Electron Microscopy Data Bank

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Organism

Homo sapiens [231]
Synthetic construct [76]
Mus musculus [48]
Bos taurus [46]
Escherichia coli [41]
Rattus norvegicus [32]
Lama glama [32]
Saccharomyces cerevisiae [19]
Oryctolagus cuniculus [10]
Caenorhabditis elegans [7]
Gammaproteobacteria bacterium [6]
Escherichia coli [5]
Thermus thermophilus [4]
Arabidopsis thaliana [4]
Bacteroides fragilis [4]
Canis lupus [4]
Cricetulus griseus [3]
(no species) [3]
Rattus rattus [3]
Kluyveromyces lactis [3]
Thermococcus onnurineus [3]
Thermococcus onnurineus [3]
Oplophorus gracilirostris [3]
Escherichia coli [2]
Saccharomyces cerevisiae [2]
Vibrio alginolyticus [2]
Escherichia coli [2]
(no species) [2]
Lactococcus lactis [1]
Bacillus subtilis [1]
Pseudomonas aeruginosa [1]
Mycolicibacterium smegmatis [1]
Thermus thermophilus [1]
Myxococcus fulvus [1]
Influenza a virus [1]
Spodoptera frugiperda [1]
(no species) [1]
Camelus bactrianus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Xu HE [58]
Jiang Y [48]
Zhang Y [41]
Wang Y [33]
Zhang H [31]
Cheng X [29]
Roth BL [29]
Xu Z [28]
Zhang C [27]
Mao C [25]
Jiang H [23]
He X [22]
Shao Z [22]
Shen DD [22]
Xu P [22]
Yang D [22]
Zhuang Y [22]
Li H [21]
Li X [21]
Wang MW [21]
Zhou XE [21]
Guo J [19]
Melcher K [19]
Wang X [19]
Xiao P [19]
Chen H [18]
Chen Z [18]
Krumm BE [18]
Diberto JF [17]
Fay JF [17]
Jain MK [17]
Jin J [17]
Kim K [17]
Sun JP [17]
Chen S [16]
Hu W [16]
Liu X [16]
Yang S [16]
Chen X [15]
Liu J [15]
Yan W [15]
Zhang M [15]
Zhang X [15]
Gumpper RH [14]
Huang S [14]
Kaniskan HU [14]
Kapolka NJ [14]
Liu H [14]
Nichols DE [14]
Sun N [14]
Sun R [14]
Wu K [14]
Yuan Q [14]
Yusupov M [14]
Yusupova G [14]
Zhou Q [14]
Wacker D [13]
Warren AL [13]
Yang J [13]
Zilberg G [13]
Cao C [12]
Dai A [12]
Myasnikov A [12]
Shen Q [12]
Wang C [12]
Wang Q [12]
Xu Y [12]
Yang CC [12]
Yang L [12]
Yu X [12]
Zhong YN [12]
Chen Y [11]
Duan J [11]
He Y [11]
Hu Z [11]
Mielke T [11]
Spahn CMT [11]
Sun J [11]
Wu C [11]
Du Y [10]
Liu W [10]
Teng X [10]
Zhang L [10]
Zhang S [10]
Zheng S [10]
Feng W [9]
Huang XP [9]
Inoue A [9]
Jenner L [9]
Milicevic N [9]
Shoichet BK [9]
Wang H [9]
Wang J [9]
Wen X [9]
Yamashita K [9]
Yang DH [9]
Yin W [9]
Yu J [9]
Zhang N [9]
Zhou Y [9]

Author by ORCID

Xu HE [44]
Roth BL [23]
Zhang Y [23]
Zhuang Y [20]
Melcher K [19]
Jiang Y [17]
Cheng X [17]
Mao C [16]
Krumm BE [15]
He X [15]
Xu P [15]
Kaniskan HU [14]
Shao Z [14]
Jain MK [14]
Jin J [14]
Xiao P [14]
Jiang H [14]
Gumpper RH [14]
Fay JF [14]
Warren AL [11]
Yang D [11]
Wacker D [11]
Yusupov M [9]
Yusupova G [9]
Myasnikov A [9]
Jenner L [9]
Wang MW [8]
Shen Q [8]
Xu Y [8]
Shen DD [8]
Yan W [8]
Teng X [8]
Zheng S [8]
Zhang H [8]
Sun JP [8]
Yang S [7]
Yang L [7]
Ranjbar M [7]
Luan X [7]
Zhang S [7]
Zhang X [7]
Gong W [7]
Gati C [7]
Liu G [7]
Zhang Z [7]
Li X [7]
Huang S [6]
Basbaum AI [6]
Xia A [6]
Wang X [6]
Wang Y [6]
Ramakrishnan V [6]
Xu Z [6]
Shoichet BK [6]
Zhao J [6]
Zilberg G [6]
Bottcher B [6]
Yang J [6]
Rasmussen T [6]
Cheng X [6]
Hu Z [6]
Chen H [6]
Bhardwaj K [6]
Pacheco-fiallos B [5]
Gerrard EJ [5]
Krumm B [5]
Li X [5]
Behrmann E [5]
Sames D [5]
Liu ZJ [5]
Ni R [5]
Robinson CV [5]
Zhu L [5]
Brilot AF [5]
Puhringer T [5]
He Y [5]
Cary BP [5]
Liu J [5]
Ke B [5]
Russell IC [5]
Handler D [5]
Wang Q [5]
Lankri D [5]
Faraway RW [5]
Grigorieff N [5]
Tian X [5]
Belousoff MJ [5]
Roitinger E [5]
Loerke J [5]
Serrano IC [5]
Yu J [5]
Gloriam DE [5]
Brennecke J [5]
Chen Z [5]
Xu C [5]
Plaschka C [5]
Szalay MF [5]
Russo SJ [5]
Philipps AW [5]
Yin W [5]

Journal

Software

Microscope

Electron Source

Film or detector model

External links

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EMD-66346

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Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the pre-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9wxh
Q-score: 0.61

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

To Be Published

EMD-66347

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3D View

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the post-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9wxi
Q-score: 0.5

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

To Be Published

EMD-66348

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3D View

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a non-cognate target RNA in the pre-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9wxj
Q-score: 0.59

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

To Be Published

EMD-69899

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3D View

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the pre-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.7 Å
EM Method: Single-particle

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

To Be Published

EMD-69900

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3D View

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the post-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.9 Å
EM Method: Single-particle

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

To Be Published

EMD-69901

Download Map

3D View

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a non-cognate target RNA in the pre-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.8 Å
EM Method: Single-particle

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

To Be Published

EMD-53473

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Mouse Ribosome Classical Pre translocation state

CryoEM

Release date: May 27, 2026
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 9qzp
Q-score: 0.147

Astier A, Caruso M, Vereecke S, Santo PE, Capron C, Froment C, Rinaldi D, Cabrerizo Granados D, Leclercq M, Royaert J, Verbeeck J, Pasau N, Plassart L, Pepe D, Verbruggen S, Paraqindes H, Lebaron S, Marcel V, Durand S, Chapat C, Menschaert G, Close P, Rapino F, Catez F, Marcoux J, Plisson-Chastang C, De Keersmaecker K