Electron Microscopy Data Bank

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Current Database

Current status

Sample type

Organism

Homo sapiens [238]
Synthetic construct [79]
Mus musculus [50]
Bos taurus [47]
Escherichia coli [41]
Lama glama [36]
Rattus norvegicus [33]
Saccharomyces cerevisiae [19]
Oryctolagus cuniculus [10]
Caenorhabditis elegans [7]
Gammaproteobacteria bacterium [6]
Escherichia coli [5]
Thermus thermophilus [4]
Arabidopsis thaliana [4]
Bacteroides fragilis [4]
Canis lupus [4]
(no species) [3]
Rattus rattus [3]
Kluyveromyces lactis [3]
Thermococcus onnurineus [3]
Thermococcus onnurineus [3]
Oplophorus gracilirostris [3]
Escherichia coli [2]
Saccharomyces cerevisiae [2]
Vibrio alginolyticus [2]
Escherichia coli [2]
Spodoptera frugiperda [2]
(no species) [2]
Lactococcus lactis [1]
Bacillus subtilis [1]
Pseudomonas aeruginosa [1]
Mycolicibacterium smegmatis [1]
Thermus thermophilus [1]
Myxococcus fulvus [1]
Influenza a virus [1]
(no species) [1]
Camelus bactrianus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Xu HE [63]
Jiang Y [52]
Zhang Y [45]
Zhang H [35]
Wang Y [34]
Cheng X [29]
Mao C [29]
Roth BL [29]
Xu Z [28]
Zhang C [28]
Shen DD [26]
Xu P [26]
Li H [25]
Jiang H [23]
He X [22]
Shao Z [22]
Yang D [22]
Zhuang Y [22]
Li X [21]
Wang MW [21]
Zhou XE [21]
Guo J [19]
Melcher K [19]
Wang X [19]
Xiao P [19]
Chen H [18]
Chen Z [18]
Huang S [18]
Krumm BE [18]
Diberto JF [17]
Fay JF [17]
Hu W [17]
Jain MK [17]
Jin J [17]
Kim K [17]
Sun JP [17]
Chen S [16]
Liu X [16]
Yang S [16]
Yu X [16]
Zhang X [16]
Chen X [15]
Liu J [15]
Yan W [15]
Zhang M [15]
Gumpper RH [14]
Kaniskan HU [14]
Kapolka NJ [14]
Liu H [14]
Nichols DE [14]
Sun N [14]
Sun R [14]
Wu K [14]
Yuan Q [14]
Yusupov M [14]
Yusupova G [14]
Zhou Q [14]
Wacker D [13]
Warren AL [13]
Yang J [13]
Zilberg G [13]
Cao C [12]
Dai A [12]
Myasnikov A [12]
Shen Q [12]
Wang C [12]
Wang Q [12]
Xu Y [12]
Yang CC [12]
Yang L [12]
Zhong YN [12]
Chen Y [11]
Duan J [11]
He Y [11]
Hu Z [11]
Mielke T [11]
Spahn CMT [11]
Sun J [11]
Wu C [11]
Du Y [10]
Gloriam DE [10]
Harpsoe K [10]
Liu W [10]
Simon IA [10]
Teng X [10]
Zhang L [10]
Zhang S [10]
Zheng S [10]
Feng W [9]
Huang XP [9]
Inoue A [9]
Jenner L [9]
Milicevic N [9]
Shoichet BK [9]
Wang H [9]
Wang J [9]
Wen X [9]
Yamashita K [9]
Yang DH [9]
Yin W [9]

Author by ORCID

Xu HE [49]
Roth BL [26]
Zhang Y [23]
Zhuang Y [20]
Melcher K [19]
Xiao P [19]
Mao C [18]
Krumm BE [18]
Jiang Y [17]
Jin J [17]
Fay JF [17]
Cheng X [17]
Shao Z [16]
He X [16]
Yang D [16]
Xu P [15]
Kaniskan HU [14]
Jain MK [14]
Jiang H [14]
Gumpper RH [14]
Yusupov M [13]
Wang MW [13]
Yusupova G [13]
Warren AL [11]
Wacker D [11]
Shen Q [10]
Shen DD [10]
Gloriam DE [10]
Teng X [10]
Chen H [10]
Zheng S [10]
Harpsoe K [10]
Simon IA [10]
Yamashita K [9]
Milicevic N [9]
Shoichet BK [9]
Yin W [9]
Myasnikov A [9]
Jenner L [9]
Xu Y [8]
Yan W [8]
Zhang X [8]
Zhang H [8]
Sun JP [8]
Yang S [7]
Yang L [7]
Ranjbar M [7]
Luan X [7]
Zhang S [7]
Wang Y [7]
Gong W [7]
Plisson-chastang C [7]
Su D [7]
Gati C [7]
Wootten D [7]
Chen H [7]
Astier A [7]
Shi Y [7]
Liu G [7]
Zhang Z [7]
Li X [7]
Huang S [6]
Cabrerizo Granados D [6]
Marcoux J [6]
Lebaron S [6]
Catez F [6]
Vereecke S [6]
Capron C [6]
Verbruggen S [6]
Basbaum AI [6]
Nishimasu H [6]
Xia A [6]
Wang X [6]
Loerke J [6]
Leclercq M [6]
Hiraizumi M [6]
Rapino F [6]
Ramakrishnan V [6]
Xu Z [6]
Chapat C [6]
Zhao J [6]
Zilberg G [6]
De Keersmaecker K [6]
Menschaert G [6]
Plassart L [6]
Wu C [6]
Close P [6]
Osawa T [6]
Marcel V [6]
Durand S [6]
Yang J [6]
Inoue A [6]
Kato K [6]
Caruso M [6]
Cheng X [6]
Pepe D [6]
Hu Z [6]
Ishikawa J [6]
Santo PE [6]
Paraqindes H [6]

Journal

Software

Microscope

Electron Source

Film or detector model

External links

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EMD-69218

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Cryo-EM structure of the cebranopadol-mu opioid receptor-Gi complex

CryoEM

Release date: July 1, 2026
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 23so

Q-score: 0.454
Similar entry percentile: 29%

Lai Y, Huang X, Shen S, Hu W, Xu HE, Wang Y

To Be Published

EMD-66346

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Raw data

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the pre-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9wxh

Q-score: 0.61
Similar entry percentile: 86%

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74422-0 Pubmed: 42342668 ]

EMD-66347

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Raw data

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the post-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9wxi

Q-score: 0.5
Similar entry percentile: 44%

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74422-0 Pubmed: 42342668 ]

EMD-66348

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Raw data

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a non-cognate target RNA in the pre-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9wxj

Q-score: 0.59
Similar entry percentile: 83%

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74422-0 Pubmed: 42342668 ]

EMD-69899

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Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the pre-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.7 Å
EM Method: Single-particle

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74422-0 Pubmed: 42342668 ]

EMD-69900

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Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the post-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.9 Å
EM Method: Single-particle

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74422-0 Pubmed: 42342668 ]

EMD-69901

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Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a non-cognate target RNA in the pre-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.8 Å
EM Method: Single-particle

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74422-0 Pubmed: 42342668 ]

EMD-80237

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A complex of PTH1R/Gs bound to a PTHrP analogue with five beta-amino acids

CryoEM

Release date: June 3, 2026
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 25nv

Q-score: 0.438
Similar entry percentile: 35%

Kim TW, Gerrard EJ, Shin J, Gardella TJ, Wootten D, Sexton PM, Cary BP, Gellman SH

J Am Chem Soc (2026) 148 pp. 22045-22061 [ Pubmed: 42159093 DOI: doi:10.1021/jacs.6c02192 ]

EMD-80238

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A complex of PTH1R/Gs bound to a PTHrP analogue with three beta-amino acids

CryoEM

Release date: June 3, 2026
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 25nx

Q-score: 0.501
Similar entry percentile: 46%

Kim TW, Gerrard EJ, Shin J, Gardella TJ, Wootten D, Sexton PM, Cary BP, Gellman SH

J Am Chem Soc (2026) 148 pp. 22045-22061 [ Pubmed: 42159093 DOI: doi:10.1021/jacs.6c02192 ]

EMD-53473

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Mouse Ribosome Classical Pre translocation state

CryoEM

Release date: May 27, 2026
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 9qzp

Q-score: 0.147
Similar entry percentile: 1%

Astier A, Caruso M, Vereecke S, Santo PE, Capron C, Froment C, Rinaldi D, Cabrerizo Granados D, Leclercq M, Royaert J, Verbeeck J, Pasau N, Plassart L, Pepe D, Verbruggen S, Paraqindes H, Lebaron S, Marcel V, Durand S, Chapat C, Menschaert G, Close P, Rapino F, Catez F, Marcoux J, Plisson-Chastang C, De Keersmaecker K

Hemasphere (2026) 10 pp. e70377-e70377 [ Pubmed: 42255948 DOI: doi:10.1002/hem3.70377 ]

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Showing 1 - 10 of 326. Page 1 of 33

Display:

Statistics

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [238]
Synthetic construct [79]
Mus musculus [50]
Bos taurus [47]
Escherichia coli [41]
Lama glama [36]
Rattus norvegicus [33]
Saccharomyces cerevisiae [19]
Oryctolagus cuniculus [10]
Caenorhabditis elegans [7]
Gammaproteobacteria bacterium [6]
Escherichia coli [5]
Thermus thermophilus [4]
Arabidopsis thaliana [4]
Bacteroides fragilis [4]
Canis lupus [4]
(no species) [3]
Rattus rattus [3]
Kluyveromyces lactis [3]
Thermococcus onnurineus [3]
Thermococcus onnurineus [3]
Oplophorus gracilirostris [3]
Escherichia coli [2]
Saccharomyces cerevisiae [2]
Vibrio alginolyticus [2]
Escherichia coli [2]
Spodoptera frugiperda [2]
(no species) [2]
Lactococcus lactis [1]
Bacillus subtilis [1]
Pseudomonas aeruginosa [1]
Mycolicibacterium smegmatis [1]
Thermus thermophilus [1]
Myxococcus fulvus [1]
Influenza a virus [1]
(no species) [1]
Camelus bactrianus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Xu HE [63]
Jiang Y [52]
Zhang Y [45]
Zhang H [35]
Wang Y [34]
Cheng X [29]
Mao C [29]
Roth BL [29]
Xu Z [28]
Zhang C [28]
Shen DD [26]
Xu P [26]
Li H [25]
Jiang H [23]
He X [22]
Shao Z [22]
Yang D [22]
Zhuang Y [22]
Li X [21]
Wang MW [21]
Zhou XE [21]
Guo J [19]
Melcher K [19]
Wang X [19]
Xiao P [19]
Chen H [18]
Chen Z [18]
Huang S [18]
Krumm BE [18]
Diberto JF [17]
Fay JF [17]
Hu W [17]
Jain MK [17]
Jin J [17]
Kim K [17]
Sun JP [17]
Chen S [16]
Liu X [16]
Yang S [16]
Yu X [16]
Zhang X [16]
Chen X [15]
Liu J [15]
Yan W [15]
Zhang M [15]
Gumpper RH [14]
Kaniskan HU [14]
Kapolka NJ [14]
Liu H [14]
Nichols DE [14]
Sun N [14]
Sun R [14]
Wu K [14]
Yuan Q [14]
Yusupov M [14]
Yusupova G [14]
Zhou Q [14]
Wacker D [13]
Warren AL [13]
Yang J [13]
Zilberg G [13]
Cao C [12]
Dai A [12]
Myasnikov A [12]
Shen Q [12]
Wang C [12]
Wang Q [12]
Xu Y [12]
Yang CC [12]
Yang L [12]
Zhong YN [12]
Chen Y [11]
Duan J [11]
He Y [11]
Hu Z [11]
Mielke T [11]
Spahn CMT [11]
Sun J [11]
Wu C [11]
Du Y [10]
Gloriam DE [10]
Harpsoe K [10]
Liu W [10]
Simon IA [10]
Teng X [10]
Zhang L [10]
Zhang S [10]
Zheng S [10]
Feng W [9]
Huang XP [9]
Inoue A [9]
Jenner L [9]
Milicevic N [9]
Shoichet BK [9]
Wang H [9]
Wang J [9]
Wen X [9]
Yamashita K [9]
Yang DH [9]
Yin W [9]

Author by ORCID

Xu HE [49]
Roth BL [26]
Zhang Y [23]
Zhuang Y [20]
Melcher K [19]
Xiao P [19]
Mao C [18]
Krumm BE [18]
Jiang Y [17]
Jin J [17]
Fay JF [17]
Cheng X [17]
Shao Z [16]
He X [16]
Yang D [16]
Xu P [15]
Kaniskan HU [14]
Jain MK [14]
Jiang H [14]
Gumpper RH [14]
Yusupov M [13]
Wang MW [13]
Yusupova G [13]
Warren AL [11]
Wacker D [11]
Shen Q [10]
Shen DD [10]
Gloriam DE [10]
Teng X [10]
Chen H [10]
Zheng S [10]
Harpsoe K [10]
Simon IA [10]
Yamashita K [9]
Milicevic N [9]
Shoichet BK [9]
Yin W [9]
Myasnikov A [9]
Jenner L [9]
Xu Y [8]
Yan W [8]
Zhang X [8]
Zhang H [8]
Sun JP [8]
Yang S [7]
Yang L [7]
Ranjbar M [7]
Luan X [7]
Zhang S [7]
Wang Y [7]
Gong W [7]
Plisson-chastang C [7]
Su D [7]
Gati C [7]
Wootten D [7]
Chen H [7]
Astier A [7]
Shi Y [7]
Liu G [7]
Zhang Z [7]
Li X [7]
Huang S [6]
Cabrerizo Granados D [6]
Marcoux J [6]
Lebaron S [6]
Catez F [6]
Vereecke S [6]
Capron C [6]
Verbruggen S [6]
Basbaum AI [6]
Nishimasu H [6]
Xia A [6]
Wang X [6]
Loerke J [6]
Leclercq M [6]
Hiraizumi M [6]
Rapino F [6]
Ramakrishnan V [6]
Xu Z [6]
Chapat C [6]
Zhao J [6]
Zilberg G [6]
De Keersmaecker K [6]
Menschaert G [6]
Plassart L [6]
Wu C [6]
Close P [6]
Osawa T [6]
Marcel V [6]
Durand S [6]
Yang J [6]
Inoue A [6]
Kato K [6]
Caruso M [6]
Cheng X [6]
Pepe D [6]
Hu Z [6]
Ishikawa J [6]
Santo PE [6]
Paraqindes H [6]

Journal

Software

Microscope

Electron Source

Film or detector model

External links