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Current Database
- EMDB [7892]
- EMPIAR [53]
Current status
- REL [7945]
Sample type
- Complex [6819]
- Protein [5855]
- Ligand [3806]
- RNA [668]
- DNA [541]
- Cellular component [452]
- Cell [380]
- Virus [188]
- Sample [92]
- Tissue [50]
- Other [30]
- Em label [1]
Organism
- Homo sapiens [3364]
- Mus musculus [666]
- Synthetic construct [501]
- Escherichia coli [481]
- Rattus norvegicus [309]
- Saccharomyces cerevisiae [268]
- Severe acute respiratory syndrome coronavirus [224]
- Bos taurus [198]
- Oryctolagus cuniculus [170]
- Escherichia coli [160]
- Lama glama [154]
- Human immunodeficiency virus 1 [138]
- Saccharomyces cerevisiae [83]
- Sus scrofa [79]
- Arabidopsis thaliana [72]
- Geobacillus stearothermophilus [64]
- Drosophila melanogaster [61]
- Macaca mulatta [59]
- Mycolicibacterium smegmatis [58]
- Xenopus laevis [50]
- Gallus gallus [45]
- Mycobacterium tuberculosis [41]
- Influenza a virus [37]
- Vicugna pacos [36]
- Bacillus subtilis [35]
- Schizosaccharomyces pombe [35]
- Aequorea victoria [34]
- Cricetulus griseus [33]
- Caenorhabditis elegans [33]
- Mycobacterium tuberculosis [32]
- Human cytomegalovirus [30]
- Simian virus 40 [30]
- Pseudomonas aeruginosa [30]
- Human herpesvirus 1 [29]
- Salmonella enterica [29]
- Mycoplasma pneumoniae [28]
- Plasmodium falciparum [25]
- Danio rerio [25]
- Listeria innocua [24]
- Escherichia coli [24]
- Saccharomyces cerevisiae [24]
- Escherichia coli [24]
- (no species) [23]
- Mycolicibacterium thermoresistibile [21]
- Streptococcus thermophilus [20]
- Human coronavirus hku1 [20]
- Macrocystis pyrifera [20]
- Acetivibrio thermocellus [19]
- Caulobacter vibrioides [19]
- Salmonella enterica [19]
- Enterobacteria phage t4 [18]
- Staphylococcus aureus [18]
- Pseudomonas aeruginosa [18]
- Enterobacteria phage t4 [17]
- Betacoronavirus 1 [17]
- Escherichia coli [17]
- Pseudoalteromonas sp. s983 [16]
- Vibrio cholerae [16]
- (no species) [16]
- Streptomyces lasalocidi [15]
- Scytonema hofmannii [15]
- Trypanosoma brucei [15]
- Hantaan orthohantavirus [14]
- Sulfolobus acidocaldarius [14]
- Thermus thermophilus [14]
- Dictyostelium discoideum [14]
- Hepacivirus c [13]
- Bacillus subtilis [13]
- Candida albicans [13]
- Saccharomyces cerevisiae [12]
- Thermus thermophilus [12]
- Tetrahymena thermophila [12]
- Pyrobaculum calidifontis [12]
- Neovison vison [12]
- Plasmodium falciparum [12]
- Aquifex aeolicus [12]
- Fusarium vanettenii [12]
- Strongylocentrotus purpuratus [12]
- (no species) [11]
- Adeno-associated dependoparvovirus a [11]
- Pseudomonas phage phi6 [11]
- Human immunodeficiency virus 1 [11]
- Methanothermobacter thermautotrophicus [11]
- Spirochaeta thermophila [11]
- Aquifex aeolicus [11]
- Entamoeba histolytica [11]
- Chlamydomonas reinhardtii [11]
- Serratia entomophila [11]
- Tetrahymena thermophila [11]
- Enterococcus italicus [11]
- Canis lupus [11]
- Escherichia virus t7 [10]
- Synechocystis sp. pcc 6803 [10]
- Measles morbillivirus [10]
- Caulobacter vibrioides [10]
- Retbasiphovirus hftv1 [10]
- Azotobacter vinelandii [10]
- Mycobacteroides abscessus [10]
- Schizosaccharomyces pombe [10]
- Plasmodium falciparum [10]
EM Method
- Single-particle [6956]
- Subtomogram averaging [444]
- Tomography [263]
- Helical reconstruction [227]
- Electron Crystallography [2]
Resolution
- < 2Å [141]
- ≥ 2Å and < 3Å [2118]
- ≥ 3Å and < 4Å [3563]
- ≥ 4Å and < 5Å [756]
- ≥ 5Å and < 6Å [141]
- ≥ 6Å and < 8Å [313]
- ≥ 8Å and < 12Å [221]
- ≥ 12Å and < 16Å [50]
- ≥ 16Å and < 20Å [54]
- ≥ 20Å and < 30Å [110]
- ≥ 30Å [158]
Model molecular weight
- 0-50 kDa [69]
- 50-100 kDa [427]
- 100-250 kDa [1947]
- 250-500 kDa [1525]
- 500-1000 kDa [642]
- 1-2 MDa [262]
- 2-5 MDa [228]
- 5-10 MDa [31]
- > 10 MDa [21]
Release Date
- 2026 [975]
- 2025 [1636]
- 2024 [1477]
- 2023 [1120]
- 2022 [865]
- 2021 [715]
- 2020 [474]
- 2019 [206]
- 2018 [203]
- 2017 [111]
- 2016 [92]
- 2015 [25]
- 2014 [24]
- 2013 [2]
- 2012 [4]
- 2010 [5]
- 2009 [1]
- 2007 [1]
- 2004 [1]
- 2003 [8]
Author by name
- Zhang Z [176]
- Ward AB [161]
- Klinge S [160]
- Liu Y [159]
- Vanden Broeck A [156]
- Kobilka BK [150]
- Zhang Y [148]
- Skiniotis G [141]
- Lander GC [136]
- Gao Y [135]
- Rubinstein JL [134]
- Sobolevsky AI [131]
- Hirst J [127]
- Lyumkis D [125]
- Wang X [121]
- Panova O [119]
- Gmeiner P [114]
- Greber BJ [113]
- Li Y [113]
- Frank J [111]
- Hilger D [111]
- Papasergi-scott MM [111]
- Seven AB [110]
- Eskici G [106]
- Hildebrand PW [106]
- Batebi H [104]
- Casiraghi M [104]
- He F [104]
- Maul L [104]
- Perez-hernandez G [104]
- Kotecha A [103]
- Wang Y [100]
- Blaza JN [98]
- Zhang X [97]
- Bridges HR [94]
- Wang J [94]
- Beck M [91]
- Chen J [90]
- Feng J [89]
- Chung I [88]
- Yin Z [87]
- Paulino C [85]
- Li Z [82]
- Li H [81]
- Cushing VI [80]
- Yelshanskaya MV [80]
- Gati C [78]
- Zhang J [77]
- Chen X [76]
- Clarke OB [74]
- Gold VAM [73]
- Han GW [73]
- Li J [73]
- Savva CG [72]
- Aricescu AR [71]
- Tan YZ [71]
- Mahamid J [70]
- Vinothkumar KR [70]
- Xu Y [70]
- Hite RK [69]
- Hummer G [69]
- Park J [69]
- Potter CS [69]
- Carragher B [68]
- Koh AF [68]
- Ali S [67]
- Cheng Y [67]
- Daum B [67]
- Wu M [67]
- Borgnia MJ [65]
- Khan S [65]
- Pollak MN [65]
- Antanasijevic A [64]
- Williamson JR [63]
- Gouaux E [62]
- Guo H [62]
- Hendrickson WA [62]
- Mclaren M [62]
- Bahl AK [61]
- Barbazanges M [61]
- Barrett AGM [61]
- Bondke A [61]
- Jurgaityte K [61]
- Kroll SHB [61]
- Scheiper B [61]
- Tyson AS [61]
- Yang X [61]
- Darst SA [60]
- Liu J [60]
- Rheinberger J [59]
- Baumeister W [58]
- Nadezhdin KD [58]
- Wang L [58]
- Wang YX [58]
- Degenhardt MFS [57]
- Gangwar SP [56]
- Zhang L [56]
- Brown ZP [55]
- Sewall LM [55]
- Stagno J [55]
Author by ORCID
- Klinge S [160]
- Vanden Broeck A [156]
- Kobilka BK [141]
- Skiniotis G [128]
- Ward AB [123]
- Rubinstein JL [120]
- Lander GC [113]
- Gmeiner P [112]
- Gao Y [111]
- Hirst J [109]
- Papasergi-scott MM [109]
- Hilger D [108]
- Greber BJ [107]
- Batebi H [104]
- Panova O [104]
- He F [104]
- Perez-hernandez G [104]
- Hildebrand PW [104]
- Kotecha A [99]
- Lyumkis D [99]
- Sobolevsky AI [97]
- Blaza JN [91]
- Bridges HR [87]
- Feng J [82]
- Chung I [81]
- Paulino C [80]
- Yin Z [79]
- Cushing VI [76]
- Tan YZ [69]
- Hummer G [69]
- Hite RK [68]
- Ali S [67]
- Aricescu AR [67]
- Frank J [66]
- Pollak MN [65]
- Koh AF [64]
- Mahamid J [64]
- Gati C [64]
- Gold VAM [62]
- Williamson JR [62]
- Barbazanges M [61]
- Barrett AGM [61]
- Jurgaityte K [61]
- Daum B [60]
- Cheng Y [59]
- Mclaren M [58]
- Wang YX [57]
- Gangwar SP [56]
- Degenhardt MFS [56]
- Stagno J [55]
- Brown ZP [55]
- Nadezhdin KD [54]
- Fromme JC [54]
- Rheinberger J [54]
- Gagnon MG [53]
- Bagde SR [52]
- Malinauskas T [52]
- Guo H [51]
- Neuberger A [50]
- Des Georges A [50]
- Lee SY [49]
- Hellen CUT [49]
- Pestova TV [49]
- Kreysing JP [48]
- Borgnia MJ [47]
- Nimigean CM [46]
- Grotjahn DA [44]
- Ranjbar M [44]
- Beck M [44]
- Shan Z [44]
- Zhang Z [44]
- Crispin M [43]
- Cottrell CA [43]
- Rice WJ [43]
- Mihaylov DB [43]
- Lima CD [43]
- Hamdan SM [42]
- Rabuck-gibbons JN [42]
- Park E [42]
- Kwong PD [42]
- Copps J [42]
- Isupov MN [41]
- Nogales E [41]
- Yamashita K [41]
- Hallberg BM [41]
- Kurnikova MG [41]
- Grunewald K [40]
- Ozorowski G [40]
- Mclellan JS [40]
- Crotty S [39]
- Wilfling F [39]
- Darst SA [39]
- Burton DR [38]
- Baumeister W [38]
- Bai XC [38]
- Cate JHD [37]
- Li H [37]
- Sosa H [37]
- Zhou ZH [37]
- Gouaux E [37]
Journal
- NAT COMMUN [1572]
- NATURE [791]
- TO BE PUBLISHED [658]
- BIORXIV [625]
- SCIENCE [565]
- NAT STRUCT MOL BIOL [515]
- PNAS [464]
- SCI ADV [363]
- ELIFE [313]
- CELL [304]
- STRUCTURE [209]
- MOL CELL [183]
- NUCLEIC ACIDS RES [157]
- EMBO J [141]
- COMMUN BIOL [92]
- CELL REP [90]
- ACTA CRYSTALLOGR D STRUCT BIOL [81]
- NAT MICROBIOL [69]
- NAT CHEM BIOL [66]
- J BIOL CHEM [65]
- NAT METHODS [65]
- CELL RES [46]
- J STRUCT BIOL [46]
- PROTEIN SCI [44]
- EMBO REP [42]
- J MOL BIOL [35]
- J CELL BIOL [34]
- J STRUCT BIOL X [34]
- NAT CELL BIOL [31]
- NEURON [26]
- IMMUNITY [25]
- SCI REP [24]
- CELL DISCOV [22]
- J AM CHEM SOC [22]
- IUCRJ [21]
- J VIROL [21]
- J MED CHEM [18]
- MBIO [18]
- PLOS BIOL [18]
- J CELL SCI [15]
- INT J BIOL MACROMOL [14]
- LIFE SCI ALLIANCE [13]
- BIOCHEMISTRY [12]
- CELL HOST MICROBE [12]
- PLOS ONE [12]
- PLOS PATHOG [12]
- ANGEW CHEM INT ED ENGL [11]
- BLOOD [11]
- NAT PLANTS [10]
- ACS CENT SCI [9]
- NAT IMMUNOL [9]
- PROTEIN CELL [9]
- SIGNAL TRANSDUCT TARGET THER [9]
- ACS CHEM BIOL [8]
- ADV SCI [8]
- DEV CELL [8]
- ISCIENCE [8]
- J GEN VIROL [8]
- ACS BIO MED CHEM AU [7]
- FEBS LETT [7]
- MOL MICROBIOL [7]
- NAT CATAL [7]
- BIOCHEM J [6]
- J GEN PHYSIOL [6]
- MOL BIOL CELL [6]
- MOL PLANT [6]
- SCI SIGNAL [6]
- ACS NANO [5]
- BIOCHEM BIOPHYS RES COMMUN [5]
- BIOPHYS J [5]
- FEBS J [5]
- GENOME BIOL EVOL [5]
- MOL.BIOL.EVOL. [5]
- NPJ VACCINES [5]
- RES [5]
- RES SQ [5]
- RNA [5]
- SCI TRANSL MED [5]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [4]
- ACTA NEUROPATHOL [4]
- ADV MATER [4]
- BIOCHIM BIOPHYS ACTA [4]
- BIOCHIM BIOPHYS ACTA BIOENERG [4]
- CANCER DISCOV [4]
- J IMMUNOL. [4]
- MICROSCOPY [4]
- NAT BIOTECHNOL [4]
- OPEN BIOL [4]
- PLANT COMMUN. [4]
- SCI IMMUNOL [4]
- ULTRAMICROSCOPY [4]
- ACS MED.CHEM.LETT. [3]
- AM J KIDNEY DIS [3]
- ANNU REV BIOPHYS [3]
- CURR BIOL [3]
- CURR TOP DEV BIOL [3]
- GENES DEV [3]
- J EXP MED [3]
- J MOL CELL BIOL [3]
- J PHARMACOL EXP THER [3]
Software
- CRYOSPARC [3916]
- RELION [2677]
- CTFFIND [535]
- IMOD [241]
- GCTF [236]
- WARP [156]
- CISTEM [110]
- COOT [104]
- FREALIGN [104]
- UCSF CHIMERAX [65]
- DYNAMO [55]
- NOVASTA [54]
- PEET [51]
- EMAN2 [39]
- ETOMO [38]
- UCSF CHIMERA [38]
- PHENIX [29]
- PYTOM [25]
- NOVACTF [23]
- XMIPP [20]
- APPION [19]
- CTFTILT [18]
- CRYOLO [16]
- M [16]
- MOTIONCORR2 [15]
- ISOLDE [13]
- CTFPHASEFLIP [12]
- SIMPLE [12]
- SPIDER, FREALIGN [12]
- CHIMERA [10]
- CTFFIND4 [9]
- MATLAB [9]
- PRIISM/IVE [9]
- TOMO3D [9]
- EMAN2, RELION [7]
- TOM TOOLBOX [7]
- TOM, AV3 [7]
- ARETOMO [6]
- EMREADY [6]
- PHOELIX, SUPRIM [6]
- SPHIRE [6]
- BSOFT, EMAN2, RELION, SPIDER, IHRSR [5]
- EMAN [4]
- EMCLARITY [4]
- ETOMO, IMOD [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- ETOMO, FROM, IMOD, SOFTWARE [3]
- PROTOMO, IMOD [3]
- SCIPION [3]
- SITUS [3]
- SPIDER, EMAN, IHRSR, BSOFT [3]
- TOMOALIGN [3]
- FLEX-EM [2]
- I3 [2]
- NAMD [2]
- PHOELIX [2]
- SPIDER [2]
- STOPGAP [2]
- SUBTOM [2]
- TOM [2]
- CHIMERA, IMODFIT [1]
- CHIMERA, MDFF [1]
- CHIMERA, VMD, MDFF [1]
- CRYOSPAR [1]
- CTFFIND3 [1]
- CTFFIND3, EMAN, BOXER, IMAGIC, FPM, RELION [1]
- CTFFIND3, EMAN, BOXER, IMAGIC, FPM, SPIDER [1]
- E2BOXER [1]
- EMAN2, SPARX, RELION [1]
- IMAGIC, FREALIGN [1]
- IMAGIC, SPIDER [1]
- IMOD, AV3, TOM, DYNAMO [1]
- IMOD, PEET, CTFFIND3D, EMAN, BOXER , FPM, SPIDER [1]
- IMOD, TOMO3D [1]
- IMOD, TOMO3D, RELION [1]
- JSPR [1]
- JSPR, EMAN2 [1]
- JSPR, EMAN2, EMAN [1]
- LEGINON [1]
- MD [1]
- PYTO [1]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [1]
- REFMAC [1]
- SERIALEM [1]
- SPARX [1]
- SPRING [1]
- TOMOCTF [1]
- TOPAZ [1]
- XMIPP, RELION [1]
Microscope
- FEI TITAN KRIOS [4093]
- TFS KRIOS [2429]
- FEI TALOS ARCTICA [543]
- TFS GLACIOS [339]
- FEI POLARA 300 [94]
- JEOL CRYO ARM 300 [74]
- FEI TECNAI F30 [63]
- FEI TITAN [52]
- FEI TECNAI ARCTICA [42]
- TFS TALOS [38]
- FEI TECNAI F20 [37]
- FEI TECNAI 20 [17]
- JEOL 2200FS [12]
- FEI/PHILIPS CM300FEG/T [9]
- FEI/PHILIPS CM120T [8]
- JEOL 3200FSC [8]
- JEOL 1400/HR YPS FEG [7]
- JEOL CRYO ARM 200 [7]
- TFS TITAN THEMIS [5]
- FEI TECNAI 12 [3]
- JEOL 2200FSC [3]
- FEI/PHILIPS CM200FEG [2]
- FEI/PHILIPS CM200FEG/ST [2]
- FEI/PHILIPS CM300FEG/HE [2]
- JEOL 2100 [2]
- TFS TALOS F200C [2]
- TFS TUNDRA [2]
- FEI TECNAI SPIRIT [1]
- JEOL 2100F [1]
- SHUIMU TOTEM 300S [1]
Electron Source
- FIELD EMISSION GUN [7838]
- LAB6 [26]
- OTHER [22]
- TUNGSTEN HAIRPIN [6]
Film or detector model
- GATAN K3 6K X 4K [2208]
- GATAN K3 BIOQUANTUM 6K X 4K [1895]
- GATAN K2 SUMMIT 4K X 4K [1494]
- FEI FALCON IV 4K X 4K [982]
- TFS FALCON 4I 4K X 4K [442]
- FEI FALCON III 4K X 4K [380]
- GATAN K2 QUANTUM 4K X 4K [207]
- GATAN K3 BIOCONTINUUM 6K X 4K [77]
- FEI FALCON II 4K X 4K [38]
- GATAN ULTRASCAN 4000 4K X 4K [27]
- OTHER [27]
- KODAK SO-163 FILM [24]
- GATAN K2 BASE 4K X 4K [22]
- GATAN K2 4K X 4K [13]
- DIRECT ELECTRON DE-20 5K X 3K [12]
- DIRECT ELECTRON APOLLO 4K X 4K [10]
- GATAN MULTISCAN [10]
- DIRECT ELECTRON DE-10 5K X 4K [9]
- FEI FALCON I 4K X 4K [9]
- DECTRIS SINGLA 1K X 1K [8]
- TVIPS TEMCAM-F416 4K X 4K [5]
- DIRECT ELECTRON DE-64 8K X 8K [4]
- GATAN ULTRASCAN 1000 2K X 2K [4]
- DIRECT ELECTRON DE-16 4K X 4K [3]
- FEI CETA 4K X 4K [3]
- FEI EAGLE 4K X 4K [3]
- TVIPS TEMCAM-F224 2K X 2K [3]
- GATAN ALPINE 2.3K X 3.2K [2]
- GATAN K2 IS 4K X 4K [2]
- DECTRIS ELA 1K X 0.5K [1]
- GENERIC GATAN 4K X 4K [1]
- TVIPS TEMCAM-F415 4K X 4K [1]
EMPIAR Experiment type
- EMDB [50]
- SSET [2]
- FIB-SEM [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [35]
- TILT SERIES [16]
- RECONSTRUCTED VOLUMES [8]
- MICROGRAPHS - SINGLE FRAME [5]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [1]
- STITCHED MAPS [1]
External links
- PDB [7832]
- UniProt [5504]
- PDBe-Kb [5147]
- AlphaFold DB [5119]
- InterPro [4296]
- Gene Ontology [4225]
- Pfam [3979]
- ChEBI [3565]
- ChEMBL [3215]
- DrugBank [2971]
- Complex Portal [1716]
- EMPIAR [1446]
- SCOP2 [64]
- EMDB [50]
- CATH [44]
Cryo-EM structure of the LB_DQB0301_A Fab - HLA-DQB1 03:01/DQA1 05:02 human alloantibody-HLA complex
CryoEM
Release date: July 15, 2026
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9ruf
Q-score: 0.469
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9ruf
Q-score: 0.469
Zampieri V, Priddey A, Kosmoliaptsis V, Marquez JA
To Be Published
Cryo-EM structure of the LB_DQB0303_A Fab - HLA-DQB1 03:03/DQA1 02:01 human alloantibody-HLA complex
CryoEM
Release date: July 15, 2026
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 9rug
Q-score: 0.487
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 9rug
Q-score: 0.487
Zampieri V, Priddey A, Linares R, Kosmoliaptsis V, Marquez JA
To Be Published
Cryo-EM structure of the LB_DQB0602_B Fab - HLA-DQB1 06:02/DQA1 01:02 human alloantibody-HLA complex
CryoEM
Release date: July 15, 2026
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 9ruh
Q-score: 0.522
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 9ruh
Q-score: 0.522
Zampieri V, Priddey A, Kosmoliaptsis V, Marquez JA
To Be Published
CryoEM
Release date: July 15, 2026
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 29km
Q-score: 0.491
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 29km
Q-score: 0.491
Guyet A, Campoy RR, Manja P, Schramm FD, Pelliciari S, Fenyk S, Li Y, Winterhalter C, Ilangovan A, Murray H
Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag630 Pubmed: 42391047 ]
CryoEM
Release date: July 15, 2026
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 9k91
Q-score: 0.31
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 9k91
Q-score: 0.31
Sun C, Wang Y, Cai S, Xie K, Li M, Zhu Z, Chao Y, Zhou Z, Chen Y, Xue W, Mu X, Bian X, Miao W, Wu J, Ding Q, Wang M, Tao B, Zhang I, Zhu Y, Qu Q, Zhu Y
To Be Published
CryoEM
Release date: July 15, 2026
Resolution: 3.6 Å
EM Method: Single-particle
Resolution: 3.6 Å
EM Method: Single-particle
Chen XX, Xu Q, Shi ZB, Yang PG
To Be Published
CryoEM
Release date: July 15, 2026
Resolution: 2.86 Å
EM Method: Subtomogram averaging
Resolution: 2.86 Å
EM Method: Subtomogram averaging
Makino F, Yanagisawa H, Eisenstein F, Miyata T, Kinoshita M, Kikkawa M, Namba K
Aims Biophys (2026) 13 pp. 131-142 [ DOI: doi:10.3934/biophy.2026008 ]
CryoEM
Release date: July 15, 2026
Resolution: 6.3 Å
EM Method: Single-particle
Resolution: 6.3 Å
EM Method: Single-particle
Khan S, Tyson AS, Ranjbar M, Zhang Z, Singh J, Han GW, Gati C
Nature (2025) 648 pp. 755-763 [ DOI: doi:10.1038/s41586-025-09677-6 Pubmed: 41193810 ]
CryoEM
Release date: July 15, 2026
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9y61
Q-score: 0.375
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9y61
Q-score: 0.375
Hu B, Edwards J, Modi H, Gamez J, Echeagaray OE, Hess K, Ren Y, Anderson D, Larrayoz M, Zhu J, Johnson SA, Deb G, Jankeel D, Janardhanan P, Leisten J, Peng S, Christoforou A, Stong N, Fontanillo C, Bjorklund CC, Hagner PR, Gandhi AK, Martinez-Climent JA, Narla RK, Lopez-Girona A, Rolfe M, Bence N, Mortensen DS, Groocock L
Blood (2026) [ DOI: doi:10.1182/blood.2025031998 Pubmed: 42371798 ]
CryoEM
Release date: July 15, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9yyg
Q-score: 0.456
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9yyg
Q-score: 0.456
Skopintsev P, Esain-Garcia I, Doudna J
To Be Published
Filter By
Current Database
- EMDB [7892]
- EMPIAR [53]
Current status
- REL [7945]
Sample type
- Complex [6819]
- Protein [5855]
- Ligand [3806]
- RNA [668]
- DNA [541]
- Cellular component [452]
- Cell [380]
- Virus [188]
- Sample [92]
- Tissue [50]
- Other [30]
- Em label [1]
Organism
- Homo sapiens [3364]
- Mus musculus [666]
- Synthetic construct [501]
- Escherichia coli [481]
- Rattus norvegicus [309]
- Saccharomyces cerevisiae [268]
- Severe acute respiratory syndrome coronavirus [224]
- Bos taurus [198]
- Oryctolagus cuniculus [170]
- Escherichia coli [160]
- Lama glama [154]
- Human immunodeficiency virus 1 [138]
- Saccharomyces cerevisiae [83]
- Sus scrofa [79]
- Arabidopsis thaliana [72]
- Geobacillus stearothermophilus [64]
- Drosophila melanogaster [61]
- Macaca mulatta [59]
- Mycolicibacterium smegmatis [58]
- Xenopus laevis [50]
- Gallus gallus [45]
- Mycobacterium tuberculosis [41]
- Influenza a virus [37]
- Vicugna pacos [36]
- Bacillus subtilis [35]
- Schizosaccharomyces pombe [35]
- Aequorea victoria [34]
- Cricetulus griseus [33]
- Caenorhabditis elegans [33]
- Mycobacterium tuberculosis [32]
- Human cytomegalovirus [30]
- Simian virus 40 [30]
- Pseudomonas aeruginosa [30]
- Human herpesvirus 1 [29]
- Salmonella enterica [29]
- Mycoplasma pneumoniae [28]
- Plasmodium falciparum [25]
- Danio rerio [25]
- Listeria innocua [24]
- Escherichia coli [24]
- Saccharomyces cerevisiae [24]
- Escherichia coli [24]
- (no species) [23]
- Mycolicibacterium thermoresistibile [21]
- Streptococcus thermophilus [20]
- Human coronavirus hku1 [20]
- Macrocystis pyrifera [20]
- Acetivibrio thermocellus [19]
- Caulobacter vibrioides [19]
- Salmonella enterica [19]
- Enterobacteria phage t4 [18]
- Staphylococcus aureus [18]
- Pseudomonas aeruginosa [18]
- Enterobacteria phage t4 [17]
- Betacoronavirus 1 [17]
- Escherichia coli [17]
- Pseudoalteromonas sp. s983 [16]
- Vibrio cholerae [16]
- (no species) [16]
- Streptomyces lasalocidi [15]
- Scytonema hofmannii [15]
- Trypanosoma brucei [15]
- Hantaan orthohantavirus [14]
- Sulfolobus acidocaldarius [14]
- Thermus thermophilus [14]
- Dictyostelium discoideum [14]
- Hepacivirus c [13]
- Bacillus subtilis [13]
- Candida albicans [13]
- Saccharomyces cerevisiae [12]
- Thermus thermophilus [12]
- Tetrahymena thermophila [12]
- Pyrobaculum calidifontis [12]
- Neovison vison [12]
- Plasmodium falciparum [12]
- Aquifex aeolicus [12]
- Fusarium vanettenii [12]
- Strongylocentrotus purpuratus [12]
- (no species) [11]
- Adeno-associated dependoparvovirus a [11]
- Pseudomonas phage phi6 [11]
- Human immunodeficiency virus 1 [11]
- Methanothermobacter thermautotrophicus [11]
- Spirochaeta thermophila [11]
- Aquifex aeolicus [11]
- Entamoeba histolytica [11]
- Chlamydomonas reinhardtii [11]
- Serratia entomophila [11]
- Tetrahymena thermophila [11]
- Enterococcus italicus [11]
- Canis lupus [11]
- Escherichia virus t7 [10]
- Synechocystis sp. pcc 6803 [10]
- Measles morbillivirus [10]
- Caulobacter vibrioides [10]
- Retbasiphovirus hftv1 [10]
- Azotobacter vinelandii [10]
- Mycobacteroides abscessus [10]
- Schizosaccharomyces pombe [10]
- Plasmodium falciparum [10]
EM Method
- Single-particle [6956]
- Subtomogram averaging [444]
- Tomography [263]
- Helical reconstruction [227]
- Electron Crystallography [2]
Resolution
- < 2Å [141]
- ≥ 2Å and < 3Å [2118]
- ≥ 3Å and < 4Å [3563]
- ≥ 4Å and < 5Å [756]
- ≥ 5Å and < 6Å [141]
- ≥ 6Å and < 8Å [313]
- ≥ 8Å and < 12Å [221]
- ≥ 12Å and < 16Å [50]
- ≥ 16Å and < 20Å [54]
- ≥ 20Å and < 30Å [110]
- ≥ 30Å [158]
Model molecular weight
- 0-50 kDa [69]
- 50-100 kDa [427]
- 100-250 kDa [1947]
- 250-500 kDa [1525]
- 500-1000 kDa [642]
- 1-2 MDa [262]
- 2-5 MDa [228]
- 5-10 MDa [31]
- > 10 MDa [21]
Release Date
- 2026 [975]
- 2025 [1636]
- 2024 [1477]
- 2023 [1120]
- 2022 [865]
- 2021 [715]
- 2020 [474]
- 2019 [206]
- 2018 [203]
- 2017 [111]
- 2016 [92]
- 2015 [25]
- 2014 [24]
- 2013 [2]
- 2012 [4]
- 2010 [5]
- 2009 [1]
- 2007 [1]
- 2004 [1]
- 2003 [8]
Author by name
- Zhang Z [176]
- Ward AB [161]
- Klinge S [160]
- Liu Y [159]
- Vanden Broeck A [156]
- Kobilka BK [150]
- Zhang Y [148]
- Skiniotis G [141]
- Lander GC [136]
- Gao Y [135]
- Rubinstein JL [134]
- Sobolevsky AI [131]
- Hirst J [127]
- Lyumkis D [125]
- Wang X [121]
- Panova O [119]
- Gmeiner P [114]
- Greber BJ [113]
- Li Y [113]
- Frank J [111]
- Hilger D [111]
- Papasergi-scott MM [111]
- Seven AB [110]
- Eskici G [106]
- Hildebrand PW [106]
- Batebi H [104]
- Casiraghi M [104]
- He F [104]
- Maul L [104]
- Perez-hernandez G [104]
- Kotecha A [103]
- Wang Y [100]
- Blaza JN [98]
- Zhang X [97]
- Bridges HR [94]
- Wang J [94]
- Beck M [91]
- Chen J [90]
- Feng J [89]
- Chung I [88]
- Yin Z [87]
- Paulino C [85]
- Li Z [82]
- Li H [81]
- Cushing VI [80]
- Yelshanskaya MV [80]
- Gati C [78]
- Zhang J [77]
- Chen X [76]
- Clarke OB [74]
- Gold VAM [73]
- Han GW [73]
- Li J [73]
- Savva CG [72]
- Aricescu AR [71]
- Tan YZ [71]
- Mahamid J [70]
- Vinothkumar KR [70]
- Xu Y [70]
- Hite RK [69]
- Hummer G [69]
- Park J [69]
- Potter CS [69]
- Carragher B [68]
- Koh AF [68]
- Ali S [67]
- Cheng Y [67]
- Daum B [67]
- Wu M [67]
- Borgnia MJ [65]
- Khan S [65]
- Pollak MN [65]
- Antanasijevic A [64]
- Williamson JR [63]
- Gouaux E [62]
- Guo H [62]
- Hendrickson WA [62]
- Mclaren M [62]
- Bahl AK [61]
- Barbazanges M [61]
- Barrett AGM [61]
- Bondke A [61]
- Jurgaityte K [61]
- Kroll SHB [61]
- Scheiper B [61]
- Tyson AS [61]
- Yang X [61]
- Darst SA [60]
- Liu J [60]
- Rheinberger J [59]
- Baumeister W [58]
- Nadezhdin KD [58]
- Wang L [58]
- Wang YX [58]
- Degenhardt MFS [57]
- Gangwar SP [56]
- Zhang L [56]
- Brown ZP [55]
- Sewall LM [55]
- Stagno J [55]
Author by ORCID
- Klinge S [160]
- Vanden Broeck A [156]
- Kobilka BK [141]
- Skiniotis G [128]
- Ward AB [123]
- Rubinstein JL [120]
- Lander GC [113]
- Gmeiner P [112]
- Gao Y [111]
- Hirst J [109]
- Papasergi-scott MM [109]
- Hilger D [108]
- Greber BJ [107]
- Batebi H [104]
- Panova O [104]
- He F [104]
- Perez-hernandez G [104]
- Hildebrand PW [104]
- Kotecha A [99]
- Lyumkis D [99]
- Sobolevsky AI [97]
- Blaza JN [91]
- Bridges HR [87]
- Feng J [82]
- Chung I [81]
- Paulino C [80]
- Yin Z [79]
- Cushing VI [76]
- Tan YZ [69]
- Hummer G [69]
- Hite RK [68]
- Ali S [67]
- Aricescu AR [67]
- Frank J [66]
- Pollak MN [65]
- Koh AF [64]
- Mahamid J [64]
- Gati C [64]
- Gold VAM [62]
- Williamson JR [62]
- Barbazanges M [61]
- Barrett AGM [61]
- Jurgaityte K [61]
- Daum B [60]
- Cheng Y [59]
- Mclaren M [58]
- Wang YX [57]
- Gangwar SP [56]
- Degenhardt MFS [56]
- Stagno J [55]
- Brown ZP [55]
- Nadezhdin KD [54]
- Fromme JC [54]
- Rheinberger J [54]
- Gagnon MG [53]
- Bagde SR [52]
- Malinauskas T [52]
- Guo H [51]
- Neuberger A [50]
- Des Georges A [50]
- Lee SY [49]
- Hellen CUT [49]
- Pestova TV [49]
- Kreysing JP [48]
- Borgnia MJ [47]
- Nimigean CM [46]
- Grotjahn DA [44]
- Ranjbar M [44]
- Beck M [44]
- Shan Z [44]
- Zhang Z [44]
- Crispin M [43]
- Cottrell CA [43]
- Rice WJ [43]
- Mihaylov DB [43]
- Lima CD [43]
- Hamdan SM [42]
- Rabuck-gibbons JN [42]
- Park E [42]
- Kwong PD [42]
- Copps J [42]
- Isupov MN [41]
- Nogales E [41]
- Yamashita K [41]
- Hallberg BM [41]
- Kurnikova MG [41]
- Grunewald K [40]
- Ozorowski G [40]
- Mclellan JS [40]
- Crotty S [39]
- Wilfling F [39]
- Darst SA [39]
- Burton DR [38]
- Baumeister W [38]
- Bai XC [38]
- Cate JHD [37]
- Li H [37]
- Sosa H [37]
- Zhou ZH [37]
- Gouaux E [37]
Journal
- NAT COMMUN [1572]
- NATURE [791]
- TO BE PUBLISHED [658]
- BIORXIV [625]
- SCIENCE [565]
- NAT STRUCT MOL BIOL [515]
- PNAS [464]
- SCI ADV [363]
- ELIFE [313]
- CELL [304]
- STRUCTURE [209]
- MOL CELL [183]
- NUCLEIC ACIDS RES [157]
- EMBO J [141]
- COMMUN BIOL [92]
- CELL REP [90]
- ACTA CRYSTALLOGR D STRUCT BIOL [81]
- NAT MICROBIOL [69]
- NAT CHEM BIOL [66]
- J BIOL CHEM [65]
- NAT METHODS [65]
- CELL RES [46]
- J STRUCT BIOL [46]
- PROTEIN SCI [44]
- EMBO REP [42]
- J MOL BIOL [35]
- J CELL BIOL [34]
- J STRUCT BIOL X [34]
- NAT CELL BIOL [31]
- NEURON [26]
- IMMUNITY [25]
- SCI REP [24]
- CELL DISCOV [22]
- J AM CHEM SOC [22]
- IUCRJ [21]
- J VIROL [21]
- J MED CHEM [18]
- MBIO [18]
- PLOS BIOL [18]
- J CELL SCI [15]
- INT J BIOL MACROMOL [14]
- LIFE SCI ALLIANCE [13]
- BIOCHEMISTRY [12]
- CELL HOST MICROBE [12]
- PLOS ONE [12]
- PLOS PATHOG [12]
- ANGEW CHEM INT ED ENGL [11]
- BLOOD [11]
- NAT PLANTS [10]
- ACS CENT SCI [9]
- NAT IMMUNOL [9]
- PROTEIN CELL [9]
- SIGNAL TRANSDUCT TARGET THER [9]
- ACS CHEM BIOL [8]
- ADV SCI [8]
- DEV CELL [8]
- ISCIENCE [8]
- J GEN VIROL [8]
- ACS BIO MED CHEM AU [7]
- FEBS LETT [7]
- MOL MICROBIOL [7]
- NAT CATAL [7]
- BIOCHEM J [6]
- J GEN PHYSIOL [6]
- MOL BIOL CELL [6]
- MOL PLANT [6]
- SCI SIGNAL [6]
- ACS NANO [5]
- BIOCHEM BIOPHYS RES COMMUN [5]
- BIOPHYS J [5]
- FEBS J [5]
- GENOME BIOL EVOL [5]
- MOL.BIOL.EVOL. [5]
- NPJ VACCINES [5]
- RES [5]
- RES SQ [5]
- RNA [5]
- SCI TRANSL MED [5]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [4]
- ACTA NEUROPATHOL [4]
- ADV MATER [4]
- BIOCHIM BIOPHYS ACTA [4]
- BIOCHIM BIOPHYS ACTA BIOENERG [4]
- CANCER DISCOV [4]
- J IMMUNOL. [4]
- MICROSCOPY [4]
- NAT BIOTECHNOL [4]
- OPEN BIOL [4]
- PLANT COMMUN. [4]
- SCI IMMUNOL [4]
- ULTRAMICROSCOPY [4]
- ACS MED.CHEM.LETT. [3]
- AM J KIDNEY DIS [3]
- ANNU REV BIOPHYS [3]
- CURR BIOL [3]
- CURR TOP DEV BIOL [3]
- GENES DEV [3]
- J EXP MED [3]
- J MOL CELL BIOL [3]
- J PHARMACOL EXP THER [3]
Software
- CRYOSPARC [3916]
- RELION [2677]
- CTFFIND [535]
- IMOD [241]
- GCTF [236]
- WARP [156]
- CISTEM [110]
- COOT [104]
- FREALIGN [104]
- UCSF CHIMERAX [65]
- DYNAMO [55]
- NOVASTA [54]
- PEET [51]
- EMAN2 [39]
- ETOMO [38]
- UCSF CHIMERA [38]
- PHENIX [29]
- PYTOM [25]
- NOVACTF [23]
- XMIPP [20]
- APPION [19]
- CTFTILT [18]
- CRYOLO [16]
- M [16]
- MOTIONCORR2 [15]
- ISOLDE [13]
- CTFPHASEFLIP [12]
- SIMPLE [12]
- SPIDER, FREALIGN [12]
- CHIMERA [10]
- CTFFIND4 [9]
- MATLAB [9]
- PRIISM/IVE [9]
- TOMO3D [9]
- EMAN2, RELION [7]
- TOM TOOLBOX [7]
- TOM, AV3 [7]
- ARETOMO [6]
- EMREADY [6]
- PHOELIX, SUPRIM [6]
- SPHIRE [6]
- BSOFT, EMAN2, RELION, SPIDER, IHRSR [5]
- EMAN [4]
- EMCLARITY [4]
- ETOMO, IMOD [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- ETOMO, FROM, IMOD, SOFTWARE [3]
- PROTOMO, IMOD [3]
- SCIPION [3]
- SITUS [3]
- SPIDER, EMAN, IHRSR, BSOFT [3]
- TOMOALIGN [3]
- FLEX-EM [2]
- I3 [2]
- NAMD [2]
- PHOELIX [2]
- SPIDER [2]
- STOPGAP [2]
- SUBTOM [2]
- TOM [2]
- CHIMERA, IMODFIT [1]
- CHIMERA, MDFF [1]
- CHIMERA, VMD, MDFF [1]
- CRYOSPAR [1]
- CTFFIND3 [1]
- CTFFIND3, EMAN, BOXER, IMAGIC, FPM, RELION [1]
- CTFFIND3, EMAN, BOXER, IMAGIC, FPM, SPIDER [1]
- E2BOXER [1]
- EMAN2, SPARX, RELION [1]
- IMAGIC, FREALIGN [1]
- IMAGIC, SPIDER [1]
- IMOD, AV3, TOM, DYNAMO [1]
- IMOD, PEET, CTFFIND3D, EMAN, BOXER , FPM, SPIDER [1]
- IMOD, TOMO3D [1]
- IMOD, TOMO3D, RELION [1]
- JSPR [1]
- JSPR, EMAN2 [1]
- JSPR, EMAN2, EMAN [1]
- LEGINON [1]
- MD [1]
- PYTO [1]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [1]
- REFMAC [1]
- SERIALEM [1]
- SPARX [1]
- SPRING [1]
- TOMOCTF [1]
- TOPAZ [1]
- XMIPP, RELION [1]
Microscope
- FEI TITAN KRIOS [4093]
- TFS KRIOS [2429]
- FEI TALOS ARCTICA [543]
- TFS GLACIOS [339]
- FEI POLARA 300 [94]
- JEOL CRYO ARM 300 [74]
- FEI TECNAI F30 [63]
- FEI TITAN [52]
- FEI TECNAI ARCTICA [42]
- TFS TALOS [38]
- FEI TECNAI F20 [37]
- FEI TECNAI 20 [17]
- JEOL 2200FS [12]
- FEI/PHILIPS CM300FEG/T [9]
- FEI/PHILIPS CM120T [8]
- JEOL 3200FSC [8]
- JEOL 1400/HR YPS FEG [7]
- JEOL CRYO ARM 200 [7]
- TFS TITAN THEMIS [5]
- FEI TECNAI 12 [3]
- JEOL 2200FSC [3]
- FEI/PHILIPS CM200FEG [2]
- FEI/PHILIPS CM200FEG/ST [2]
- FEI/PHILIPS CM300FEG/HE [2]
- JEOL 2100 [2]
- TFS TALOS F200C [2]
- TFS TUNDRA [2]
- FEI TECNAI SPIRIT [1]
- JEOL 2100F [1]
- SHUIMU TOTEM 300S [1]
Electron Source
- FIELD EMISSION GUN [7838]
- LAB6 [26]
- OTHER [22]
- TUNGSTEN HAIRPIN [6]
Film or detector model
- GATAN K3 6K X 4K [2208]
- GATAN K3 BIOQUANTUM 6K X 4K [1895]
- GATAN K2 SUMMIT 4K X 4K [1494]
- FEI FALCON IV 4K X 4K [982]
- TFS FALCON 4I 4K X 4K [442]
- FEI FALCON III 4K X 4K [380]
- GATAN K2 QUANTUM 4K X 4K [207]
- GATAN K3 BIOCONTINUUM 6K X 4K [77]
- FEI FALCON II 4K X 4K [38]
- GATAN ULTRASCAN 4000 4K X 4K [27]
- OTHER [27]
- KODAK SO-163 FILM [24]
- GATAN K2 BASE 4K X 4K [22]
- GATAN K2 4K X 4K [13]
- DIRECT ELECTRON DE-20 5K X 3K [12]
- DIRECT ELECTRON APOLLO 4K X 4K [10]
- GATAN MULTISCAN [10]
- DIRECT ELECTRON DE-10 5K X 4K [9]
- FEI FALCON I 4K X 4K [9]
- DECTRIS SINGLA 1K X 1K [8]
- TVIPS TEMCAM-F416 4K X 4K [5]
- DIRECT ELECTRON DE-64 8K X 8K [4]
- GATAN ULTRASCAN 1000 2K X 2K [4]
- DIRECT ELECTRON DE-16 4K X 4K [3]
- FEI CETA 4K X 4K [3]
- FEI EAGLE 4K X 4K [3]
- TVIPS TEMCAM-F224 2K X 2K [3]
- GATAN ALPINE 2.3K X 3.2K [2]
- GATAN K2 IS 4K X 4K [2]
- DECTRIS ELA 1K X 0.5K [1]
- GENERIC GATAN 4K X 4K [1]
- TVIPS TEMCAM-F415 4K X 4K [1]
EMPIAR Experiment type
- EMDB [50]
- SSET [2]
- FIB-SEM [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [35]
- TILT SERIES [16]
- RECONSTRUCTED VOLUMES [8]
- MICROGRAPHS - SINGLE FRAME [5]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [1]
- STITCHED MAPS [1]
External links
- PDB [7832]
- UniProt [5504]
- PDBe-Kb [5147]
- AlphaFold DB [5119]
- InterPro [4296]
- Gene Ontology [4225]
- Pfam [3979]
- ChEBI [3565]
- ChEMBL [3215]
- DrugBank [2971]
- Complex Portal [1716]
- EMPIAR [1446]
- SCOP2 [64]
- EMDB [50]
- CATH [44]