoshida M [47]
- Mihaylov DB [45]
- Dessus AN [44]
- Noble AJ [44]
- Screaton GR [44]
- Murayama S [43]
- Passmore LA [43]
- Rosenthal PB [43]
- Tetter S [42]
- Zhang S [42]
- Boulanger J [41]
- Falcon B [41]
- Fodor E [41]
- Grba DN [41]
- Ho H [41]
Author by ORCID
- Kotecha A [220]
- Scheres SHW [210]
- Goedert M [146]
- Hirst J [142]
- Spikes TE [123]
- Mclaughlin SH [121]
- Walker JE [110]
- Montgomery MG [109]
- Briggs JAG [108]
- Carter AP [101]
- Yin Z [91]
- Bridges HR [90]
- Greber BJ [90]
- Aricescu AR [90]
- Ramakrishnan V [83]
- Feng J [83]
- Chung I [82]
- Barford D [75]
- Cushing VI [75]
- Blaza JN [71]
- Malinauskas T [71]
- Yeeles JTP [69]
- Freund SMV [67]
- Garringer HJ [66]
- Pollak MN [66]
- Ali S [64]
- Lowe J [63]
- Koh AF [62]
- Li D [62]
- Barbazanges M [61]
- Barrett AGM [61]
- Jurgaityte K [61]
- Greger IH [60]
- Ryskeldi-falcon B [59]
- Vidal R [58]
- Jones ML [55]
- Ghetti B [54]
- Zhou D [54]
- Zhang Z [54]
- Ranson NA [51]
- Bharat TAM [49]
- Yang J [49]
- Baris Y [49]
- Carrique L [48]
- Mihaylov DB [45]
- Hardwick SW [44]
- Ren J [44]
- Duyvesteyn HME [42]
- Russo CJ [41]
- Lea SM [40]
- Williams RL [39]
- Radford SE [39]
- Calabrese AN [39]
- Keown JR [38]
- Rosenthal PB [37]
- Zhang W [36]
- Fodor E [36]
- Ho H [35]
- Yang Y [35]
- Rappsilber J [34]
- Pardon E [34]
- Steyaert J [34]
- Xiong X [34]
- Hamdan SM [33]
- Alhudhali L [33]
- Arseni D [33]
- Hegde RS [33]
- Deme JC [33]
- Galej WP [33]
- Wright JJ [33]
- Fica SM [33]
- Tehseen M [33]
- Clark AR [33]
- Shahid T [33]
- De Biasio A [33]
- Danazumi AU [33]
- Chirgadze DY [32]
- Brown A [32]
- Stuart DI [32]
- Yamashita K [32]
- Ke Z [32]
- Fan H [32]
- Huang KA [31]
- Foglizzo M [31]
- Raunser S [31]
- Nguyen THD [31]
- Wang Z [31]
- Mentzer AJ [31]
- Van Knippenberg B [31]
- Temperton N [31]
- Jenkyn-bedford M [31]
- Grange M [31]
- Grba DN [31]
- Gautel M [31]
- Lok SM [31]
- Scheres SH [30]
- Ohashi Y [30]
- Qu K [30]
- Llacer JL [29]
- Spokaite S [29]
Journal
- NAT COMMUN [595]
- NATURE [540]
- SCIENCE [339]
- BIORXIV [312]
- TO BE PUBLISHED [295]
- PNAS [287]
- ELIFE [241]
- NAT STRUCT MOL BIOL [202]
- SCI ADV [171]
- CELL [133]
- MOL CELL [122]
- EMBO J [76]
- STRUCTURE [72]
- NAT MICROBIOL [46]
- CELL REP [41]
- COMMUN BIOL [37]
- PLOS PATHOG [35]
- J MOL BIOL [33]
- ACTA NEUROPATHOL [30]
- J STRUCT BIOL [29]
- NUCLEIC ACIDS RES [28]
- J CELL BIOL [26]
- NAT METHODS [26]
- ACTA CRYSTALLOGR D STRUCT BIOL [25]
- EMBO REP [25]
- DEV CELL [24]
- J BIOL CHEM [22]
- CELL HOST MICROBE [21]
- STRUCTURE (LONDON, ENGLAND : 1993) [19]
- J MED CHEM [17]
- J VIROL [17]
- COMMUNICATIONS BIOLOGY [16]
- PLOS BIOL [14]
- COMMUN. BIOL. [13]
- FEBS OPEN BIO [11]
- IUCRJ [11]
- J CELL SCI [11]
- CELL REP METHODS [10]
- CELL REPORTS METHODS [10]
- NAT CHEM BIOL [10]
- NAT CELL BIOL [9]
- NAT PROTOC [9]
- SCI REP [9]
- PLOS ONE [8]
- CURR BIOL [7]
- J STRUCT BIOL X [7]
- JOURNAL OF MEDICINAL CHEMISTRY [7]
- FEBS LETT [6]
- MBIO [6]
- NAT NEUROSCI [6]
- VIRUSES [6]
- BIOCHEM J [5]
- GENOME BIOL EVOL [5]
- J AM CHEM SOC [5]
- JOURNAL OF THE AMERICAN CHEMICAL SOCIETY [5]
- BIOCHIM BIOPHYS ACTA BIOENERG [4]
- BLOOD [4]
- CELL RES [4]
- ISCIENCE [4]
- J MICROSC [4]
- NEURON [4]
- NPJ VACCINES [4]
- STRUCT. [4]
- AUTOPHAGY [3]
- BIOPHYS REV [3]
- CELL REP MED [3]
- FRONT MOL BIOSCI [3]
- FRONTIERS [3]
- INT J MOL SCI [3]
- INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES [3]
- J BACTERIOL [3]
- MICROSCOPY [3]
- MOL BIOL CELL [3]
- NAT COMM [3]
- PROTEIN SCI [3]
- RES SQ [3]
- ACTA D [2]
- ADV MATER [2]
- ADV SCI [2]
- ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) [2]
- ANGEW CHEM INT ED ENGL [2]
- ARXIV [2]
- BIOCHEMISTRY [2]
- BMC METHODS [2]
- CELL DISCOV [2]
- COMMS.BIOL. [2]
- EMBO REPORTS [2]
- FRONT MICROBIOL [2]
- FRONTIERS IN MICROBIOLOGY [2]
- J GEN VIROL [2]
- J MUSCLE RES CELL MOTIL [2]
- LIFE SCI ALLIANCE [2]
- MICROSC MICROANAL [2]
- MSPHERE [2]
- NAT. COMM. [2]
- NUCLEIC ACIDS RESEARCH [2]
- OPEN BIOL [2]
- PNAS NEXUS [2]
- RESEARCH SQUARE [2]
- SCI SIGNAL [2]
Software
- RELION [1344]
- CRYOSPARC [556]
- CTFFIND [304]
- GCTF [96]
- MRC [47]
- WARP [47]
- IMOD [36]
- DYNAMO [23]
- NOVACTF [23]
- UCSF CHIMERAX [21]
- ETOMO [19]
- M [17]
- UCSF CHIMERA [17]
- CRYOLO [16]
- CTFFIND3, RELION [15]
- CHIMERA [14]
- ISOLDE [12]
- MATLAB [12]
- SIMPLE [11]
- AV3 [10]
- MRC, IMAGIC, SPIDER [9]
- SUBTOM [9]
- TOM [9]
- COOT [8]
- PHENIX [8]
- TOM TOOLBOX [8]
- CTFPHASEFLIP [7]
- MPSA [7]
- PEET [7]
- SITUS [7]
- CHIMERA, REFMAC [5]
- EMAN [5]
- EMAN2 [5]
- SPIDER [5]
- BSOFT [4]
- CTFFIND4, RELION [4]
- EMBL-ICOS, MRC [4]
- IMAGIC [4]
- IMAGIC SPIDER MRC [4]
- CHIMERA, COOT, REFMAC [3]
- CISTEM [3]
- EMCLARITY [3]
- IMOD, TOMO3D [3]
- RELION, CTFFIND3, EMAN2 [3]
- SPIDER, IMAGIC-5, MRC [3]
- 2DX, AND, MRC [2]
- CHIMERA, COOT [2]
- CNS [2]
- CTFFIND, EMAN2, SPRING [2]
- DIREX [2]
- EM3DR2, PFT2, CTFMIX [2]
- FREALIGN [2]
- JSPR [2]
- MRC IMAGE PROCESSING PACKAGE [2]
- MRC, AND, OWN, PROGRAMS [2]
- MRC, EMAN [2]
- MRC, IMAGIC, RELION, 1.3 [2]
- MRC, IMOD, IVE [2]
- MRC, SPIDER, FREALIGN [2]
- O [2]
- PYTOM [2]
- SCIPION [2]
- SPIDER, IMAGIC [2]
- SPIDER, IMAGIC, EMAN [2]
- SPIDER, MRC, EMAN, IMAGIC4D [2]
- URO [2]
- UROX AND CHIMERA [2]
- X-PLOR AND EMFIT M. ROSSMANN CHENG, R., KUHN, R., OLSON, N., ROSSMANN, M., AND BAKER, T. 1995 . NUCLEOCAPSID AND GLYCOPROTEIN ORGANIZATION IN AN ENVELOPED VIRUS. CELL 80, 621-630. [2]
- 3DMOD [1]
- BUSTER-TNT [1]
- CHIMERA AND COOT [1]
- CHIMERA, COOT, AND REFMAC [1]
- CHIMERA, SITUS [1]
- CHIMERA,SITUS [1]
- COLORES [1]
- EMFIT [1]
- EMFIT M. ROSSMANN CHENG, R., KUHN, R., OLSON, N., ROSSMANN, M., AND BAKER, T. 1995 . NUCLEOCAPSID AND GLYCOPROTEIN ORGANIZATION IN AN ENVELOPED VIRUS. CELL 80, 621-630. [1]
- FOLDHUNTER [1]
- FOLDHUNTER AND HOMEMADE SOFTWARE [1]
- IMAGIC, FREALIGN, ROTAN [1]
- IMAGIC, SPIDER [1]
- IMOD, TOMO3D, RELION [1]
- IN-HOUSE SOFTWARE BASED ON MRC SYSTEM [1]
- MRC AND HOME-MADE PROGRAMS [1]
- MRC AND HOME-MADE SOFTWARE [1]
- MRC AND SPIDER [1]
- MRC IMAGE2000 AND IMAGIC [1]
- MRC, CCP4, HOMEMADE [1]
- MRC, CTFFIND3, FREALIGN [1]
- MRC, EMAN, SPIDER [1]
- MRC, EMIP, CHIMERA [1]
- MRC, IMAGIC, FREALIGN [1]
- MRC, RELION, 1.3 [1]
- MRC, SUPRIM, PHOELIX, OTHER [1]
- MRC,IMRS [1]
- MRC,SPIDER,CORAN [1]
- NAMD [1]
- PFT3DR2, MRC [1]
- PHOELIX AND MRC [1]
- PROJALIGN [1]
Microscope
- FEI TITAN KRIOS [1694]
- TFS KRIOS [660]
- FEI POLARA 300 [97]
- TFS GLACIOS [73]
- FEI TECNAI F20 [40]
- FEI TALOS ARCTICA [28]
- JEOL KYOTO-3000SFF [17]
- FEI TITAN [14]
- FEI/PHILIPS CM120T [13]
- FEI/PHILIPS CM200FEG [13]
- JEOL CRYO ARM 300 [12]
- FEI TECNAI SPIRIT [11]
- JEOL 1400/HR YPS FEG [11]
- FEI TECNAI 12 [10]
- FEI TECNAI F30 [7]
- JEOL 1400 [5]
- FEI/PHILIPS CM200FEG/ST [4]
- JEOL 1200EXII [3]
- JEOL 3000SFF [3]
- FEI TECNAI 10 [2]
- JEOL 2100F [2]
- JEOL 2200FS [2]
- JEOL 3200FS [2]
- JEOL 4000EX [2]
- OTHER [2]
- FEI TECNAI 20 [1]
- FEI/PHILIPS CM200T [1]
- FEI/PHILIPS CM300FEG/T [1]
- JEOL 2011 [1]
- JEOL 4000 [1]
- TFS TALOS L120C [1]
Electron Source
- FIELD EMISSION GUN [2670]
- LAB6 [39]
- TUNGSTEN HAIRPIN [22]
- OTHER [1]
Film or detector model
- GATAN K3 BIOQUANTUM 6K X 4K [542]
- GATAN K3 6K X 4K [484]
- FEI FALCON IV 4K X 4K [393]
- GATAN K2 SUMMIT 4K X 4K [378]
- FEI FALCON III 4K X 4K [216]
- GATAN K2 QUANTUM 4K X 4K [203]
- TFS FALCON 4I 4K X 4K [197]
- FEI FALCON II 4K X 4K [117]
- KODAK SO-163 FILM [89]
- OTHER [32]
- GATAN K2 BASE 4K X 4K [14]
- DECTRIS SINGLA 1K X 1K [11]
- GATAN ULTRASCAN 4000 4K X 4K [9]
- DIRECT ELECTRON DE-64 8K X 8K [8]
- FEI EAGLE 2K X 2K [7]
- FEI EAGLE 4K X 4K [7]
- GATAN K3 BIOCONTINUUM 6K X 4K [6]
- GATAN ORIUS SC1000 4K X 2.7K [5]
- DIRECT ELECTRON DE-20 5K X 3K [4]
- FEI CETA 4K X 4K [4]
- GATAN K2 4K X 4K [4]
- TVIPS TEMCAM-F415 4K X 4K [4]
- TVIPS TEMCAM-F816 8K X 8K [3]
- FEI FALCON I 4K X 4K [2]
- GENERIC CCD [2]
- DIRECT ELECTRON APOLLO 4K X 4K [1]
- GATAN ULTRASCAN 1000 2K X 2K [1]
- GENERIC FILM [1]
- GENERIC GATAN [1]
- GENERIC GATAN 4K X 4K [1]
EMPIAR Experiment type
- EMDB [1392]
- EXCEPTION [20]
- FIB-SEM [19]
- SSET [15]
- SBF-SEM [13]
- CLXM [10]
- SXT [10]
- CLEM [3]
- IHM [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [834]
- MICROGRAPHS - SINGLE FRAME [527]
- TILT SERIES [281]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [149]
- RECONSTRUCTED VOLUMES [121]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [81]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [32]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [22]
- CLASS AVERAGES [12]
- SUBTOMOGRAMS [7]
- PARTICLE PICKING [3]
- STITCHED MAPS [3]
- ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
- DIFFRACTION IMAGES [1]
- SOFT X-RAY TOMOGRAMS [1]
External links
- PDB [2695]
- UniProt [1746]
- PDBe-Kb [1673]
- AlphaFold DB [1637]
- EMDB [1389]
- InterPro [1360]
- Gene Ontology [1340]
- Pfam [1292]
- ChEBI [854]
- ChEMBL [805]
- DrugBank [702]
- Complex Portal [592]
- EMPIAR [473]
- SCOP2 [45]
- CATH [20]
- BioImage Archive [13]
Similar entry percentile: 52%
Singh K, Harasimov K, Niakan KK, Carter A
To Be Published
Similar entry percentile: 90%
Singh K, Harasimov K, Niakan KK, Carter AP
To Be Published
Similar entry percentile: 96%
Singh K, Harasimov K, Niakan KK, Carter A
To Be Published
Similar entry percentile: 93%
Singh K, Harasimov K, Niakan KK, Carter A
To Be Published
Similar entry percentile: 90%
Singh K, Harasimov K, Niakan KK, Carter A
To Be Published
Resolution: 10.0 Å
EM Method: Subtomogram averaging
Singh K, Harasimov K, Niakan KK, Carter A
To Be Published
Similar entry percentile: 99%
Singh K, Harasimov K, Niakan KK, Carter A
To Be Published
Dataset size: 4.9 TB
Experiment type: EMDB
Narehood SM, Cook BD, Srisantitham S, Eng VH, Shiau AA, McGuire KL, Britt RD, Herzik MA, Tezcan FA
Nature (2025) 637 pp. 991-997 [ Pubmed: 39779844 DOI: 10.1038/s41586-024-08311-1 ]
- Unaligned multi-frame micrographs of Mo-nitrogenase and FeSII from Azotobacter vinelandii in presence of oxygen
- Gain file for motion correction of unaligned micrographs of Mo-nitrogenase and FeSII from Azotobacter vinelandii in presence of oxygen
- Aligned micrographs of Mo-nitrogenase and FeSII from Azotobacter vinelandii in presence of oxygen
Similar entry percentile: 6%
Hope J, Punch EK, Cook NJ, Singer MR, Joshi D, Singh PK, Nans A, Engelman AN, Cherepanov P
To Be Published
Resolution: 4.02 Å
EM Method: Single-particle
Foglizzo M, Datta A, Degtjarik O, Perera H, Liburd J, Sykora UM, Ganji RS, Wildsmith G, Chandler F, Campbell LJ, Calabrese AN, Greenberg RA, Zeqiraj E
Nat Commun (2026) [ ]
Filter By
Current Database
- EMDB [2731]
- EMPIAR [1483]
Current status
- REL [4214]
Sample type
- Complex [2201]
- Protein [1882]
- Ligand [893]
- RNA [200]
- Sample [177]
- DNA [164]
- Virus [152]
- Cellular component [119]
- Tissue [111]
- Cell [77]
- Other [8]
Organism
- Homo sapiens [1138]
- Saccharomyces cerevisiae [239]
- Bos taurus [201]
- Mus musculus [154]
- Synthetic construct [140]
- Escherichia coli [110]
- Rattus norvegicus [79]
- Severe acute respiratory syndrome coronavirus [78]
- Mycolicibacterium smegmatis [65]
- Lama glama [63]
- Sus scrofa [62]
- Escherichia coli [49]
- Saccharomyces cerevisiae [42]
- Drosophila melanogaster [42]
- Human immunodeficiency virus 1 [41]
- Simian virus 40 [33]
- Dengue virus [29]
- Oryctolagus cuniculus [29]
- Influenza a virus [25]
- Dengue virus [21]
- Paracoccus denitrificans [21]
- Gallus gallus [19]
- Enterovirus a [18]
- Camelidae mixed library [17]
- Campylobacter jejuni [17]
- (no species) [15]
- Hepatitis b virus [14]
- Staphylococcus aureus [14]
- Kluyveromyces lactis [14]
- Shigella flexneri [14]
- (no species) [14]
- Photorhabdus thracensis [13]
- Thermus thermophilus [13]
- Salmonella enterica [12]
- Chlorocebus aethiops [12]
- Influenza a virus [11]
- Enterobacteria phage t4 [10]
- Thermus thermophilus [10]
- Dna molecule [10]
- Rotavirus a [10]
- Caenorhabditis elegans [10]
- Canis lupus [10]
- (no species) [9]
- Foot-and-mouth disease virus [9]
- Flavobacterium johnsoniae [9]
- Escherichia coli [9]
- Sus scrofa [9]
- Flavobacterium johnsoniae [9]
- Pseudomonas phage phi6 [8]
- Trypanosoma brucei [8]
- Influenza c virus [7]
- Streptococcus pyogenes [7]
- Thermoplasma acidophilum [7]
- Nitrosopumilus maritimus [7]
- Dictyostelium discoideum [7]
- Tetrahymena thermophila [7]
- Xenopus laevis [7]
- Canis lupus [7]
- Toxoplasma gondii [6]
- Pseudomonas virus prd1 [5]
- Dengue virus [5]
- Cricket paralysis virus [5]
- Orthoebolavirus zairense [5]
- Hantaan orthohantavirus [5]
- Haloferax volcanii [5]
- Bordetella pertussis [5]
- Klebsiella pneumoniae [5]
- Aedes albopictus [5]
- Escherichia coli [5]
- African swine fever virus [4]
- Influenza c virus [4]
- Gemmatimonas phototrophica [4]
- Bacillus thuringiensis [4]
- Corynebacterium glutamicum [4]
- Mycobacterium tuberculosis [4]
- Human respiratory syncytial virus [4]
- Candidatus heimdallarchaeota archaeon [4]
- Nitratifractor salsuginis [4]
- Pseudomonas aeruginosa [4]
- Lentivirus humimdef1 [4]
- Komagataella phaffii [4]
- Komagataella pastoris [4]
- Chaetomium thermophilum [4]
- Mycobacterium tuberculosis [4]
- Escherichia coli [4]
- Adeno-associated dependoparvovirus a [4]
- Salmonella enterica [4]
- Pan troglodytes [4]
- Felis catus [4]
- Equus caballus [4]
- Escherichia virus t7 [3]
- Mammalian orthoreovirus [3]
- Enterovirus c [3]
- Severe acute respiratory syndrome coronavirus [3]
- Trypanosoma brucei [3]
- Pseudomonas aeruginosa [3]
- Visna-maedi virus [3]
- Bacteroides thetaiotaomicron [3]
- Sulfolobus acidocaldarius [3]
- Thermus thermophilus [3]
EM Method
- Single-particle [2101]
- Helical reconstruction [355]
- Subtomogram averaging [164]
- Tomography [82]
- Electron Crystallography [29]
Resolution
- < 2Å [37]
- ≥ 2Å and < 3Å [600]
- ≥ 3Å and < 4Å [1100]
- ≥ 4Å and < 5Å [309]
- ≥ 5Å and < 6Å [60]
- ≥ 6Å and < 8Å [139]
- ≥ 8Å and < 12Å [152]
- ≥ 12Å and < 16Å [61]
- ≥ 16Å and < 20Å [75]
- ≥ 20Å and < 30Å [76]
- ≥ 30Å [34]
Model molecular weight
- 0-50 kDa [43]
- 50-100 kDa [113]
- 100-250 kDa [394]
- 250-500 kDa [483]
- 500-1000 kDa [233]
- 1-2 MDa [176]
- 2-5 MDa [87]
- 5-10 MDa [42]
- > 10 MDa [45]
Release Date
- 2026 [468]
- 2025 [640]
- 2024 [506]
- 2023 [640]
- 2022 [450]
- 2021 [570]
- 2020 [304]
- 2019 [160]
- 2018 [113]
- 2017 [76]
- 2016 [88]
- 2015 [68]
- 2014 [36]
- 2013 [11]
- 2012 [6]
- 2011 [12]
- 2010 [8]
- 2009 [11]
- 2008 [2]
- 2007 [21]
- 2006 [7]
- 2005 [5]
- 2004 [6]
- 2003 [2]
- 2002 [4]
Author by name
- Scheres SHW [305]
- Kotecha A [246]
- Murzin AG [232]
- Goedert M [224]
- Hirst J [175]
- Spikes TE [157]
- Walker JE [144]
- Lovestam S [143]
- Montgomery MG [143]
- Mclaughlin SH [130]
- Ghetti B [126]
- Briggs JAG [122]
- Zhang Z [122]
- Carter AP [114]
- Bridges HR [108]
- Aricescu AR [106]
- Yin Z [102]
- Chung I [97]
- Stuart DI [94]
- Ramakrishnan V [92]
- Greber BJ [90]
- Garringer HJ [88]
- Malinauskas T [85]
- Feng J [84]
- Kimanius D [84]
- Barford D [83]
- Vidal R [82]
- Blaza JN [81]
- Naydenova K [80]
- Lowe J [76]
- Cushing VI [75]
- Ryskeldi-falcon B [73]
- Hasegawa M [72]
- Yeeles JTP [72]
- Nagai K [71]
- Ranson NA [71]
- Freund SMV [70]
- Yang J [69]
- Koh AF [68]
- Pollak MN [68]
- Fry EE [66]
- Wagstaff JL [65]
- Williams RL [65]
- Ali S [64]
- Duyvesteyn HME [64]
- Savva CG [64]
- Shi Y [64]
- Hardwick SW [63]
- Li D [62]
- Bahl AK [61]
- Barbazanges M [61]
- Barrett AGM [61]
- Bondke A [61]
- Jurgaityte K [61]
- Kroll SHB [61]
- Petri J [61]
- Ren J [61]
- Scheiper B [61]
- Greger IH [60]
- Russo CJ [59]
- Zhao Y [59]
- Bharat TAM [57]
- Jones ML [55]
- Lashley T [55]
- Zhou D [55]
- Newell KL [54]
- Rappsilber J [54]
- Zhang X [54]
- Qu K [53]
- Chirgadze DY [52]
- Lea SM [52]
- Potter CS [52]
- Shi J [52]
- Bourguet M [51]
- Carragher B [51]
- Baris Y [50]
- Grimes JM [50]
- Wilkinson ME [50]
- Yang Y [50]
- Arseni D [49]
- Carrique L [48]
- Ohashi Y [48]
- Zhang W [48]
- Deme JC [47]
- Wright JJ [47]
- Yoshida M [47]
- Mihaylov DB [45]
- Dessus AN [44]
- Noble AJ [44]
- Screaton GR [44]
- Murayama S [43]
- Passmore LA [43]
- Rosenthal PB [43]
- Tetter S [42]
- Zhang S [42]
- Boulanger J [41]
- Falcon B [41]
- Fodor E [41]
- Grba DN [41]
- Ho H [41]
Author by ORCID
- Kotecha A [220]
- Scheres SHW [210]
- Goedert M [146]
- Hirst J [142]
- Spikes TE [123]
- Mclaughlin SH [121]
- Walker JE [110]
- Montgomery MG [109]
- Briggs JAG [108]
- Carter AP [101]
- Yin Z [91]
- Bridges HR [90]
- Greber BJ [90]
- Aricescu AR [90]
- Ramakrishnan V [83]
- Feng J [83]
- Chung I [82]
- Barford D [75]
- Cushing VI [75]
- Blaza JN [71]
- Malinauskas T [71]
- Yeeles JTP [69]
- Freund SMV [67]
- Garringer HJ [66]
- Pollak MN [66]
- Ali S [64]
- Lowe J [63]
- Koh AF [62]
- Li D [62]
- Barbazanges M [61]
- Barrett AGM [61]
- Jurgaityte K [61]
- Greger IH [60]
- Ryskeldi-falcon B [59]
- Vidal R [58]
- Jones ML [55]
- Ghetti B [54]
- Zhou D [54]
- Zhang Z [54]
- Ranson NA [51]
- Bharat TAM [49]
- Yang J [49]
- Baris Y [49]
- Carrique L [48]
- Mihaylov DB [45]
- Hardwick SW [44]
- Ren J [44]
- Duyvesteyn HME [42]
- Russo CJ [41]
- Lea SM [40]
- Williams RL [39]
- Radford SE [39]
- Calabrese AN [39]
- Keown JR [38]
- Rosenthal PB [37]
- Zhang W [36]
- Fodor E [36]
- Ho H [35]
- Yang Y [35]
- Rappsilber J [34]
- Pardon E [34]
- Steyaert J [34]
- Xiong X [34]
- Hamdan SM [33]
- Alhudhali L [33]
- Arseni D [33]
- Hegde RS [33]
- Deme JC [33]
- Galej WP [33]
- Wright JJ [33]
- Fica SM [33]
- Tehseen M [33]
- Clark AR [33]
- Shahid T [33]
- De Biasio A [33]
- Danazumi AU [33]
- Chirgadze DY [32]
- Brown A [32]
- Stuart DI [32]
- Yamashita K [32]
- Ke Z [32]
- Fan H [32]
- Huang KA [31]
- Foglizzo M [31]
- Raunser S [31]
- Nguyen THD [31]
- Wang Z [31]
- Mentzer AJ [31]
- Van Knippenberg B [31]
- Temperton N [31]
- Jenkyn-bedford M [31]
- Grange M [31]
- Grba DN [31]
- Gautel M [31]
- Lok SM [31]
- Scheres SH [30]
- Ohashi Y [30]
- Qu K [30]
- Llacer JL [29]
- Spokaite S [29]
Journal
- NAT COMMUN [595]
- NATURE [540]
- SCIENCE [339]
- BIORXIV [312]
- TO BE PUBLISHED [295]
- PNAS [287]
- ELIFE [241]
- NAT STRUCT MOL BIOL [202]
- SCI ADV [171]
- CELL [133]
- MOL CELL [122]
- EMBO J [76]
- STRUCTURE [72]
- NAT MICROBIOL [46]
- CELL REP [41]
- COMMUN BIOL [37]
- PLOS PATHOG [35]
- J MOL BIOL [33]
- ACTA NEUROPATHOL [30]
- J STRUCT BIOL [29]
- NUCLEIC ACIDS RES [28]
- J CELL BIOL [26]
- NAT METHODS [26]
- ACTA CRYSTALLOGR D STRUCT BIOL [25]
- EMBO REP [25]
- DEV CELL [24]
- J BIOL CHEM [22]
- CELL HOST MICROBE [21]
- STRUCTURE (LONDON, ENGLAND : 1993) [19]
- J MED CHEM [17]
- J VIROL [17]
- COMMUNICATIONS BIOLOGY [16]
- PLOS BIOL [14]
- COMMUN. BIOL. [13]
- FEBS OPEN BIO [11]
- IUCRJ [11]
- J CELL SCI [11]
- CELL REP METHODS [10]
- CELL REPORTS METHODS [10]
- NAT CHEM BIOL [10]
- NAT CELL BIOL [9]
- NAT PROTOC [9]
- SCI REP [9]
- PLOS ONE [8]
- CURR BIOL [7]
- J STRUCT BIOL X [7]
- JOURNAL OF MEDICINAL CHEMISTRY [7]
- FEBS LETT [6]
- MBIO [6]
- NAT NEUROSCI [6]
- VIRUSES [6]
- BIOCHEM J [5]
- GENOME BIOL EVOL [5]
- J AM CHEM SOC [5]
- JOURNAL OF THE AMERICAN CHEMICAL SOCIETY [5]
- BIOCHIM BIOPHYS ACTA BIOENERG [4]
- BLOOD [4]
- CELL RES [4]
- ISCIENCE [4]
- J MICROSC [4]
- NEURON [4]
- NPJ VACCINES [4]
- STRUCT. [4]
- AUTOPHAGY [3]
- BIOPHYS REV [3]
- CELL REP MED [3]
- FRONT MOL BIOSCI [3]
- FRONTIERS [3]
- INT J MOL SCI [3]
- INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES [3]
- J BACTERIOL [3]
- MICROSCOPY [3]
- MOL BIOL CELL [3]
- NAT COMM [3]
- PROTEIN SCI [3]
- RES SQ [3]
- ACTA D [2]
- ADV MATER [2]
- ADV SCI [2]
- ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) [2]
- ANGEW CHEM INT ED ENGL [2]
- ARXIV [2]
- BIOCHEMISTRY [2]
- BMC METHODS [2]
- CELL DISCOV [2]
- COMMS.BIOL. [2]
- EMBO REPORTS [2]
- FRONT MICROBIOL [2]
- FRONTIERS IN MICROBIOLOGY [2]
- J GEN VIROL [2]
- J MUSCLE RES CELL MOTIL [2]
- LIFE SCI ALLIANCE [2]
- MICROSC MICROANAL [2]
- MSPHERE [2]
- NAT. COMM. [2]
- NUCLEIC ACIDS RESEARCH [2]
- OPEN BIOL [2]
- PNAS NEXUS [2]
- RESEARCH SQUARE [2]
- SCI SIGNAL [2]
Software
- RELION [1344]
- CRYOSPARC [556]
- CTFFIND [304]
- GCTF [96]
- MRC [47]
- WARP [47]
- IMOD [36]
- DYNAMO [23]
- NOVACTF [23]
- UCSF CHIMERAX [21]
- ETOMO [19]
- M [17]
- UCSF CHIMERA [17]
- CRYOLO [16]
- CTFFIND3, RELION [15]
- CHIMERA [14]
- ISOLDE [12]
- MATLAB [12]
- SIMPLE [11]
- AV3 [10]
- MRC, IMAGIC, SPIDER [9]
- SUBTOM [9]
- TOM [9]
- COOT [8]
- PHENIX [8]
- TOM TOOLBOX [8]
- CTFPHASEFLIP [7]
- MPSA [7]
- PEET [7]
- SITUS [7]
- CHIMERA, REFMAC [5]
- EMAN [5]
- EMAN2 [5]
- SPIDER [5]
- BSOFT [4]
- CTFFIND4, RELION [4]
- EMBL-ICOS, MRC [4]
- IMAGIC [4]
- IMAGIC SPIDER MRC [4]
- CHIMERA, COOT, REFMAC [3]
- CISTEM [3]
- EMCLARITY [3]
- IMOD, TOMO3D [3]
- RELION, CTFFIND3, EMAN2 [3]
- SPIDER, IMAGIC-5, MRC [3]
- 2DX, AND, MRC [2]
- CHIMERA, COOT [2]
- CNS [2]
- CTFFIND, EMAN2, SPRING [2]
- DIREX [2]
- EM3DR2, PFT2, CTFMIX [2]
- FREALIGN [2]
- JSPR [2]
- MRC IMAGE PROCESSING PACKAGE [2]
- MRC, AND, OWN, PROGRAMS [2]
- MRC, EMAN [2]
- MRC, IMAGIC, RELION, 1.3 [2]
- MRC, IMOD, IVE [2]
- MRC, SPIDER, FREALIGN [2]
- O [2]
- PYTOM [2]
- SCIPION [2]
- SPIDER, IMAGIC [2]
- SPIDER, IMAGIC, EMAN [2]
- SPIDER, MRC, EMAN, IMAGIC4D [2]
- URO [2]
- UROX AND CHIMERA [2]
- X-PLOR AND EMFIT M. ROSSMANN CHENG, R., KUHN, R., OLSON, N., ROSSMANN, M., AND BAKER, T. 1995 . NUCLEOCAPSID AND GLYCOPROTEIN ORGANIZATION IN AN ENVELOPED VIRUS. CELL 80, 621-630. [2]
- 3DMOD [1]
- BUSTER-TNT [1]
- CHIMERA AND COOT [1]
- CHIMERA, COOT, AND REFMAC [1]
- CHIMERA, SITUS [1]
- CHIMERA,SITUS [1]
- COLORES [1]
- EMFIT [1]
- EMFIT M. ROSSMANN CHENG, R., KUHN, R., OLSON, N., ROSSMANN, M., AND BAKER, T. 1995 . NUCLEOCAPSID AND GLYCOPROTEIN ORGANIZATION IN AN ENVELOPED VIRUS. CELL 80, 621-630. [1]
- FOLDHUNTER [1]
- FOLDHUNTER AND HOMEMADE SOFTWARE [1]
- IMAGIC, FREALIGN, ROTAN [1]
- IMAGIC, SPIDER [1]
- IMOD, TOMO3D, RELION [1]
- IN-HOUSE SOFTWARE BASED ON MRC SYSTEM [1]
- MRC AND HOME-MADE PROGRAMS [1]
- MRC AND HOME-MADE SOFTWARE [1]
- MRC AND SPIDER [1]
- MRC IMAGE2000 AND IMAGIC [1]
- MRC, CCP4, HOMEMADE [1]
- MRC, CTFFIND3, FREALIGN [1]
- MRC, EMAN, SPIDER [1]
- MRC, EMIP, CHIMERA [1]
- MRC, IMAGIC, FREALIGN [1]
- MRC, RELION, 1.3 [1]
- MRC, SUPRIM, PHOELIX, OTHER [1]
- MRC,IMRS [1]
- MRC,SPIDER,CORAN [1]
- NAMD [1]
- PFT3DR2, MRC [1]
- PHOELIX AND MRC [1]
- PROJALIGN [1]
Microscope
- FEI TITAN KRIOS [1694]
- TFS KRIOS [660]
- FEI POLARA 300 [97]
- TFS GLACIOS [73]
- FEI TECNAI F20 [40]
- FEI TALOS ARCTICA [28]
- JEOL KYOTO-3000SFF [17]
- FEI TITAN [14]
- FEI/PHILIPS CM120T [13]
- FEI/PHILIPS CM200FEG [13]
- JEOL CRYO ARM 300 [12]
- FEI TECNAI SPIRIT [11]
- JEOL 1400/HR YPS FEG [11]
- FEI TECNAI 12 [10]
- FEI TECNAI F30 [7]
- JEOL 1400 [5]
- FEI/PHILIPS CM200FEG/ST [4]
- JEOL 1200EXII [3]
- JEOL 3000SFF [3]
- FEI TECNAI 10 [2]
- JEOL 2100F [2]
- JEOL 2200FS [2]
- JEOL 3200FS [2]
- JEOL 4000EX [2]
- OTHER [2]
- FEI TECNAI 20 [1]
- FEI/PHILIPS CM200T [1]
- FEI/PHILIPS CM300FEG/T [1]
- JEOL 2011 [1]
- JEOL 4000 [1]
- TFS TALOS L120C [1]
Electron Source
- FIELD EMISSION GUN [2670]
- LAB6 [39]
- TUNGSTEN HAIRPIN [22]
- OTHER [1]
Film or detector model
- GATAN K3 BIOQUANTUM 6K X 4K [542]
- GATAN K3 6K X 4K [484]
- FEI FALCON IV 4K X 4K [393]
- GATAN K2 SUMMIT 4K X 4K [378]
- FEI FALCON III 4K X 4K [216]
- GATAN K2 QUANTUM 4K X 4K [203]
- TFS FALCON 4I 4K X 4K [197]
- FEI FALCON II 4K X 4K [117]
- KODAK SO-163 FILM [89]
- OTHER [32]
- GATAN K2 BASE 4K X 4K [14]
- DECTRIS SINGLA 1K X 1K [11]
- GATAN ULTRASCAN 4000 4K X 4K [9]
- DIRECT ELECTRON DE-64 8K X 8K [8]
- FEI EAGLE 2K X 2K [7]
- FEI EAGLE 4K X 4K [7]
- GATAN K3 BIOCONTINUUM 6K X 4K [6]
- GATAN ORIUS SC1000 4K X 2.7K [5]
- DIRECT ELECTRON DE-20 5K X 3K [4]
- FEI CETA 4K X 4K [4]
- GATAN K2 4K X 4K [4]
- TVIPS TEMCAM-F415 4K X 4K [4]
- TVIPS TEMCAM-F816 8K X 8K [3]
- FEI FALCON I 4K X 4K [2]
- GENERIC CCD [2]
- DIRECT ELECTRON APOLLO 4K X 4K [1]
- GATAN ULTRASCAN 1000 2K X 2K [1]
- GENERIC FILM [1]
- GENERIC GATAN [1]
- GENERIC GATAN 4K X 4K [1]
EMPIAR Experiment type
- EMDB [1392]
- EXCEPTION [20]
- FIB-SEM [19]
- SSET [15]
- SBF-SEM [13]
- CLXM [10]
- SXT [10]
- CLEM [3]
- IHM [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [834]
- MICROGRAPHS - SINGLE FRAME [527]
- TILT SERIES [281]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [149]
- RECONSTRUCTED VOLUMES [121]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [81]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [32]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [22]
- CLASS AVERAGES [12]
- SUBTOMOGRAMS [7]
- PARTICLE PICKING [3]
- STITCHED MAPS [3]
- ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
- DIFFRACTION IMAGES [1]
- SOFT X-RAY TOMOGRAMS [1]
External links
- PDB [2695]
- UniProt [1746]
- PDBe-Kb [1673]
- AlphaFold DB [1637]
- EMDB [1389]
- InterPro [1360]
- Gene Ontology [1340]
- Pfam [1292]
- ChEBI [854]
- ChEMBL [805]
- DrugBank [702]
- Complex Portal [592]
- EMPIAR [473]
- SCOP2 [45]
- CATH [20]
- BioImage Archive [13]
