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Current Database
- EMDB [17036]
- EMPIAR [10]
Current status
- REL [17046]
Sample type
- Complex [13463]
- Protein [11064]
- Ligand [6026]
- RNA [1490]
- Virus [1433]
- Sample [1127]
- Cellular component [1109]
- DNA [996]
- Cell [568]
- Other [69]
- Tissue [69]
Organism
- Homo sapiens [5413]
- Synthetic construct [1479]
- Mus musculus [1030]
- Escherichia coli [912]
- Saccharomyces cerevisiae [801]
- Severe acute respiratory syndrome coronavirus [620]
- Escherichia coli [497]
- Bos taurus [389]
- Rattus norvegicus [353]
- Oryctolagus cuniculus [348]
- Human immunodeficiency virus 1 [343]
- Sus scrofa [295]
- Saccharomyces cerevisiae [242]
- Xenopus laevis [198]
- Chlamydomonas reinhardtii [148]
- Lama glama [136]
- Bacillus subtilis [128]
- Enterobacteria phage m13 [124]
- Gallus gallus [122]
- Arabidopsis thaliana [118]
- Trypanosoma brucei [91]
- Mycolicibacterium smegmatis [86]
- Escherichia coli [84]
- Tetrahymena thermophila [80]
- Mycobacterium tuberculosis [75]
- Danio rerio [72]
- Mycoplasma pneumoniae [70]
- Thermus thermophilus [68]
- Enterobacteria phage t4 [65]
- Human herpesvirus 1 [62]
- Drosophila melanogaster [61]
- Macaca mulatta [57]
- Polytomella sp. pringsheim 198.80 [55]
- Chaetomium thermophilum [53]
- Hepatitis b virus [52]
- Staphylococcus aureus [52]
- Influenza a virus [49]
- Spinacia oleracea [48]
- Mycobacterium tuberculosis [47]
- Mycolicibacterium smegmatis [46]
- Schizosaccharomyces pombe [46]
- Trichomonas vaginalis [45]
- Salmonella enterica [44]
- Parengyodontium album [43]
- Plasmodium falciparum [42]
- Pseudomonas aeruginosa [41]
- Torpedo marmorata [40]
- Cricetulus griseus [39]
- Pseudomonas aeruginosa [39]
- Enterovirus d [38]
- Simian virus 40 [37]
- Ovis aries [37]
- Saccharomyces cerevisiae [36]
- Euglena gracilis [36]
- Caenorhabditis elegans [36]
- Staphylococcus phage 812 [35]
- Vibrio cholerae [35]
- Porphyridium purpureum [35]
- Neurospora crassa [35]
- Trypanosoma brucei [35]
- Plasmodium falciparum [33]
- Schizosaccharomyces pombe [33]
- Brome mosaic virus [32]
- Saccharomyces cerevisiae [32]
- Amanita phalloides [32]
- Escherichia virus t7 [31]
- Vicugna pacos [31]
- Caulobacter vibrioides [31]
- Sus scrofa [31]
- Rous sarcoma virus [30]
- Potato virus y [30]
- Human coronavirus hku1 [30]
- Thermoplasma acidophilum [28]
- Enterobacteria phage t4 [28]
- Synechocystis sp. pcc 6803 [27]
- Bacillus subtilis [27]
- Dna molecule [27]
- Severe acute respiratory syndrome coronavirus [27]
- Enterovirus c [26]
- Pseudomonas phage jbd30 [26]
- Toxoplasma gondii [26]
- Equus caballus [25]
- Listeria innocua [24]
- Shigella flexneri [24]
- Vibrio cholerae [24]
- Severe acute respiratory syndrome coronavirus [23]
- Monkeypox virus [22]
- Adeno-associated dependoparvovirus a [22]
- Severe acute respiratory syndrome coronavirus [22]
- Chaetomium thermophilum [22]
- (no species) [21]
- Middle east respiratory syndrome-related coronavirus [21]
- Klebsiella pneumoniae [21]
- Komagataella phaffii [21]
- Escherichia coli [21]
- Vaccinia virus [20]
- Zaire ebolavirus [20]
- Streptococcus thermophilus [20]
- Geobacillus stearothermophilus [20]
- Dickeya dadantii [20]
EM Method
- Single-particle [13855]
- Tomography [1197]
- Subtomogram averaging [1157]
- Helical reconstruction [707]
- Electron Crystallography [120]
Resolution
- < 2Å [207]
- ≥ 2Å and < 3Å [3135]
- ≥ 3Å and < 4Å [6804]
- ≥ 4Å and < 5Å [1828]
- ≥ 5Å and < 6Å [488]
- ≥ 6Å and < 8Å [954]
- ≥ 8Å and < 12Å [957]
- ≥ 12Å and < 16Å [367]
- ≥ 16Å and < 20Å [290]
- ≥ 20Å and < 30Å [696]
- ≥ 30Å [810]
Model molecular weight
- 0-50 kDa [9]
- 50-100 kDa [27]
- 100-250 kDa [101]
- 250-500 kDa [95]
- 500-1000 kDa [57]
- 1-2 MDa [28]
- 2-5 MDa [24]
- 5-10 MDa [4]
- > 10 MDa [4]
Release Date
- 2026 [480]
- 2025 [3412]
- 2024 [2885]
- 2023 [2133]
- 2022 [1765]
- 2021 [1492]
- 2020 [1381]
- 2019 [920]
- 2018 [737]
- 2017 [410]
- 2016 [553]
- 2015 [299]
- 2014 [146]
- 2013 [133]
- 2012 [52]
- 2011 [42]
- 2010 [41]
- 2009 [42]
- 2008 [24]
- 2007 [41]
- 2006 [27]
- 2005 [18]
- 2004 [11]
- 2003 [1]
- 2002 [1]
Author by name
- Liu J [771]
- Ren G [692]
- Zhang M [579]
- Zhang Y [425]
- Wang S [392]
- Wu H [383]
- Liu Y [371]
- Zhang X [370]
- Zhou ZH [369]
- Hu Z [362]
- Gang O [343]
- Zhou L [325]
- Ward AB [321]
- Wang J [278]
- Wang Y [270]
- Lyumkis D [266]
- Liu S [264]
- Li Y [261]
- Zhang Z [232]
- Gao Y [219]
- Andersen ES [212]
- Geary C [206]
- Zhang L [205]
- Mcrae EKS [202]
- Baumeister W [197]
- Li S [195]
- Wang H [195]
- Wang L [192]
- Williamson JR [190]
- Yang X [190]
- Marks AR [188]
- Skiniotis G [186]
- Briggs JAG [185]
- Miotto MC [185]
- Plevka P [185]
- Zhang K [185]
- Fuzik T [170]
- Li Z [167]
- Raunser S [165]
- Yang Y [162]
- Shi Y [160]
- Dridi H [159]
- Reiken S [159]
- Panova O [158]
- Tchagou C [158]
- Weninger G [158]
- Zhang S [155]
- Brown A [154]
- Rubinstein JL [154]
- Wu M [154]
- Kobilka BK [152]
- Wang X [151]
- Cramer P [149]
- Kato T [148]
- Zhou Q [148]
- Lander GC [147]
- Li X [147]
- Gmeiner P [145]
- Hu Y [145]
- Chiu W [144]
- Hildebrand PW [144]
- Hilger D [144]
- Seven AB [144]
- Zhang R [143]
- Papasergi-scott MM [142]
- Xia X [142]
- Yuan Q [142]
- Greber BJ [141]
- Wang Z [141]
- Amunts A [140]
- He F [140]
- Eskici G [139]
- Li J [139]
- Batebi H [138]
- Casiraghi M [138]
- Maul L [138]
- Perez-hernandez G [138]
- Dong X [137]
- Wronska A [137]
- Rossmann MG [135]
- Zhang YY [135]
- Gonen T [132]
- Kotecha A [132]
- Chen Z [131]
- Lei D [130]
- Liu H [128]
- Zhang J [126]
- Itoh Y [125]
- Ozorowski G [125]
- Sheng K [125]
- Zhu Y [125]
- Rabuck-gibbons JN [120]
- Wu J [120]
- Zhou J [120]
- Chen J [119]
- Cottrell CA [119]
- Guo H [119]
- Li W [119]
- Plitzko JM [119]
- Su H [119]
Author by ORCID
- Kwong PD [7]
- Rubinstein JL [6]
- Cottrell CA [5]
- Skiniotis G [5]
- Guo H [4]
- Southworth DR [4]
- Ward AB [4]
- Greber BJ [4]
- Stahlberg H [4]
- Fuzik T [4]
- Tse E [4]
- Zhou T [4]
- Liu B [4]
- Clarke OB [4]
- Plevka P [4]
- Blaza JN [3]
- Kobilka BK [3]
- Zhang K [3]
- Noble AJ [3]
- Yang J [3]
- Raunser S [3]
- Chai P [3]
- Kim K [3]
- Brown A [3]
- Crowe JE [3]
- Deville C [3]
- Mer G [3]
- Kuhlbrandt W [3]
- Radford SE [3]
- Markus SM [3]
- Ranson NA [3]
- Kotecha A [3]
- Ramakrishnan V [3]
- Gatsogiannis C [3]
- Amunts A [3]
- Botuyan MV [3]
- Jakobi AJ [3]
- Cushing VI [3]
- Wang Y [3]
- Locher KP [3]
- Cali T [3]
- Cerutti G [3]
- Bukau B [3]
- Mills DJ [3]
- Johnston JD [3]
- Orlova EV [3]
- Vallese F [3]
- Biggin PC [2]
- Hilger D [2]
- Hamdan SM [2]
- Yates 3Rd Jr [2]
- Wilkinson M [2]
- Schneider C [2]
- Montgomery MG [2]
- Sachse C [2]
- Murphy BJ [2]
- Kaushal PS [2]
- Sampson JM [2]
- Diedrich JK [2]
- Koh AF [2]
- Burton DR [2]
- Schiffner T [2]
- Podobnik M [2]
- Behrmann E [2]
- Ekemezie CL [2]
- Hill CH [2]
- De Martin Garrido N [2]
- Harrison SC [2]
- Ni T [2]
- Prumbaum D [2]
- Guthmiller JJ [2]
- Itoh Y [2]
- Glatt S [2]
- Walker JE [2]
- Li H [2]
- Atanassov I [2]
- Riegelhaupt PM [2]
- Hirst J [2]
- Lin J [2]
- Sergiev P [2]
- Murciano B [2]
- Williams DR [2]
- Wright JJ [2]
- Pinto JR [2]
- Armache JP [2]
- Xia X [2]
- Tehseen M [2]
- Doyle LA [2]
- Tonggu L [2]
- Luque D [2]
- Wang W [2]
- Rosenthal PB [2]
- Ilangovan A [2]
- Nygaard R [2]
- Rybak MY [2]
- Schwartz CL [2]
- Batebi H [2]
- Rebowski G [2]
- Ashraf KU [2]
- Brown CR [2]
Journal
- NAT COMMUN [3372]
- NATURE [1647]
- TO BE PUBLISHED [1536]
- PNAS [1126]
- SCIENCE [1048]
- NAT STRUCT MOL BIOL [1036]
- BIORXIV [937]
- ELIFE [633]
- CELL [610]
- SCI ADV [584]
- STRUCTURE [482]
- MOL CELL [421]
- NUCLEIC ACIDS RES [293]
- CELL REP [237]
- J VIROL [222]
- COMMUN BIOL [214]
- EMBO J [207]
- ACTA CRYSTALLOGR D STRUCT BIOL [162]
- J MOL BIOL [147]
- J STRUCT BIOL [139]
- PLOS PATHOG [136]
- J BIOL CHEM [128]
- CELL RES [124]
- NAT MICROBIOL [116]
- NAT CHEM BIOL [113]
- NAT METHODS [96]
- SCI REP [81]
- PROTEIN SCI [72]
- J CELL BIOL [70]
- CELL DISCOV [58]
- MBIO [58]
- J STRUCT BIOL X [56]
- IMMUNITY [53]
- FRONT ENDOCRINOL [51]
- J CLIN INV [50]
- PLOS BIOL [50]
- NAT PLANTS [47]
- EMBO REP [43]
- COMMUN CHEM [42]
- CELL HOST MICROBE [40]
- IUCRJ [39]
- LIFE SCI ALLIANCE [39]
- MOL BIOL CELL [38]
- J AM CHEM SOC [37]
- ACS NANO [36]
- NAT NANOTECHNOL [35]
- DEV CELL [34]
- ISCIENCE [34]
- INT J MOL SCI [31]
- NPJ VACCINES [30]
- NAT CATAL [26]
- VIROLOGY [26]
- VIRUSES [24]
- SCI TRANSL MED [23]
- BIOMOLECULES [22]
- FEBS LETT [22]
- PLOS ONE [22]
- RES SQ [22]
- BIOCHEMISTRY [21]
- CURR BIOL [21]
- J.MOL.CELL.CARDIOL. [21]
- NAT MATER [21]
- NEURON [21]
- BLOOD [20]
- INT J BIOL MACROMOL [20]
- GENES DEV [19]
- J MED CHEM [19]
- ACS CENT SCI [18]
- ADV SCI [18]
- ANGEW CHEM INT ED ENGL [16]
- MOL PHARMACOL [16]
- PROTEIN CELL [16]
- MOL MICROBIOL [15]
- PNAS NEXUS [15]
- RNA [14]
- SIGNAL TRANSDUCT TARGET THER [14]
- J EXP MED [13]
- ACTA NEUROPATHOL [12]
- BIOCHEM J [12]
- FRONT IMMUNOL [12]
- J LIPID RES [12]
- NAT BIOTECHNOL [12]
- NAT CELL BIOL [12]
- ACS CHEM BIOL [11]
- BIOCHEM BIOPHYS RES COMMUN [11]
- CELL REP PHYS SCI [10]
- J BACTERIOL [10]
- J CELL SCI [9]
- MICROLIFE [9]
- MICROORGANISMS [9]
- BIOPHYS J [8]
- FEBS J [8]
- FEBS OPEN BIO [8]
- FRONT MOL BIOSCI [8]
- MOLECULES [8]
- OPEN BIOL [8]
- PHILOS TRANS R SOC LOND, B, BIOL SCI [8]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [7]
- COMMUNICATIONS CHEMISTRY [7]
- FASEB J [7]
Software
- RELION [7003]
- CRYOSPARC [6420]
- CTFFIND [1455]
- GCTF [1059]
- IMOD [538]
- IPET [443]
- TOMOCTF [379]
- WARP [342]
- FREALIGN [265]
- DYNAMO [202]
- CISTEM [188]
- SPIDER [158]
- CHIMERA [157]
- EMAN2 [137]
- EMAN [135]
- COOT [132]
- CRYOLO [114]
- PHENIX [103]
- PEET [100]
- MATLAB [99]
- JSPR [86]
- AV3 [76]
- PYTOM [75]
- UCSF CHIMERAX [74]
- SPHIRE [69]
- NOVACTF [63]
- UCSF CHIMERA [61]
- TOM TOOLBOX [60]
- XMIPP [55]
- CTFPHASEFLIP [53]
- ETOMO [45]
- STOPGAP [39]
- IMAGIC [37]
- TOM [36]
- AIMLESS [32]
- AUTO3DEM [32]
- CTFFIND3 [29]
- APPION [28]
- J3DR [22]
- SPRING [22]
- SIMPLE [21]
- BSOFT [20]
- CTFFIND3, RELION [20]
- CTFTILT [20]
- EMFIT [20]
- JALIGN [20]
- PRIISM/IVE [19]
- TOMO3D [18]
- EM3DR2 [17]
- IHRSR [17]
- ISOLDE [17]
- SUBTOM [17]
- CTFFIND4 [16]
- M [16]
- UNBLUR, CTFFIND4, FREALIGN [16]
- COMET [15]
- IMIRS [15]
- MRC [15]
- SCIPION [15]
- EMAN1 [14]
- EMCLARITY [14]
- CRYODRGN [13]
- MDFF [13]
- SITUS [13]
- FREALIX [12]
- REFMAC [12]
- CHIMERA, COOT [11]
- CHIMERA, MDFF [11]
- CHIMERA, SITUS [11]
- SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
- SPARX [11]
- AMIRA [10]
- EMAN2, RELION [10]
- EMAN2, RELION, 1.3 [10]
- FOCUS [10]
- EMAN1, FREALIGN [9]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
- O [9]
- TOM, AV3 [9]
- EMAN, EMAN2, MPSA [8]
- EMIRA [8]
- JSPR, EMAN, EMAN2 [8]
- JSPR, EMAN2, EMAN [8]
- RELION, FREALIGN [8]
- URO [8]
- AMIRAFPM [7]
- EMAN2, IMAGIC, RELION-1.3 [7]
- EMAN2, SPIDER, XMIPP [7]
- I3 [7]
- IMOD, TOM, AV3 [7]
- PFT2, EM3DR2, POR, P3DR [7]
- PHASER [7]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [7]
- SPIDER, TOM_TOOLBOX [7]
- ARETOMO [6]
- AV3, TOM, PYTOM [6]
- CHIMERA, ROSETTA, PHENIX, COOT [6]
- CTFFIND3, EMAN2, RELION [6]
- EMAN, FREALIGN [6]
- EMAN2, SPIDER, BESPOKE-2D-ALIGNMENT, BESPOKE-X-AND-Y-SHIFTING [6]
Microscope
- FEI TITAN KRIOS [11227]
- TFS KRIOS [3277]
- FEI TALOS ARCTICA [744]
- TFS GLACIOS [390]
- FEI TECNAI F20 [306]
- ZEISS LIBRA120PLUS [222]
- FEI TITAN [164]
- FEI POLARA 300 [81]
- FEI TECNAI ARCTICA [77]
- TFS TALOS [68]
- JEOL 2200FS [67]
- FEI TECNAI F30 [59]
- FEI TECNAI 20 [53]
- FEI/PHILIPS CM300FEG/T [42]
- FEI TECNAI 12 [39]
- FEI/PHILIPS CM200FEG [35]
- JEOL 2010F [30]
- TFS TALOS F200C [24]
- JEOL 3200FS [18]
- JEOL 2100F [16]
- FEI TECNAI SPIRIT [15]
- JEOL 3100FFC [14]
- FEI/PHILIPS CM120T [13]
- JEOL 1400/HR YPS FEG [10]
- JEOL CRYO ARM 300 [9]
- JEOL 3100FEF [7]
- JEOL 3200FSC [6]
- JEOL 4000EX [6]
- JEOL 2100 [5]
- FEI/PHILIPS CM200T [4]
- FEI/PHILIPS CM300FEG/HE [4]
- JEOL 2200FSC [4]
- JEOL 3000SFF [4]
- OTHER [4]
- FEI TECNAI 10 [3]
- JEOL 1200EXII [2]
- JEOL 1230 [2]
- JEOL KYOTO-3000SFF [2]
- FEI TECNAI SPHERA [1]
- FEI/PHILIPS CM12 [1]
- FEI/PHILIPS CM200FEG/ST [1]
- FEI/PHILIPS EM400 [1]
- FEI/PHILIPS EM420 [1]
- HITACHI EF2000 [1]
- HITACHI H-9500SD [1]
- JEOL 1400 [1]
- JEOL 2010HC [1]
- TFS TITAN THEMIS [1]
Electron Source
- FIELD EMISSION GUN [16669]
- LAB6 [337]
- TUNGSTEN HAIRPIN [20]
- OTHER [11]
Film or detector model
- GATAN K3 BIOQUANTUM 6K X 4K [4062]
- GATAN K2 SUMMIT 4K X 4K [3690]
- GATAN K3 6K X 4K [3184]
- FEI FALCON IV 4K X 4K [1453]
- FEI FALCON III 4K X 4K [1218]
- FEI FALCON II 4K X 4K [731]
- GATAN K2 QUANTUM 4K X 4K [688]
- TFS FALCON 4I 4K X 4K [471]
- GATAN ULTRASCAN 4000 4K X 4K [416]
- KODAK SO-163 FILM [247]
- GATAN K2 4K X 4K [139]
- GATAN K3 BIOCONTINUUM 6K X 4K [123]
- TVIPS TEMCAM-F416 4K X 4K [92]
- OTHER [79]
- FEI EAGLE 4K X 4K [69]
- FEI CETA 4K X 4K [62]
- DIRECT ELECTRON DE-20 5K X 3K [55]
- FEI FALCON I 4K X 4K [35]
- GATAN K2 BASE 4K X 4K [25]
- GATAN MULTISCAN [23]
- TVIPS TEMCAM-F415 4K X 4K [21]
- GENERIC CCD [20]
- GENERIC GATAN 4K X 4K [19]
- DIRECT ELECTRON DE-16 4K X 4K [15]
- DIRECT ELECTRON APOLLO 4K X 4K [11]
- TVIPS TEMCAM-F816 8K X 8K [11]
- DECTRIS SINGLA 1K X 1K [10]
- GENERIC GATAN 2K X 2K [10]
- TVIPS TEMCAM-F216 2K X 2K [10]
- GATAN K2 IS 4K X 4K [8]
- DIRECT ELECTRON DE-12 4K X 3K [7]
- GATAN ULTRASCAN 1000 2K X 2K [7]
- DIRECT ELECTRON DE-10 5K X 4K [6]
- DIRECT ELECTRON DE-64 8K X 8K [6]
- FEI EAGLE 2K X 2K [6]
- GATAN ALPINE 2.3K X 3.2K [5]
- GENERIC CCD 2K X 2K [5]
- GENERIC GATAN [5]
- DECTRIS ARINA 0.2K X 0.2K [4]
- GENERIC FILM [4]
- GENERIC TVIPS 4K X 4K [3]
- DECTRIS ELA 1K X 0.5K [2]
- GENERIC IMAGE PLATES [2]
- GENERIC TVIPS [2]
- TVIPS TEMCAM-F224 2K X 2K [2]
- AGFA SCIENTA FILM [1]
EMPIAR Experiment type
- EMDB [8]
- FIB-SEM [1]
- SBF-SEM [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [9]
- MICROGRAPHS - SINGLE FRAME [2]
- TILT SERIES [2]
- RECONSTRUCTED VOLUMES [1]
External links
- PDB [351]
- UniProt [326]
- PDBe-Kb [300]
- AlphaFold DB [274]
- InterPro [271]
- Gene Ontology [252]
- Pfam [237]
- ChEBI [216]
- ChEMBL [196]
- DrugBank [176]
- Complex Portal [86]
- EMPIAR [36]
- EMDB [8]
- SCOP2 [6]
- CATH [3]
Release date: March 4, 2026
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8v9t
Q-score: 0.385
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8v9t
Q-score: 0.385
Shatarupa A, Brown D, Olinares PDB, Chase J, Isiorho E, Chait BT, Jeruzalmi D
Nucleic Acids Res (2025) 53 [ Pubmed: 41312769 DOI: doi:10.1093/nar/gkaf1139 ]
Release date: March 4, 2026
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9dhx
Q-score: 0.555
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9dhx
Q-score: 0.555
Sarkar S, Gebert LFR, MacRae IJ
To Be Published
Release date: March 4, 2026
Resolution: 8.7 Å
EM Method: Subtomogram averaging
Resolution: 8.7 Å
EM Method: Subtomogram averaging
Woldeyes RA, Chiu W
To Be Published
Release date: March 4, 2026
Resolution: 9.1 Å
EM Method: Subtomogram averaging
Resolution: 9.1 Å
EM Method: Subtomogram averaging
Woldeyes RA, Chiu W
To Be Published
Release date: March 4, 2026
Resolution: 9.3 Å
EM Method: Subtomogram averaging
Resolution: 9.3 Å
EM Method: Subtomogram averaging
Woldeyes RA, Chiu W
To Be Published
Release date: March 4, 2026
Resolution: 9.5 Å
EM Method: Subtomogram averaging
Resolution: 9.5 Å
EM Method: Subtomogram averaging
Woldeyes RA, Chiu W
To Be Published
Release date: March 4, 2026
Resolution: 19.5 Å
EM Method: Subtomogram averaging
Resolution: 19.5 Å
EM Method: Subtomogram averaging
Woldeyes RA, Chiu W
To Be Published
Release date: March 4, 2026
Resolution: 18.0 Å
EM Method: Subtomogram averaging
Resolution: 18.0 Å
EM Method: Subtomogram averaging
Woldeyes RA, Chiu W
To Be Published
Release date: March 4, 2026
Resolution: 12.4 Å
EM Method: Subtomogram averaging
Resolution: 12.4 Å
EM Method: Subtomogram averaging
Woldeyes RA, Chiu W
To Be Published
Release date: March 4, 2026
Resolution: 12.4 Å
EM Method: Subtomogram averaging
Resolution: 12.4 Å
EM Method: Subtomogram averaging
Woldeyes RA, Chiu W
To Be Published
Filter By
Current Database
- EMDB [17036]
- EMPIAR [10]
Current status
- REL [17046]
Sample type
- Complex [13463]
- Protein [11064]
- Ligand [6026]
- RNA [1490]
- Virus [1433]
- Sample [1127]
- Cellular component [1109]
- DNA [996]
- Cell [568]
- Other [69]
- Tissue [69]
Organism
- Homo sapiens [5413]
- Synthetic construct [1479]
- Mus musculus [1030]
- Escherichia coli [912]
- Saccharomyces cerevisiae [801]
- Severe acute respiratory syndrome coronavirus [620]
- Escherichia coli [497]
- Bos taurus [389]
- Rattus norvegicus [353]
- Oryctolagus cuniculus [348]
- Human immunodeficiency virus 1 [343]
- Sus scrofa [295]
- Saccharomyces cerevisiae [242]
- Xenopus laevis [198]
- Chlamydomonas reinhardtii [148]
- Lama glama [136]
- Bacillus subtilis [128]
- Enterobacteria phage m13 [124]
- Gallus gallus [122]
- Arabidopsis thaliana [118]
- Trypanosoma brucei [91]
- Mycolicibacterium smegmatis [86]
- Escherichia coli [84]
- Tetrahymena thermophila [80]
- Mycobacterium tuberculosis [75]
- Danio rerio [72]
- Mycoplasma pneumoniae [70]
- Thermus thermophilus [68]
- Enterobacteria phage t4 [65]
- Human herpesvirus 1 [62]
- Drosophila melanogaster [61]
- Macaca mulatta [57]
- Polytomella sp. pringsheim 198.80 [55]
- Chaetomium thermophilum [53]
- Hepatitis b virus [52]
- Staphylococcus aureus [52]
- Influenza a virus [49]
- Spinacia oleracea [48]
- Mycobacterium tuberculosis [47]
- Mycolicibacterium smegmatis [46]
- Schizosaccharomyces pombe [46]
- Trichomonas vaginalis [45]
- Salmonella enterica [44]
- Parengyodontium album [43]
- Plasmodium falciparum [42]
- Pseudomonas aeruginosa [41]
- Torpedo marmorata [40]
- Cricetulus griseus [39]
- Pseudomonas aeruginosa [39]
- Enterovirus d [38]
- Simian virus 40 [37]
- Ovis aries [37]
- Saccharomyces cerevisiae [36]
- Euglena gracilis [36]
- Caenorhabditis elegans [36]
- Staphylococcus phage 812 [35]
- Vibrio cholerae [35]
- Porphyridium purpureum [35]
- Neurospora crassa [35]
- Trypanosoma brucei [35]
- Plasmodium falciparum [33]
- Schizosaccharomyces pombe [33]
- Brome mosaic virus [32]
- Saccharomyces cerevisiae [32]
- Amanita phalloides [32]
- Escherichia virus t7 [31]
- Vicugna pacos [31]
- Caulobacter vibrioides [31]
- Sus scrofa [31]
- Rous sarcoma virus [30]
- Potato virus y [30]
- Human coronavirus hku1 [30]
- Thermoplasma acidophilum [28]
- Enterobacteria phage t4 [28]
- Synechocystis sp. pcc 6803 [27]
- Bacillus subtilis [27]
- Dna molecule [27]
- Severe acute respiratory syndrome coronavirus [27]
- Enterovirus c [26]
- Pseudomonas phage jbd30 [26]
- Toxoplasma gondii [26]
- Equus caballus [25]
- Listeria innocua [24]
- Shigella flexneri [24]
- Vibrio cholerae [24]
- Severe acute respiratory syndrome coronavirus [23]
- Monkeypox virus [22]
- Adeno-associated dependoparvovirus a [22]
- Severe acute respiratory syndrome coronavirus [22]
- Chaetomium thermophilum [22]
- (no species) [21]
- Middle east respiratory syndrome-related coronavirus [21]
- Klebsiella pneumoniae [21]
- Komagataella phaffii [21]
- Escherichia coli [21]
- Vaccinia virus [20]
- Zaire ebolavirus [20]
- Streptococcus thermophilus [20]
- Geobacillus stearothermophilus [20]
- Dickeya dadantii [20]
EM Method
- Single-particle [13855]
- Tomography [1197]
- Subtomogram averaging [1157]
- Helical reconstruction [707]
- Electron Crystallography [120]
Resolution
- < 2Å [207]
- ≥ 2Å and < 3Å [3135]
- ≥ 3Å and < 4Å [6804]
- ≥ 4Å and < 5Å [1828]
- ≥ 5Å and < 6Å [488]
- ≥ 6Å and < 8Å [954]
- ≥ 8Å and < 12Å [957]
- ≥ 12Å and < 16Å [367]
- ≥ 16Å and < 20Å [290]
- ≥ 20Å and < 30Å [696]
- ≥ 30Å [810]
Model molecular weight
- 0-50 kDa [9]
- 50-100 kDa [27]
- 100-250 kDa [101]
- 250-500 kDa [95]
- 500-1000 kDa [57]
- 1-2 MDa [28]
- 2-5 MDa [24]
- 5-10 MDa [4]
- > 10 MDa [4]
Release Date
- 2026 [480]
- 2025 [3412]
- 2024 [2885]
- 2023 [2133]
- 2022 [1765]
- 2021 [1492]
- 2020 [1381]
- 2019 [920]
- 2018 [737]
- 2017 [410]
- 2016 [553]
- 2015 [299]
- 2014 [146]
- 2013 [133]
- 2012 [52]
- 2011 [42]
- 2010 [41]
- 2009 [42]
- 2008 [24]
- 2007 [41]
- 2006 [27]
- 2005 [18]
- 2004 [11]
- 2003 [1]
- 2002 [1]
Author by name
- Liu J [771]
- Ren G [692]
- Zhang M [579]
- Zhang Y [425]
- Wang S [392]
- Wu H [383]
- Liu Y [371]
- Zhang X [370]
- Zhou ZH [369]
- Hu Z [362]
- Gang O [343]
- Zhou L [325]
- Ward AB [321]
- Wang J [278]
- Wang Y [270]
- Lyumkis D [266]
- Liu S [264]
- Li Y [261]
- Zhang Z [232]
- Gao Y [219]
- Andersen ES [212]
- Geary C [206]
- Zhang L [205]
- Mcrae EKS [202]
- Baumeister W [197]
- Li S [195]
- Wang H [195]
- Wang L [192]
- Williamson JR [190]
- Yang X [190]
- Marks AR [188]
- Skiniotis G [186]
- Briggs JAG [185]
- Miotto MC [185]
- Plevka P [185]
- Zhang K [185]
- Fuzik T [170]
- Li Z [167]
- Raunser S [165]
- Yang Y [162]
- Shi Y [160]
- Dridi H [159]
- Reiken S [159]
- Panova O [158]
- Tchagou C [158]
- Weninger G [158]
- Zhang S [155]
- Brown A [154]
- Rubinstein JL [154]
- Wu M [154]
- Kobilka BK [152]
- Wang X [151]
- Cramer P [149]
- Kato T [148]
- Zhou Q [148]
- Lander GC [147]
- Li X [147]
- Gmeiner P [145]
- Hu Y [145]
- Chiu W [144]
- Hildebrand PW [144]
- Hilger D [144]
- Seven AB [144]
- Zhang R [143]
- Papasergi-scott MM [142]
- Xia X [142]
- Yuan Q [142]
- Greber BJ [141]
- Wang Z [141]
- Amunts A [140]
- He F [140]
- Eskici G [139]
- Li J [139]
- Batebi H [138]
- Casiraghi M [138]
- Maul L [138]
- Perez-hernandez G [138]
- Dong X [137]
- Wronska A [137]
- Rossmann MG [135]
- Zhang YY [135]
- Gonen T [132]
- Kotecha A [132]
- Chen Z [131]
- Lei D [130]
- Liu H [128]
- Zhang J [126]
- Itoh Y [125]
- Ozorowski G [125]
- Sheng K [125]
- Zhu Y [125]
- Rabuck-gibbons JN [120]
- Wu J [120]
- Zhou J [120]
- Chen J [119]
- Cottrell CA [119]
- Guo H [119]
- Li W [119]
- Plitzko JM [119]
- Su H [119]
Author by ORCID
- Kwong PD [7]
- Rubinstein JL [6]
- Cottrell CA [5]
- Skiniotis G [5]
- Guo H [4]
- Southworth DR [4]
- Ward AB [4]
- Greber BJ [4]
- Stahlberg H [4]
- Fuzik T [4]
- Tse E [4]
- Zhou T [4]
- Liu B [4]
- Clarke OB [4]
- Plevka P [4]
- Blaza JN [3]
- Kobilka BK [3]
- Zhang K [3]
- Noble AJ [3]
- Yang J [3]
- Raunser S [3]
- Chai P [3]
- Kim K [3]
- Brown A [3]
- Crowe JE [3]
- Deville C [3]
- Mer G [3]
- Kuhlbrandt W [3]
- Radford SE [3]
- Markus SM [3]
- Ranson NA [3]
- Kotecha A [3]
- Ramakrishnan V [3]
- Gatsogiannis C [3]
- Amunts A [3]
- Botuyan MV [3]
- Jakobi AJ [3]
- Cushing VI [3]
- Wang Y [3]
- Locher KP [3]
- Cali T [3]
- Cerutti G [3]
- Bukau B [3]
- Mills DJ [3]
- Johnston JD [3]
- Orlova EV [3]
- Vallese F [3]
- Biggin PC [2]
- Hilger D [2]
- Hamdan SM [2]
- Yates 3Rd Jr [2]
- Wilkinson M [2]
- Schneider C [2]
- Montgomery MG [2]
- Sachse C [2]
- Murphy BJ [2]
- Kaushal PS [2]
- Sampson JM [2]
- Diedrich JK [2]
- Koh AF [2]
- Burton DR [2]
- Schiffner T [2]
- Podobnik M [2]
- Behrmann E [2]
- Ekemezie CL [2]
- Hill CH [2]
- De Martin Garrido N [2]
- Harrison SC [2]
- Ni T [2]
- Prumbaum D [2]
- Guthmiller JJ [2]
- Itoh Y [2]
- Glatt S [2]
- Walker JE [2]
- Li H [2]
- Atanassov I [2]
- Riegelhaupt PM [2]
- Hirst J [2]
- Lin J [2]
- Sergiev P [2]
- Murciano B [2]
- Williams DR [2]
- Wright JJ [2]
- Pinto JR [2]
- Armache JP [2]
- Xia X [2]
- Tehseen M [2]
- Doyle LA [2]
- Tonggu L [2]
- Luque D [2]
- Wang W [2]
- Rosenthal PB [2]
- Ilangovan A [2]
- Nygaard R [2]
- Rybak MY [2]
- Schwartz CL [2]
- Batebi H [2]
- Rebowski G [2]
- Ashraf KU [2]
- Brown CR [2]
Journal
- NAT COMMUN [3372]
- NATURE [1647]
- TO BE PUBLISHED [1536]
- PNAS [1126]
- SCIENCE [1048]
- NAT STRUCT MOL BIOL [1036]
- BIORXIV [937]
- ELIFE [633]
- CELL [610]
- SCI ADV [584]
- STRUCTURE [482]
- MOL CELL [421]
- NUCLEIC ACIDS RES [293]
- CELL REP [237]
- J VIROL [222]
- COMMUN BIOL [214]
- EMBO J [207]
- ACTA CRYSTALLOGR D STRUCT BIOL [162]
- J MOL BIOL [147]
- J STRUCT BIOL [139]
- PLOS PATHOG [136]
- J BIOL CHEM [128]
- CELL RES [124]
- NAT MICROBIOL [116]
- NAT CHEM BIOL [113]
- NAT METHODS [96]
- SCI REP [81]
- PROTEIN SCI [72]
- J CELL BIOL [70]
- CELL DISCOV [58]
- MBIO [58]
- J STRUCT BIOL X [56]
- IMMUNITY [53]
- FRONT ENDOCRINOL [51]
- J CLIN INV [50]
- PLOS BIOL [50]
- NAT PLANTS [47]
- EMBO REP [43]
- COMMUN CHEM [42]
- CELL HOST MICROBE [40]
- IUCRJ [39]
- LIFE SCI ALLIANCE [39]
- MOL BIOL CELL [38]
- J AM CHEM SOC [37]
- ACS NANO [36]
- NAT NANOTECHNOL [35]
- DEV CELL [34]
- ISCIENCE [34]
- INT J MOL SCI [31]
- NPJ VACCINES [30]
- NAT CATAL [26]
- VIROLOGY [26]
- VIRUSES [24]
- SCI TRANSL MED [23]
- BIOMOLECULES [22]
- FEBS LETT [22]
- PLOS ONE [22]
- RES SQ [22]
- BIOCHEMISTRY [21]
- CURR BIOL [21]
- J.MOL.CELL.CARDIOL. [21]
- NAT MATER [21]
- NEURON [21]
- BLOOD [20]
- INT J BIOL MACROMOL [20]
- GENES DEV [19]
- J MED CHEM [19]
- ACS CENT SCI [18]
- ADV SCI [18]
- ANGEW CHEM INT ED ENGL [16]
- MOL PHARMACOL [16]
- PROTEIN CELL [16]
- MOL MICROBIOL [15]
- PNAS NEXUS [15]
- RNA [14]
- SIGNAL TRANSDUCT TARGET THER [14]
- J EXP MED [13]
- ACTA NEUROPATHOL [12]
- BIOCHEM J [12]
- FRONT IMMUNOL [12]
- J LIPID RES [12]
- NAT BIOTECHNOL [12]
- NAT CELL BIOL [12]
- ACS CHEM BIOL [11]
- BIOCHEM BIOPHYS RES COMMUN [11]
- CELL REP PHYS SCI [10]
- J BACTERIOL [10]
- J CELL SCI [9]
- MICROLIFE [9]
- MICROORGANISMS [9]
- BIOPHYS J [8]
- FEBS J [8]
- FEBS OPEN BIO [8]
- FRONT MOL BIOSCI [8]
- MOLECULES [8]
- OPEN BIOL [8]
- PHILOS TRANS R SOC LOND, B, BIOL SCI [8]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [7]
- COMMUNICATIONS CHEMISTRY [7]
- FASEB J [7]
Software
- RELION [7003]
- CRYOSPARC [6420]
- CTFFIND [1455]
- GCTF [1059]
- IMOD [538]
- IPET [443]
- TOMOCTF [379]
- WARP [342]
- FREALIGN [265]
- DYNAMO [202]
- CISTEM [188]
- SPIDER [158]
- CHIMERA [157]
- EMAN2 [137]
- EMAN [135]
- COOT [132]
- CRYOLO [114]
- PHENIX [103]
- PEET [100]
- MATLAB [99]
- JSPR [86]
- AV3 [76]
- PYTOM [75]
- UCSF CHIMERAX [74]
- SPHIRE [69]
- NOVACTF [63]
- UCSF CHIMERA [61]
- TOM TOOLBOX [60]
- XMIPP [55]
- CTFPHASEFLIP [53]
- ETOMO [45]
- STOPGAP [39]
- IMAGIC [37]
- TOM [36]
- AIMLESS [32]
- AUTO3DEM [32]
- CTFFIND3 [29]
- APPION [28]
- J3DR [22]
- SPRING [22]
- SIMPLE [21]
- BSOFT [20]
- CTFFIND3, RELION [20]
- CTFTILT [20]
- EMFIT [20]
- JALIGN [20]
- PRIISM/IVE [19]
- TOMO3D [18]
- EM3DR2 [17]
- IHRSR [17]
- ISOLDE [17]
- SUBTOM [17]
- CTFFIND4 [16]
- M [16]
- UNBLUR, CTFFIND4, FREALIGN [16]
- COMET [15]
- IMIRS [15]
- MRC [15]
- SCIPION [15]
- EMAN1 [14]
- EMCLARITY [14]
- CRYODRGN [13]
- MDFF [13]
- SITUS [13]
- FREALIX [12]
- REFMAC [12]
- CHIMERA, COOT [11]
- CHIMERA, MDFF [11]
- CHIMERA, SITUS [11]
- SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
- SPARX [11]
- AMIRA [10]
- EMAN2, RELION [10]
- EMAN2, RELION, 1.3 [10]
- FOCUS [10]
- EMAN1, FREALIGN [9]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
- O [9]
- TOM, AV3 [9]
- EMAN, EMAN2, MPSA [8]
- EMIRA [8]
- JSPR, EMAN, EMAN2 [8]
- JSPR, EMAN2, EMAN [8]
- RELION, FREALIGN [8]
- URO [8]
- AMIRAFPM [7]
- EMAN2, IMAGIC, RELION-1.3 [7]
- EMAN2, SPIDER, XMIPP [7]
- I3 [7]
- IMOD, TOM, AV3 [7]
- PFT2, EM3DR2, POR, P3DR [7]
- PHASER [7]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [7]
- SPIDER, TOM_TOOLBOX [7]
- ARETOMO [6]
- AV3, TOM, PYTOM [6]
- CHIMERA, ROSETTA, PHENIX, COOT [6]
- CTFFIND3, EMAN2, RELION [6]
- EMAN, FREALIGN [6]
- EMAN2, SPIDER, BESPOKE-2D-ALIGNMENT, BESPOKE-X-AND-Y-SHIFTING [6]
Microscope
- FEI TITAN KRIOS [11227]
- TFS KRIOS [3277]
- FEI TALOS ARCTICA [744]
- TFS GLACIOS [390]
- FEI TECNAI F20 [306]
- ZEISS LIBRA120PLUS [222]
- FEI TITAN [164]
- FEI POLARA 300 [81]
- FEI TECNAI ARCTICA [77]
- TFS TALOS [68]
- JEOL 2200FS [67]
- FEI TECNAI F30 [59]
- FEI TECNAI 20 [53]
- FEI/PHILIPS CM300FEG/T [42]
- FEI TECNAI 12 [39]
- FEI/PHILIPS CM200FEG [35]
- JEOL 2010F [30]
- TFS TALOS F200C [24]
- JEOL 3200FS [18]
- JEOL 2100F [16]
- FEI TECNAI SPIRIT [15]
- JEOL 3100FFC [14]
- FEI/PHILIPS CM120T [13]
- JEOL 1400/HR YPS FEG [10]
- JEOL CRYO ARM 300 [9]
- JEOL 3100FEF [7]
- JEOL 3200FSC [6]
- JEOL 4000EX [6]
- JEOL 2100 [5]
- FEI/PHILIPS CM200T [4]
- FEI/PHILIPS CM300FEG/HE [4]
- JEOL 2200FSC [4]
- JEOL 3000SFF [4]
- OTHER [4]
- FEI TECNAI 10 [3]
- JEOL 1200EXII [2]
- JEOL 1230 [2]
- JEOL KYOTO-3000SFF [2]
- FEI TECNAI SPHERA [1]
- FEI/PHILIPS CM12 [1]
- FEI/PHILIPS CM200FEG/ST [1]
- FEI/PHILIPS EM400 [1]
- FEI/PHILIPS EM420 [1]
- HITACHI EF2000 [1]
- HITACHI H-9500SD [1]
- JEOL 1400 [1]
- JEOL 2010HC [1]
- TFS TITAN THEMIS [1]
Electron Source
- FIELD EMISSION GUN [16669]
- LAB6 [337]
- TUNGSTEN HAIRPIN [20]
- OTHER [11]
Film or detector model
- GATAN K3 BIOQUANTUM 6K X 4K [4062]
- GATAN K2 SUMMIT 4K X 4K [3690]
- GATAN K3 6K X 4K [3184]
- FEI FALCON IV 4K X 4K [1453]
- FEI FALCON III 4K X 4K [1218]
- FEI FALCON II 4K X 4K [731]
- GATAN K2 QUANTUM 4K X 4K [688]
- TFS FALCON 4I 4K X 4K [471]
- GATAN ULTRASCAN 4000 4K X 4K [416]
- KODAK SO-163 FILM [247]
- GATAN K2 4K X 4K [139]
- GATAN K3 BIOCONTINUUM 6K X 4K [123]
- TVIPS TEMCAM-F416 4K X 4K [92]
- OTHER [79]
- FEI EAGLE 4K X 4K [69]
- FEI CETA 4K X 4K [62]
- DIRECT ELECTRON DE-20 5K X 3K [55]
- FEI FALCON I 4K X 4K [35]
- GATAN K2 BASE 4K X 4K [25]
- GATAN MULTISCAN [23]
- TVIPS TEMCAM-F415 4K X 4K [21]
- GENERIC CCD [20]
- GENERIC GATAN 4K X 4K [19]
- DIRECT ELECTRON DE-16 4K X 4K [15]
- DIRECT ELECTRON APOLLO 4K X 4K [11]
- TVIPS TEMCAM-F816 8K X 8K [11]
- DECTRIS SINGLA 1K X 1K [10]
- GENERIC GATAN 2K X 2K [10]
- TVIPS TEMCAM-F216 2K X 2K [10]
- GATAN K2 IS 4K X 4K [8]
- DIRECT ELECTRON DE-12 4K X 3K [7]
- GATAN ULTRASCAN 1000 2K X 2K [7]
- DIRECT ELECTRON DE-10 5K X 4K [6]
- DIRECT ELECTRON DE-64 8K X 8K [6]
- FEI EAGLE 2K X 2K [6]
- GATAN ALPINE 2.3K X 3.2K [5]
- GENERIC CCD 2K X 2K [5]
- GENERIC GATAN [5]
- DECTRIS ARINA 0.2K X 0.2K [4]
- GENERIC FILM [4]
- GENERIC TVIPS 4K X 4K [3]
- DECTRIS ELA 1K X 0.5K [2]
- GENERIC IMAGE PLATES [2]
- GENERIC TVIPS [2]
- TVIPS TEMCAM-F224 2K X 2K [2]
- AGFA SCIENTA FILM [1]
EMPIAR Experiment type
- EMDB [8]
- FIB-SEM [1]
- SBF-SEM [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [9]
- MICROGRAPHS - SINGLE FRAME [2]
- TILT SERIES [2]
- RECONSTRUCTED VOLUMES [1]
External links
- PDB [351]
- UniProt [326]
- PDBe-Kb [300]
- AlphaFold DB [274]
- InterPro [271]
- Gene Ontology [252]
- Pfam [237]
- ChEBI [216]
- ChEMBL [196]
- DrugBank [176]
- Complex Portal [86]
- EMPIAR [36]
- EMDB [8]
- SCOP2 [6]
- CATH [3]