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IHM

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Current Database

  • EMDB [25]
  • EMPIAR [6]

Current status

  • REL [31]

Sample type

  • Complex [25]
  • Ligand [18]
  • Protein [17]
  • DNA [2]
  • RNA [2]

Organism

  • Homo sapiens [13]
  • Mus musculus [6]
  • Euglena gracilis [4]
  • Tetrahymena thermophila [2]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [21]
  • Subtomogram averaging [4]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [12]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 20Å and < 30Å [4]

Model molecular weight

  • 50-100 kDa [5]
  • 100-250 kDa [1]
  • 250-500 kDa [3]
  • 500-1000 kDa [6]
  • 1-2 MDa [3]
  • 2-5 MDa [1]

Release Date

  • 2026 [9]
  • 2025 [6]
  • 2024 [10]
  • 2023 [2]
  • 2022 [1]
  • 2020 [2]
  • 2019 [1]

Author by name

  • Auguin D [5]
  • Cai Q [5]
  • He J [5]
  • Houdusse A [5]
  • Kikuti C [5]
  • Nandwani N [5]
  • Pathak D [5]
  • Robert-paganin J [5]
  • Ruppel KM [5]
  • She J [5]
  • Spudich JA [5]
  • Wang M [5]
  • Zhang SA [5]
  • Barendse P [4]
  • Chen L [4]
  • Correia BE [4]
  • Han F [4]
  • He Z [4]
  • He ZX [4]
  • Hegge JW [4]
  • Hu Y [4]
  • Hu YQ [4]
  • Janssen PML [4]
  • Joo C [4]
  • Lindhoud S [4]
  • Liu J [4]
  • Niault T [4]
  • Nickel L [4]
  • Pacesa M [4]
  • Park K [4]
  • Pinto JR [4]
  • Rastegarpouyani H [4]
  • Roosjen M [4]
  • Sivaraman A [4]
  • Swarts DC [4]
  • Taylor KA [4]
  • Tian H [4]
  • Tian HT [4]
  • Wang L [4]
  • Wang Y [4]
  • Westphal AH [4]
  • Wu M [4]
  • Wu MC [4]
  • Zhang DK [4]
  • Zhou J [4]
  • Zhou L [4]
  • Van Drimmelen M [4]
  • Van Der Oost J [4]
  • Ayoub N [3]
  • Han FZ [3]
  • Juille M [3]
  • Kikuti CM [3]
  • Lannes L [3]
  • Rety S [3]
  • Case DA [2]
  • Chinthalapudi K [2]
  • Chiu W [2]
  • Das R [2]
  • Grandinetti G [2]
  • Grinzato A [2]
  • Heissler SM [2]
  • Kandiah E [2]
  • Kretsch RC [2]
  • Li S [2]
  • Moussaoui D [2]
  • Palo MZ [2]
  • Pintilie G [2]
  • Sellers JR [2]
  • Zhang K [2]
  • Abascal-palacios G [1]
  • Bai X [1]
  • Bai XC [1]
  • Bartenschlager R [1]
  • Beckwith MS [1]
  • Beuron F [1]
  • Boermel M [1]
  • Boulant S [1]
  • Bustillo K [1]
  • Cerikan B [1]
  • Chatel-chaix L [1]
  • Cortese M [1]
  • Frankish J [1]
  • Gallagher-jones M [1]
  • Gao H [1]
  • Gao Z [1]
  • Gross V [1]
  • Gu Z [1]
  • Hennies J [1]
  • Horvat NK [1]
  • Hu W [1]
  • Jochem L [1]
  • Köhrer S [1]
  • Laketa V [1]
  • Lee JY [1]
  • Mizzon G [1]
  • Mocaer K [1]
  • Neufeldt CJ [1]
  • Oorschot VMJ [1]
  • Ophus C [1]
  • Pape C [1]

Author by ORCID

  • She J [5]
  • Pinto JR [4]
  • Wang Y [4]
  • Taylor KA [4]
  • Chen L [4]
  • Zhou L [4]
  • Janssen PML [4]
  • Rastegarpouyani H [4]
  • Liu J [4]
  • Kikuti C [2]
  • Robert-paganin J [2]
  • Das R [2]
  • Ruppel KM [2]
  • Spudich JA [2]
  • Kretsch RC [2]
  • Nandwani N [2]
  • Li S [2]
  • Houdusse A [2]
  • Chiu W [2]
  • Kandiah E [2]
  • Zhang K [2]
  • Auguin D [2]
  • Palo MZ [2]
  • Sellers JR [1]
  • Vannini A [1]
  • Xu Y [1]
  • Gao Z [1]
  • Grandinetti G [1]
  • Xia B [1]
  • Abascal-palacios G [1]
  • Xu HE [1]
  • Heissler SM [1]
  • Beuron F [1]
  • Chinthalapudi K [1]

Journal

  • NAT COMMUN [12]
  • PNAS [9]
  • NATURE [2]
  • CELL DISCOV [1]
  • CELL HOST MICROBE [1]
  • COMMUN BIOL [1]
  • SCIENCE [1]

Software

  • CRYOSPARC [11]
  • CTFFIND [4]
  • RELION [2]

Microscope

  • TFS KRIOS [16]
  • FEI TITAN KRIOS [8]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [25]

Film or detector model

  • GATAN K3 6K X 4K [16]
  • FEI FALCON IV 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • GATAN K2 SUMMIT 4K X 4K [1]

EMPIAR Experiment type

  • IHM [6]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [4]
  • MICROGRAPHS - SINGLE FRAME [2]
  • RECONSTRUCTED VOLUMES [1]
  • TILT SERIES [1]

External links

  • PDB [19]
  • ChEBI [18]
  • AlphaFold DB [17]
  • DrugBank [17]
  • PDBe-Kb [17]
  • UniProt [17]
  • ChEMBL [15]
  • Gene Ontology [14]
  • InterPro [10]
  • Pfam [10]
  • EMPIAR [6]
  • Complex Portal [3]
  • EMDB [1]
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Showing 1 - 10 of 31. Page 1 of 4
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EMD-73798
Download Map
3D View
Cryo-EM map of human NM2B 10S state
CryoEM
Focused map
Release date: July 8, 2026
Resolution: 9.83 Å
EM Method: Single-particle

Heissler SM, Grandinetti G, Sellers JR, Chinthalapudi K

Nat Commun (2026) 17 [ Pubmed: 42323327 DOI: doi:10.1038/s41467-026-74674-w ]

EMD-73811
Download Map
3D View
Cryo-EM structure of human nonmuscle myosin-2B, Class 3
CryoEM
Release date: July 8, 2026
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 9z4q
Q-score: 0.151
Similar entry percentile: 4%

Heissler SM, Grandinetti G, Sellers JR, Chinthalapudi K

Nat Commun (2026) 17 [ Pubmed: 42323327 DOI: doi:10.1038/s41467-026-74674-w ]

EMD-56106
Download Map
3D View
Human Cardiac Interacting Heads Motif, E525K mutant
CryoEM
Release date: June 17, 2026
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 9tpj
Q-score: 0.385
Similar entry percentile: 12%

Auguin D, Lannes L, Kikuti C, Ayoub N, Juille M, Rety S, Nandwani N, Pathak D, Ruppel KM, Spudich JA, Robert-Paganin J, Houdusse A

Nat Commun (2026) 17 [ Pubmed: 42243087 DOI: doi:10.1038/s41467-026-73572-5 ]

EMD-56107
Download Map
3D View
Human Cardiac Interacting Heads Motif, Conformation B
CryoEM
Release date: June 17, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9tpk
Q-score: 0.339
Similar entry percentile: 26%

Auguin D, Lannes L, Kikuti C, Ayoub N, Juille M, Rety S, Nandwani N, Pathak D, Ruppel KM, Spudich JA, Robert-Paganin J, Houdusse A

Nat Commun (2026) 17 [ Pubmed: 42243087 DOI: doi:10.1038/s41467-026-73572-5 ]

EMD-56108
Download Map
3D View
Human Cardiac Interacting Heads Motif, Conformation A
CryoEM
Release date: June 17, 2026
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9tpl
Q-score: 0.286
Similar entry percentile: 8%

Auguin D, Lannes L, Kikuti C, Ayoub N, Juille M, Rety S, Nandwani N, Pathak D, Ruppel KM, Spudich JA, Robert-Paganin J, Houdusse A

Nat Commun (2026) 17 [ Pubmed: 42243087 DOI: doi:10.1038/s41467-026-73572-5 ]

EMPIAR-13379
Clostridium butyricum Argonaute catalytic mutant in ternary form (bound to guide DNA and target DNA)
Release date: March 20, 2026
Dataset size: 4.7 TB
Experiment type: IHM

Barendse P, van Drimmelen M, Pacesa M, Sivaraman A, Zhang DK, Nickel L, Niault T, Lindhoud S, Roosjen M, Hegge JW, Park K, Correia BE, van der Oost J, Joo C, Westphal AH, Swarts DC

To Be Published

Image sets:
  • Movies of CbAgo catalytic mutant in ternary form, complexed with guide DNA and target DNA, mix of dimers and monomers
EMPIAR-13378
Clostridium butyricum Argonaute wild type apo protein complexed with de novo designed binder2
Release date: March 19, 2026
Dataset size: 3.1 TB
Experiment type: IHM

Barendse P, van Drimmelen M, Pacesa M, Sivaraman A, Zhang DK, Nickel L, Niault T, Lindhoud S, Roosjen M, Hegge JW, Park K, Correia BE, van der Oost J, Joo C, Westphal AH, Swarts DC

To Be Published

Image sets:
  • Movies of CbAgo wild type in apo form, complexed with de novo designed binder2
EMPIAR-13371
Clostridium butyricum Argonaute catalytic mutant in ternary form (bound to guide DNA and target DNA) and de novo designed Dimbd2
Release date: March 18, 2026
Dataset size: 4.0 TB
Experiment type: IHM

Barendse P, van Drimmelen M, Pacesa M, Sivaraman A, Zhang DK, Nickel L, Niault T, Lindhoud S, Roosjen M, Hegge JW, Park K, Correia BE, van der Oost J, Joo C, Westphal AH, Swarts DC

To Be Published

Image sets:
  • Movies of CbAgo catalytic mutant in ternary form, complexed with guide DNA, target DNA, and de novo designed dimer disrupting binder Dimbd2
EMPIAR-13369
Clostridium butyricum Argonaute wild type protein in apo form
Release date: March 17, 2026
Dataset size: 3.1 TB
Experiment type: IHM

Barendse P, van Drimmelen M, Pacesa M, Sivaraman A, Zhang DK, Nickel L, Niault T, Lindhoud S, Roosjen M, Hegge JW, Park K, Correia BE, van der Oost J, Joo C, Westphal AH, Swarts DC

To Be Published

Image sets:
  • Movies of CbAgo wild type in apo form
EMD-62435
Download Map
3D View
Taurine bound hTAUT
CryoEM
Release date: July 2, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9kmj
Q-score: 0.52
Similar entry percentile: 69%

Wang M, He J, Cai Q, Zhang SA, She J

PNAS (2025) 122 pp. e2425549122-e2425549122 [ Pubmed: 40601627 DOI: doi:10.1073/pnas.2425549122 ]

Sort by: Download
Showing 1 - 10 of 31. Page 1 of 4
Display:
Statistics
×

Download



Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [25]
  • EMPIAR [6]

Current status

  • REL [31]

Sample type

  • Complex [25]
  • Ligand [18]
  • Protein [17]
  • DNA [2]
  • RNA [2]

Organism

  • Homo sapiens [13]
  • Mus musculus [6]
  • Euglena gracilis [4]
  • Tetrahymena thermophila [2]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [21]
  • Subtomogram averaging [4]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [12]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 20Å and < 30Å [4]

Model molecular weight

  • 50-100 kDa [5]
  • 100-250 kDa [1]
  • 250-500 kDa [3]
  • 500-1000 kDa [6]
  • 1-2 MDa [3]
  • 2-5 MDa [1]

Release Date

  • 2026 [9]
  • 2025 [6]
  • 2024 [10]
  • 2023 [2]
  • 2022 [1]
  • 2020 [2]
  • 2019 [1]

Author by name

  • Auguin D [5]
  • Cai Q [5]
  • He J [5]
  • Houdusse A [5]
  • Kikuti C [5]
  • Nandwani N [5]
  • Pathak D [5]
  • Robert-paganin J [5]
  • Ruppel KM [5]
  • She J [5]
  • Spudich JA [5]
  • Wang M [5]
  • Zhang SA [5]
  • Barendse P [4]
  • Chen L [4]
  • Correia BE [4]
  • Han F [4]
  • He Z [4]
  • He ZX [4]
  • Hegge JW [4]
  • Hu Y [4]
  • Hu YQ [4]
  • Janssen PML [4]
  • Joo C [4]
  • Lindhoud S [4]
  • Liu J [4]
  • Niault T [4]
  • Nickel L [4]
  • Pacesa M [4]
  • Park K [4]
  • Pinto JR [4]
  • Rastegarpouyani H [4]
  • Roosjen M [4]
  • Sivaraman A [4]
  • Swarts DC [4]
  • Taylor KA [4]
  • Tian H [4]
  • Tian HT [4]
  • Wang L [4]
  • Wang Y [4]
  • Westphal AH [4]
  • Wu M [4]
  • Wu MC [4]
  • Zhang DK [4]
  • Zhou J [4]
  • Zhou L [4]
  • Van Drimmelen M [4]
  • Van Der Oost J [4]
  • Ayoub N [3]
  • Han FZ [3]
  • Juille M [3]
  • Kikuti CM [3]
  • Lannes L [3]
  • Rety S [3]
  • Case DA [2]
  • Chinthalapudi K [2]
  • Chiu W [2]
  • Das R [2]
  • Grandinetti G [2]
  • Grinzato A [2]
  • Heissler SM [2]
  • Kandiah E [2]
  • Kretsch RC [2]
  • Li S [2]
  • Moussaoui D [2]
  • Palo MZ [2]
  • Pintilie G [2]
  • Sellers JR [2]
  • Zhang K [2]
  • Abascal-palacios G [1]
  • Bai X [1]
  • Bai XC [1]
  • Bartenschlager R [1]
  • Beckwith MS [1]
  • Beuron F [1]
  • Boermel M [1]
  • Boulant S [1]
  • Bustillo K [1]
  • Cerikan B [1]
  • Chatel-chaix L [1]
  • Cortese M [1]
  • Frankish J [1]
  • Gallagher-jones M [1]
  • Gao H [1]
  • Gao Z [1]
  • Gross V [1]
  • Gu Z [1]
  • Hennies J [1]
  • Horvat NK [1]
  • Hu W [1]
  • Jochem L [1]
  • Köhrer S [1]
  • Laketa V [1]
  • Lee JY [1]
  • Mizzon G [1]
  • Mocaer K [1]
  • Neufeldt CJ [1]
  • Oorschot VMJ [1]
  • Ophus C [1]
  • Pape C [1]

Author by ORCID

  • She J [5]
  • Pinto JR [4]
  • Wang Y [4]
  • Taylor KA [4]
  • Chen L [4]
  • Zhou L [4]
  • Janssen PML [4]
  • Rastegarpouyani H [4]
  • Liu J [4]
  • Kikuti C [2]
  • Robert-paganin J [2]
  • Das R [2]
  • Ruppel KM [2]
  • Spudich JA [2]
  • Kretsch RC [2]
  • Nandwani N [2]
  • Li S [2]
  • Houdusse A [2]
  • Chiu W [2]
  • Kandiah E [2]
  • Zhang K [2]
  • Auguin D [2]
  • Palo MZ [2]
  • Sellers JR [1]
  • Vannini A [1]
  • Xu Y [1]
  • Gao Z [1]
  • Grandinetti G [1]
  • Xia B [1]
  • Abascal-palacios G [1]
  • Xu HE [1]
  • Heissler SM [1]
  • Beuron F [1]
  • Chinthalapudi K [1]

Journal

  • NAT COMMUN [12]
  • PNAS [9]
  • NATURE [2]
  • CELL DISCOV [1]
  • CELL HOST MICROBE [1]
  • COMMUN BIOL [1]
  • SCIENCE [1]

Software

  • CRYOSPARC [11]
  • CTFFIND [4]
  • RELION [2]

Microscope

  • TFS KRIOS [16]
  • FEI TITAN KRIOS [8]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [25]

Film or detector model

  • GATAN K3 6K X 4K [16]
  • FEI FALCON IV 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • GATAN K2 SUMMIT 4K X 4K [1]

EMPIAR Experiment type

  • IHM [6]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [4]
  • MICROGRAPHS - SINGLE FRAME [2]
  • RECONSTRUCTED VOLUMES [1]
  • TILT SERIES [1]

External links

  • PDB [19]
  • ChEBI [18]
  • AlphaFold DB [17]
  • DrugBank [17]
  • PDBe-Kb [17]
  • UniProt [17]
  • ChEMBL [15]
  • Gene Ontology [14]
  • InterPro [10]
  • Pfam [10]
  • EMPIAR [6]
  • Complex Portal [3]
  • EMDB [1]