Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
Filter By
Current Database
- EMDB [49277]
- EMPIAR [4]
Current status
- REL [49281]
Sample type
- Complex [39895]
- Protein [33634]
- Ligand [19058]
- RNA [4470]
- Virus [3731]
- DNA [3118]
- Sample [2907]
- Cellular component [2903]
- Cell [1551]
- Tissue [232]
- Other [222]
- Em label [2]
Organism
- Homo sapiens [17546]
- Synthetic construct [3554]
- Mus musculus [3149]
- Escherichia coli [2762]
- Severe acute respiratory syndrome coronavirus [2270]
- Saccharomyces cerevisiae [2265]
- Rattus norvegicus [1090]
- Escherichia coli [1052]
- Bos taurus [1019]
- Sus scrofa [856]
- Oryctolagus cuniculus [828]
- Xenopus laevis [788]
- Saccharomyces cerevisiae [746]
- Human immunodeficiency virus 1 [738]
- Lama glama [551]
- Arabidopsis thaliana [490]
- Chlamydomonas reinhardtii [419]
- Drosophila melanogaster [315]
- Mycolicibacterium smegmatis [313]
- Bacillus subtilis [250]
- Gallus gallus [227]
- Mycobacterium tuberculosis [224]
- Tetrahymena thermophila [195]
- Influenza a virus [193]
- Pseudomonas aeruginosa [170]
- Danio rerio [168]
- Enterobacteria phage m13 [166]
- Staphylococcus aureus [165]
- Thermus thermophilus [165]
- Escherichia coli [162]
- Vicugna pacos [160]
- Macaca mulatta [160]
- Chaetomium thermophilum [158]
- Caenorhabditis elegans [152]
- Saccharomyces cerevisiae [136]
- Leishmania tarentolae [136]
- Mycobacterium tuberculosis [133]
- Enterobacteria phage t4 [122]
- (no species) [121]
- Salmonella enterica [121]
- Chaetomium thermophilum [120]
- Bacillus subtilis [119]
- Bacillus sp. (strain ps3) [113]
- Synechocystis sp. pcc 6803 [109]
- Plasmodium falciparum [109]
- Schizosaccharomyces pombe [107]
- Plasmodium falciparum [98]
- Vibrio cholerae [96]
- Ovis aries [96]
- Escherichia virus t7 [95]
- Streptococcus pyogenes [92]
- Pseudomonas aeruginosa [92]
- Trypanosoma brucei [89]
- Mycoplasma pneumoniae [88]
- Hepatitis b virus [85]
- African swine fever virus [84]
- Mycolicibacterium smegmatis [82]
- Spinacia oleracea [78]
- Sus scrofa [76]
- Monkeypox virus [73]
- Cricetulus griseus [72]
- Chikungunya virus [70]
- Aequorea victoria [68]
- Human herpesvirus 1 [67]
- Human cytomegalovirus [67]
- Clostridioides difficile [67]
- Thermus thermophilus [66]
- Severe acute respiratory syndrome coronavirus [65]
- Middle east respiratory syndrome-related coronavirus [64]
- Thermoplasma acidophilum [64]
- Legionella pneumophila [64]
- Canis lupus [64]
- Schizosaccharomyces pombe [62]
- Saccharomyces cerevisiae [62]
- Trypanosoma brucei [61]
- Escherichia coli [61]
- Klebsiella pneumoniae [60]
- Salmonella enterica [60]
- Adeno-associated virus [59]
- Polytomella sp. pringsheim 198.80 [59]
- (no species) [58]
- Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [58]
- Dictyostelium discoideum [55]
- Enterovirus d [55]
- Neurospora crassa [55]
- Amanita phalloides [55]
- Eastern equine encephalitis virus [54]
- Enterobacteria phage t4 [54]
- Porphyridium purpureum [52]
- Parengyodontium album [51]
- Clostridium botulinum [50]
- Severe acute respiratory syndrome coronavirus [50]
- Enterovirus c [49]
- Dna molecule [49]
- Zika virus [47]
- Torpedo marmorata [47]
- Thermotoga maritima [46]
- Equus caballus [46]
- Streptomyces coelicolor [45]
- Human coronavirus hku1 [45]
EM Method
- Single-particle [41741]
- Subtomogram averaging [2822]
- Tomography [2314]
- Helical reconstruction [2259]
- Electron Crystallography [141]
Resolution
- < 2Å [365]
- ≥ 2Å and < 3Å [10285]
- ≥ 3Å and < 4Å [21173]
- ≥ 4Å and < 5Å [5205]
- ≥ 5Å and < 6Å [1236]
- ≥ 6Å and < 8Å [2562]
- ≥ 8Å and < 12Å [2286]
- ≥ 12Å and < 16Å [944]
- ≥ 16Å and < 20Å [631]
- ≥ 20Å and < 30Å [1310]
- ≥ 30Å [1630]
Model molecular weight
- 0-50 kDa [655]
- 50-100 kDa [1919]
- 100-250 kDa [9499]
- 250-500 kDa [7840]
- 500-1000 kDa [4551]
- 1-2 MDa [2115]
- 2-5 MDa [2243]
- 5-10 MDa [595]
- > 10 MDa [461]
Release Date
- 2026 [72]
- 2025 [11149]
- 2024 [9009]
- 2023 [7466]
- 2022 [5816]
- 2021 [4247]
- 2020 [3414]
- 2019 [2185]
- 2018 [1534]
- 2017 [981]
- 2016 [912]
- 2015 [488]
- 2014 [384]
- 2013 [391]
- 2012 [298]
- 2011 [199]
- 2010 [172]
- 2009 [166]
- 2008 [49]
- 2007 [121]
- 2006 [110]
- 2005 [44]
- 2004 [29]
- 2003 [38]
- 2002 [7]
Author by name
- Liu J [1618]
- Zhang Y [1589]
- Zhang X [1489]
- Wang Y [1471]
- Wang X [1207]
- Zhang M [1081]
- Liu Y [1063]
- Li Y [1053]
- Wang J [1014]
- Zhang Z [1003]
- Ren G [965]
- Li S [956]
- Li Z [952]
- Li X [926]
- Zhang J [835]
- Li J [809]
- Gao Y [769]
- Wang L [756]
- Zhang L [737]
- Wang S [729]
- Wang H [723]
- Chen Y [699]
- Liu S [673]
- Zhou ZH [638]
- Chen X [623]
- Shi Y [607]
- Wang C [607]
- Li H [606]
- Liu C [573]
- Zhang S [572]
- Liu X [569]
- Chen Z [566]
- Zhang K [564]
- Xu Y [559]
- Wang Q [556]
- Beckmann R [543]
- Liu L [540]
- Wu H [537]
- Liu Z [534]
- Ward AB [533]
- Zhu Y [532]
- Chen J [529]
- Zhang H [524]
- Yang Y [516]
- Jiang Y [511]
- Wang Z [502]
- Li D [497]
- Zhao Y [485]
- Xu J [477]
- Chiu W [471]
- Cheng J [468]
- Li W [467]
- Yang X [466]
- Liu H [458]
- Huang Y [455]
- Zhou L [452]
- Xu C [428]
- Hu Z [418]
- Zhang C [408]
- Wang P [393]
- Wang F [385]
- Zhang P [384]
- Wu J [381]
- Zhang R [379]
- Berninghausen O [373]
- Chen L [371]
- Zhou Q [371]
- Kotecha A [370]
- Zhao J [370]
- Cramer P [369]
- Sun Y [368]
- Baumeister W [366]
- Zhou Y [366]
- Brown A [365]
- Yu X [364]
- Rubinstein JL [363]
- Zhang W [363]
- Zhao X [361]
- Wang M [358]
- Rao Z [355]
- Wu C [354]
- Yu Z [351]
- Li L [343]
- Li M [342]
- Zhang B [341]
- Wu Y [339]
- Gang O [337]
- Wang W [336]
- Scheres SHW [334]
- Zhu X [334]
- Zhou J [332]
- Yang F [330]
- Yang H [330]
- Lu Y [328]
- Cheng Y [327]
- Sun L [327]
- Xu HE [317]
- Lyumkis D [316]
- Yuan Q [315]
- Skiniotis G [311]
Author by ORCID
- Ren G [936]
- Liu J [923]
- Zhou ZH [439]
- Chiu W [416]
- Zhang M [393]
- Brown A [348]
- Kotecha A [347]
- Beckmann R [313]
- Klinge S [295]
- Skiniotis G [295]
- Rubinstein JL [283]
- Ward AB [269]
- Kwong PD [258]
- Lyumkis D [253]
- Cheng Y [251]
- Gao N [247]
- Scheres SHW [244]
- Raunser S [240]
- Pilhofer M [237]
- Tao J [223]
- Bustamante C [223]
- Ashby PD [223]
- Kobilka BK [218]
- Hummer G [218]
- Plevka P [217]
- Xu HE [213]
- Amunts A [211]
- Andersen ES [205]
- Gao Y [205]
- Geary C [198]
- Subramaniam S [197]
- Gao GF [194]
- Li H [193]
- Cheng J [189]
- Gmeiner P [188]
- Papasergi-scott MM [188]
- He F [186]
- Zheng Q [186]
- Beck M [185]
- Briggs JAG [184]
- Fuzik T [181]
- Cramer P [180]
- Zeng J [180]
- Kishikawa JI [180]
- Vanden Broeck A [178]
- Borgnia MJ [177]
- Nureki O [177]
- Hurt E [176]
- Ranson NA [173]
- Kuhlbrandt W [170]
- Mahamid J [169]
- Williamson JR [169]
- Baker D [168]
- Hilger D [167]
- Zhang K [167]
- Kikkawa M [165]
- Gui M [164]
- Baumeister W [163]
- Huiskonen JT [163]
- Schmid MF [163]
- Panova O [162]
- Batebi H [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Wilson DN [160]
- Greber BJ [158]
- Denk T [158]
- Xia X [157]
- Bai XC [157]
- Rappsilber J [156]
- Itoh Y [156]
- Schulman BA [155]
- Wang X [155]
- Du J [155]
- Miotto MC [153]
- Stahlberg H [151]
- Zhang K [151]
- Zhang P [151]
- Venugopal H [148]
- Plitzko JM [148]
- Xia N [146]
- Edwards RJ [146]
- Nogales E [144]
- Engel BD [144]
- Zhang X [143]
- Goedert M [143]
- Torres JL [142]
- Grigorieff N [141]
- Xu J [141]
- Li N [140]
- Conway JF [140]
- Chai P [139]
- Zhang R [139]
- Agard DA [138]
- Novacek J [138]
- Egelman EH [137]
- Schoehn G [136]
- Robinson CV [135]
- Yang M [135]
- Jiang W [134]
Journal
- NAT COMMUN [9249]
- TO BE PUBLISHED [4933]
- NATURE [4308]
- NAT STRUCT MOL BIOL [2902]
- PNAS [2832]
- SCIENCE [2572]
- CELL [2122]
- BIORXIV [2060]
- ELIFE [1614]
- MOL CELL [1602]
- SCI ADV [1595]
- STRUCTURE [1295]
- NUCLEIC ACIDS RES [942]
- CELL REP [908]
- EMBO J [695]
- CELL RES [652]
- J VIROL [597]
- COMMUN BIOL [562]
- J MOL BIOL [469]
- NAT MICROBIOL [448]
- CELL DISCOV [420]
- J BIOL CHEM [413]
- NAT CHEM BIOL [389]
- PLOS PATHOG [369]
- ACTA CRYSTALLOGR D STRUCT BIOL [337]
- J STRUCT BIOL [307]
- NAT METHODS [282]
- NAT PLANTS [221]
- SCI REP [221]
- MBIO [210]
- PLOS BIOL [190]
- EMBO REP [189]
- CELL HOST MICROBE [177]
- J CELL BIOL [176]
- J AM CHEM SOC [164]
- PROTEIN CELL [145]
- VIRUSES [124]
- PROTEIN SCI [122]
- IMMUNITY [121]
- NEURON [103]
- IUCRJ [96]
- INT J MOL SCI [93]
- LIFE SCI ALLIANCE [92]
- PLOS ONE [88]
- ISCIENCE [84]
- J STRUCT BIOL X [83]
- PNAS NEXUS [81]
- CURR BIOL [75]
- DEV CELL [75]
- BIOCHEMISTRY [74]
- MOL BIOL CELL [72]
- ACS NANO [71]
- J MED CHEM [70]
- COMMUN CHEM [68]
- SCI TRANSL MED [66]
- RES SQ [62]
- NPJ VACCINES [59]
- SIGNAL TRANSDUCT TARGET THER [58]
- ADV SCI [54]
- BLOOD [54]
- ACTA NEUROPATHOL [53]
- FRONT ENDOCRINOL [53]
- ANGEW CHEM INT ED ENGL [51]
- NAT NANOTECHNOL [49]
- VIROLOGY [48]
- INT J BIOL MACROMOL [47]
- BIOMOLECULES [45]
- NAT CELL BIOL [45]
- RNA [44]
- NAT CATAL [43]
- MOL PLANT [41]
- BIOCHEM BIOPHYS RES COMMUN [40]
- J CLIN INV [40]
- FEBS LETT [39]
- SCI IMMUNOL [39]
- FEBS J [38]
- FRONT MOL BIOSCI [37]
- NAT CHEM [37]
- J CELL SCI [35]
- EMERG MICROBES INFECT [34]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- MOL MICROBIOL [29]
- GENES DEV [27]
- NATL SCI REV [27]
- PLANT CELL [27]
- PLANT COMMUN. [27]
- J EXP MED [26]
- BIOCHEM J [25]
- FRONT IMMUNOL [24]
- FRONT MICROBIOL [24]
- NAT MATER [24]
- OPEN BIOL [23]
- BIOPHYS J [22]
- CELL DEATH DIFFER. [22]
- HLIFE [22]
- SCI BULL (BEIJING) [22]
- ACS CENT SCI [21]
- ACS CHEM BIOL [21]
- J.MOL.CELL.CARDIOL. [21]
- SMALL [21]
Software
- RELION [12370]
- CRYOSPARC [11580]
- CTFFIND [2169]
- GCTF [1389]
- IMOD [958]
- SPIDER [631]
- CISTEM [454]
- FREALIGN [421]
- IPET [416]
- WARP [397]
- TOMOCTF [383]
- CHIMERA [348]
- DYNAMO [309]
- EMAN2 [272]
- EMAN [251]
- COOT [246]
- PEET [232]
- PHENIX [187]
- JSPR [142]
- PYTOM [123]
- XMIPP [120]
- AUTO3DEM [119]
- MATLAB [116]
- UCSF CHIMERA [112]
- SPHIRE [107]
- CRYOLO [94]
- UCSF CHIMERAX [88]
- IMAGIC [87]
- AV3 [82]
- NOVACTF [81]
- CTFPHASEFLIP [69]
- ETOMO [69]
- TOMO3D [67]
- EMCLARITY [62]
- TOM TOOLBOX [62]
- NOVASTA [61]
- STOPGAP [52]
- TOM [49]
- CTFFIND3 [48]
- AIMLESS [45]
- SITUS [44]
- MDFF [39]
- BSOFT [38]
- PROTOMO [36]
- URO [36]
- IMOD, PEET [35]
- SPIDER, FREALIGN [33]
- EMFIT [32]
- CTFFIND3, RELION [31]
- SPARX [31]
- APPION [29]
- SIMPLE [29]
- EM3DR2 [28]
- SPRING [28]
- IHRSR [27]
- FREALIX [26]
- MPSA [26]
- IMIRS [24]
- SCIPION [24]
- IMAGIC, SPIDER [23]
- PRIISM/IVE [23]
- EMAN1 [22]
- ISOLDE [22]
- MRC [22]
- O [22]
- CTFFIND4 [21]
- SUBTOM [21]
- CHIMERA, SITUS [20]
- CTFTILT [20]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- J3DR [20]
- CHIMERA, MDFF [19]
- IMOD, TOMO3D [19]
- IMOD, TOMO3D, PEET [18]
- JALIGN [18]
- SERIALEM [18]
- TOMOALIGN [18]
- CHIMERA, COOT [17]
- I3 [17]
- MOLREP [17]
- SPIDER, RELION [17]
- EMAN1, EMAN2 [16]
- IMAGIC, CUSTOM, SPIDER [16]
- MULTI-PATH SA [16]
- UNBLUR, CTFFIND4, FREALIGN [16]
- COMET [15]
- CRYODRGN [15]
- IMOD, DYNAMO [15]
- POINTLESS [15]
- RELION, CTFFIND3 [15]
- CHIMERA, FLEX-EM [14]
- EMAN2, RELION [14]
- SPIDER, IMAGIC [14]
- DIREX [13]
- IMOD, RAPTOR, PROTOMO [13]
- PEET, RUBY-HELIX [13]
- REFMAC [13]
- EMAN, SPIDER [12]
- PHOELIX [12]
- PHOELIX, SUPRIM [12]
Microscope
- FEI TITAN KRIOS [30171]
- TFS KRIOS [8967]
- FEI TALOS ARCTICA [2505]
- TFS GLACIOS [1434]
- FEI POLARA 300 [1206]
- FEI TECNAI F20 [952]
- FEI TECNAI F30 [587]
- JEOL CRYO ARM 300 [573]
- FEI TITAN [517]
- FEI TECNAI ARCTICA [371]
- ZEISS LIBRA120PLUS [217]
- JEOL 3200FSC [201]
- FEI/PHILIPS CM200FEG [198]
- FEI TECNAI 20 [191]
- JEOL 2200FS [175]
- TFS TALOS [148]
- FEI/PHILIPS CM300FEG/T [114]
- JEOL 2010F [100]
- JEOL CRYO ARM 200 [64]
- JEOL 3100FFC [58]
- JEOL 3200FS [48]
- FEI TECNAI 12 [42]
- FEI TECNAI SPIRIT [38]
- JEOL 2100 [38]
- OTHER [37]
- JEOL 2100F [32]
- TFS TITAN THEMIS [29]
- FEI/PHILIPS CM120T [26]
- FEI/PHILIPS CM200FEG/ST [24]
- FEI/PHILIPS CM200T [24]
- JEOL 3000SFF [22]
- TFS TUNDRA [19]
- FEI MORGAGNI [17]
- JEOL 4000 [17]
- JEOL 4000EX [17]
- TFS TALOS F200C [16]
- JEOL 2200FSC [15]
- FEI/PHILIPS CM300FEG/HE [14]
- JEOL 1400/HR YPS FEG [11]
- FEI TECNAI 10 [9]
- FEI/PHILIPS CM200FEG/UT [9]
- JEOL KYOTO-3000SFF [8]
- FEI/PHILIPS CM300FEG/ST [7]
- JEOL 3100FEF [7]
- JEOL 1200EX [6]
- JEOL 1200EXII [5]
- FEI TECNAI SPHERA [4]
- FEI/PHILIPS EM420 [4]
- FEI/PHILIPS CM12 [3]
- HITACHI EF2000 [3]
- JEOL 1000EES [3]
- JEOL 1230 [3]
- JEOL 1400 [3]
- FEI/PHILIPS CM10 [2]
- JEOL 1200 [2]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- FEI/PHILIPS EM400 [1]
- JEOL 2010 [1]
- JEOL 2011 [1]
- SHUIMU TOTEM 300S [1]
Electron Source
- FIELD EMISSION GUN [48466]
- LAB6 [495]
- OTHER [261]
- TUNGSTEN HAIRPIN [56]
Film or detector model
- GATAN K3 6K X 4K [12708]
- GATAN K2 SUMMIT 4K X 4K [10552]
- GATAN K3 BIOQUANTUM 6K X 4K [10290]
- FEI FALCON IV 4K X 4K [4411]
- FEI FALCON III 4K X 4K [2796]
- GATAN K2 QUANTUM 4K X 4K [2128]
- FEI FALCON II 4K X 4K [1414]
- KODAK SO-163 FILM [914]
- TFS FALCON 4I 4K X 4K [827]
- GATAN ULTRASCAN 4000 4K X 4K [672]
- GATAN K3 BIOCONTINUUM 6K X 4K [439]
- GATAN K2 4K X 4K [225]
- TVIPS TEMCAM-F416 4K X 4K [201]
- GATAN K2 BASE 4K X 4K [192]
- OTHER [171]
- DIRECT ELECTRON DE-20 5K X 3K [138]
- FEI EAGLE 4K X 4K [130]
- GENERIC CCD [92]
- TVIPS TEMCAM-F415 4K X 4K [85]
- GATAN ULTRASCAN 1000 2K X 2K [83]
- FEI FALCON I 4K X 4K [81]
- GENERIC GATAN 4K X 4K [75]
- FEI CETA 4K X 4K [67]
- TVIPS TEMCAM-F816 8K X 8K [49]
- GENERIC TVIPS 4K X 4K [47]
- GENERIC GATAN [42]
- DIRECT ELECTRON DE-64 8K X 8K [40]
- GATAN MULTISCAN [40]
- DIRECT ELECTRON DE-16 4K X 4K [39]
- GATAN K2 IS 4K X 4K [39]
- DIRECT ELECTRON DE-12 4K X 3K [31]
- DIRECT ELECTRON APOLLO 4K X 4K [29]
- DIRECT ELECTRON DE-10 5K X 4K [20]
- TVIPS TEMCAM-F224 2K X 2K [20]
- FEI EAGLE 2K X 2K [17]
- DECTRIS SINGLA 1K X 1K [11]
- GENERIC GATAN 2K X 2K [11]
- AGFA SCIENTA FILM [10]
- GENERIC TVIPS [9]
- TVIPS TEMCAM-F216 2K X 2K [9]
- GENERIC CCD 2K X 2K [7]
- DECTRIS ELA 1K X 0.5K [6]
- GATAN ULTRASCAN 10000 10K X 10K [6]
- KODAK 4489 FILM [6]
- DECTRIS ARINA 0.2K X 0.2K [5]
- GATAN ALPINE 2.3K X 3.2K [5]
- GATAN ORIUS SC200 2K X 2K [5]
- GENERIC FILM [5]
- PROSCAN TEM-PIV 2K X 2K [1]
EMPIAR Experiment type
- EMDB [4]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [3]
- TILT SERIES [1]
External links
- UniProt [30636]
- PDB [29989]
- PDBe-Kb [27830]
- AlphaFold DB [25852]
- Pfam [24772]
- Gene Ontology [22888]
- InterPro [22207]
- ChEBI [17774]
- ChEMBL [16092]
- DrugBank [14308]
- Complex Portal [8720]
- EMPIAR [4029]
- SCOP2 [645]
- CATH [418]
- EMDB [4]
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8y71
Q-score: 0.508
Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE
To Be Published
Resolution: 2.36 Å
EM Method: Single-particle
Whyms C, Zhao Y, Addo-Yobo D, He H, Whittington AC, Trasanidou D, Salazar CRP, Staals RHJ, Li H
EMBO J (2025) 44 pp. 6919-6943 [ Pubmed: 41107544 DOI: doi:10.1038/s44318-025-00578-y ]
Resolution: 2.53 Å
EM Method: Single-particle
Whyms C, Zhao Y, Addo-Yobo D, He H, Whittington AC, Trasanidou D, Salazar CRP, Staals RHJ, Li H
EMBO J (2025) 44 pp. 6919-6943 [ Pubmed: 41107544 DOI: doi:10.1038/s44318-025-00578-y ]
Resolution: 2.31 Å
EM Method: Single-particle
Whyms C, Zhao Y, Addo-Yobo D, He H, Whittington AC, Trasanidou D, Salazar CRP, Staals RHJ, Li H
EMBO J (2025) 44 pp. 6919-6943 [ Pubmed: 41107544 DOI: doi:10.1038/s44318-025-00578-y ]
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 9ebt
Q-score: 0.664
Whyms C, Zhao Y, Addo-Yobo D, He H, Whittington AC, Trasanidou D, Salazar CRP, Staals RHJ, Li H
EMBO J (2025) 44 pp. 6919-6943 [ Pubmed: 41107544 DOI: doi:10.1038/s44318-025-00578-y ]
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9eka
Q-score: 0.351
Whyms C, Zhao Y, Addo-Yobo D, He H, Whittington AC, Trasanidou D, Salazar CRP, Staals RHJ, Li H
EMBO J (2025) 44 pp. 6919-6943 [ Pubmed: 41107544 DOI: doi:10.1038/s44318-025-00578-y ]
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 9mu7
Q-score: 0.393
Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache J-P, Murakami K
To Be Published
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 9l76
Q-score: 0.506
Zhu J, Zhang K, Gennis RB, Li J
To Be Published
Resolution: 2.74 Å
EM Method: Single-particle
Wilson WR, Byl FM, Laird N
Arch Otolaryngol (1980) 106 pp. 772-776 [ Pubmed: 7002129 DOI: doi:10.1001/archotol.1980.00790360050013 ]
Resolution: 3.43 Å
EM Method: Helical reconstruction
Fitted PDBs: 9laa
Q-score: 0.539
Li DN, Liu C
To Be Published
Filter By
Current Database
- EMDB [49277]
- EMPIAR [4]
Current status
- REL [49281]
Sample type
- Complex [39895]
- Protein [33634]
- Ligand [19058]
- RNA [4470]
- Virus [3731]
- DNA [3118]
- Sample [2907]
- Cellular component [2903]
- Cell [1551]
- Tissue [232]
- Other [222]
- Em label [2]
Organism
- Homo sapiens [17546]
- Synthetic construct [3554]
- Mus musculus [3149]
- Escherichia coli [2762]
- Severe acute respiratory syndrome coronavirus [2270]
- Saccharomyces cerevisiae [2265]
- Rattus norvegicus [1090]
- Escherichia coli [1052]
- Bos taurus [1019]
- Sus scrofa [856]
- Oryctolagus cuniculus [828]
- Xenopus laevis [788]
- Saccharomyces cerevisiae [746]
- Human immunodeficiency virus 1 [738]
- Lama glama [551]
- Arabidopsis thaliana [490]
- Chlamydomonas reinhardtii [419]
- Drosophila melanogaster [315]
- Mycolicibacterium smegmatis [313]
- Bacillus subtilis [250]
- Gallus gallus [227]
- Mycobacterium tuberculosis [224]
- Tetrahymena thermophila [195]
- Influenza a virus [193]
- Pseudomonas aeruginosa [170]
- Danio rerio [168]
- Enterobacteria phage m13 [166]
- Staphylococcus aureus [165]
- Thermus thermophilus [165]
- Escherichia coli [162]
- Vicugna pacos [160]
- Macaca mulatta [160]
- Chaetomium thermophilum [158]
- Caenorhabditis elegans [152]
- Saccharomyces cerevisiae [136]
- Leishmania tarentolae [136]
- Mycobacterium tuberculosis [133]
- Enterobacteria phage t4 [122]
- (no species) [121]
- Salmonella enterica [121]
- Chaetomium thermophilum [120]
- Bacillus subtilis [119]
- Bacillus sp. (strain ps3) [113]
- Synechocystis sp. pcc 6803 [109]
- Plasmodium falciparum [109]
- Schizosaccharomyces pombe [107]
- Plasmodium falciparum [98]
- Vibrio cholerae [96]
- Ovis aries [96]
- Escherichia virus t7 [95]
- Streptococcus pyogenes [92]
- Pseudomonas aeruginosa [92]
- Trypanosoma brucei [89]
- Mycoplasma pneumoniae [88]
- Hepatitis b virus [85]
- African swine fever virus [84]
- Mycolicibacterium smegmatis [82]
- Spinacia oleracea [78]
- Sus scrofa [76]
- Monkeypox virus [73]
- Cricetulus griseus [72]
- Chikungunya virus [70]
- Aequorea victoria [68]
- Human herpesvirus 1 [67]
- Human cytomegalovirus [67]
- Clostridioides difficile [67]
- Thermus thermophilus [66]
- Severe acute respiratory syndrome coronavirus [65]
- Middle east respiratory syndrome-related coronavirus [64]
- Thermoplasma acidophilum [64]
- Legionella pneumophila [64]
- Canis lupus [64]
- Schizosaccharomyces pombe [62]
- Saccharomyces cerevisiae [62]
- Trypanosoma brucei [61]
- Escherichia coli [61]
- Klebsiella pneumoniae [60]
- Salmonella enterica [60]
- Adeno-associated virus [59]
- Polytomella sp. pringsheim 198.80 [59]
- (no species) [58]
- Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [58]
- Dictyostelium discoideum [55]
- Enterovirus d [55]
- Neurospora crassa [55]
- Amanita phalloides [55]
- Eastern equine encephalitis virus [54]
- Enterobacteria phage t4 [54]
- Porphyridium purpureum [52]
- Parengyodontium album [51]
- Clostridium botulinum [50]
- Severe acute respiratory syndrome coronavirus [50]
- Enterovirus c [49]
- Dna molecule [49]
- Zika virus [47]
- Torpedo marmorata [47]
- Thermotoga maritima [46]
- Equus caballus [46]
- Streptomyces coelicolor [45]
- Human coronavirus hku1 [45]
EM Method
- Single-particle [41741]
- Subtomogram averaging [2822]
- Tomography [2314]
- Helical reconstruction [2259]
- Electron Crystallography [141]
Resolution
- < 2Å [365]
- ≥ 2Å and < 3Å [10285]
- ≥ 3Å and < 4Å [21173]
- ≥ 4Å and < 5Å [5205]
- ≥ 5Å and < 6Å [1236]
- ≥ 6Å and < 8Å [2562]
- ≥ 8Å and < 12Å [2286]
- ≥ 12Å and < 16Å [944]
- ≥ 16Å and < 20Å [631]
- ≥ 20Å and < 30Å [1310]
- ≥ 30Å [1630]
Model molecular weight
- 0-50 kDa [655]
- 50-100 kDa [1919]
- 100-250 kDa [9499]
- 250-500 kDa [7840]
- 500-1000 kDa [4551]
- 1-2 MDa [2115]
- 2-5 MDa [2243]
- 5-10 MDa [595]
- > 10 MDa [461]
Release Date
- 2026 [72]
- 2025 [11149]
- 2024 [9009]
- 2023 [7466]
- 2022 [5816]
- 2021 [4247]
- 2020 [3414]
- 2019 [2185]
- 2018 [1534]
- 2017 [981]
- 2016 [912]
- 2015 [488]
- 2014 [384]
- 2013 [391]
- 2012 [298]
- 2011 [199]
- 2010 [172]
- 2009 [166]
- 2008 [49]
- 2007 [121]
- 2006 [110]
- 2005 [44]
- 2004 [29]
- 2003 [38]
- 2002 [7]
Author by name
- Liu J [1618]
- Zhang Y [1589]
- Zhang X [1489]
- Wang Y [1471]
- Wang X [1207]
- Zhang M [1081]
- Liu Y [1063]
- Li Y [1053]
- Wang J [1014]
- Zhang Z [1003]
- Ren G [965]
- Li S [956]
- Li Z [952]
- Li X [926]
- Zhang J [835]
- Li J [809]
- Gao Y [769]
- Wang L [756]
- Zhang L [737]
- Wang S [729]
- Wang H [723]
- Chen Y [699]
- Liu S [673]
- Zhou ZH [638]
- Chen X [623]
- Shi Y [607]
- Wang C [607]
- Li H [606]
- Liu C [573]
- Zhang S [572]
- Liu X [569]
- Chen Z [566]
- Zhang K [564]
- Xu Y [559]
- Wang Q [556]
- Beckmann R [543]
- Liu L [540]
- Wu H [537]
- Liu Z [534]
- Ward AB [533]
- Zhu Y [532]
- Chen J [529]
- Zhang H [524]
- Yang Y [516]
- Jiang Y [511]
- Wang Z [502]
- Li D [497]
- Zhao Y [485]
- Xu J [477]
- Chiu W [471]
- Cheng J [468]
- Li W [467]
- Yang X [466]
- Liu H [458]
- Huang Y [455]
- Zhou L [452]
- Xu C [428]
- Hu Z [418]
- Zhang C [408]
- Wang P [393]
- Wang F [385]
- Zhang P [384]
- Wu J [381]
- Zhang R [379]
- Berninghausen O [373]
- Chen L [371]
- Zhou Q [371]
- Kotecha A [370]
- Zhao J [370]
- Cramer P [369]
- Sun Y [368]
- Baumeister W [366]
- Zhou Y [366]
- Brown A [365]
- Yu X [364]
- Rubinstein JL [363]
- Zhang W [363]
- Zhao X [361]
- Wang M [358]
- Rao Z [355]
- Wu C [354]
- Yu Z [351]
- Li L [343]
- Li M [342]
- Zhang B [341]
- Wu Y [339]
- Gang O [337]
- Wang W [336]
- Scheres SHW [334]
- Zhu X [334]
- Zhou J [332]
- Yang F [330]
- Yang H [330]
- Lu Y [328]
- Cheng Y [327]
- Sun L [327]
- Xu HE [317]
- Lyumkis D [316]
- Yuan Q [315]
- Skiniotis G [311]
Author by ORCID
- Ren G [936]
- Liu J [923]
- Zhou ZH [439]
- Chiu W [416]
- Zhang M [393]
- Brown A [348]
- Kotecha A [347]
- Beckmann R [313]
- Klinge S [295]
- Skiniotis G [295]
- Rubinstein JL [283]
- Ward AB [269]
- Kwong PD [258]
- Lyumkis D [253]
- Cheng Y [251]
- Gao N [247]
- Scheres SHW [244]
- Raunser S [240]
- Pilhofer M [237]
- Tao J [223]
- Bustamante C [223]
- Ashby PD [223]
- Kobilka BK [218]
- Hummer G [218]
- Plevka P [217]
- Xu HE [213]
- Amunts A [211]
- Andersen ES [205]
- Gao Y [205]
- Geary C [198]
- Subramaniam S [197]
- Gao GF [194]
- Li H [193]
- Cheng J [189]
- Gmeiner P [188]
- Papasergi-scott MM [188]
- He F [186]
- Zheng Q [186]
- Beck M [185]
- Briggs JAG [184]
- Fuzik T [181]
- Cramer P [180]
- Zeng J [180]
- Kishikawa JI [180]
- Vanden Broeck A [178]
- Borgnia MJ [177]
- Nureki O [177]
- Hurt E [176]
- Ranson NA [173]
- Kuhlbrandt W [170]
- Mahamid J [169]
- Williamson JR [169]
- Baker D [168]
- Hilger D [167]
- Zhang K [167]
- Kikkawa M [165]
- Gui M [164]
- Baumeister W [163]
- Huiskonen JT [163]
- Schmid MF [163]
- Panova O [162]
- Batebi H [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Wilson DN [160]
- Greber BJ [158]
- Denk T [158]
- Xia X [157]
- Bai XC [157]
- Rappsilber J [156]
- Itoh Y [156]
- Schulman BA [155]
- Wang X [155]
- Du J [155]
- Miotto MC [153]
- Stahlberg H [151]
- Zhang K [151]
- Zhang P [151]
- Venugopal H [148]
- Plitzko JM [148]
- Xia N [146]
- Edwards RJ [146]
- Nogales E [144]
- Engel BD [144]
- Zhang X [143]
- Goedert M [143]
- Torres JL [142]
- Grigorieff N [141]
- Xu J [141]
- Li N [140]
- Conway JF [140]
- Chai P [139]
- Zhang R [139]
- Agard DA [138]
- Novacek J [138]
- Egelman EH [137]
- Schoehn G [136]
- Robinson CV [135]
- Yang M [135]
- Jiang W [134]
Journal
- NAT COMMUN [9249]
- TO BE PUBLISHED [4933]
- NATURE [4308]
- NAT STRUCT MOL BIOL [2902]
- PNAS [2832]
- SCIENCE [2572]
- CELL [2122]
- BIORXIV [2060]
- ELIFE [1614]
- MOL CELL [1602]
- SCI ADV [1595]
- STRUCTURE [1295]
- NUCLEIC ACIDS RES [942]
- CELL REP [908]
- EMBO J [695]
- CELL RES [652]
- J VIROL [597]
- COMMUN BIOL [562]
- J MOL BIOL [469]
- NAT MICROBIOL [448]
- CELL DISCOV [420]
- J BIOL CHEM [413]
- NAT CHEM BIOL [389]
- PLOS PATHOG [369]
- ACTA CRYSTALLOGR D STRUCT BIOL [337]
- J STRUCT BIOL [307]
- NAT METHODS [282]
- NAT PLANTS [221]
- SCI REP [221]
- MBIO [210]
- PLOS BIOL [190]
- EMBO REP [189]
- CELL HOST MICROBE [177]
- J CELL BIOL [176]
- J AM CHEM SOC [164]
- PROTEIN CELL [145]
- VIRUSES [124]
- PROTEIN SCI [122]
- IMMUNITY [121]
- NEURON [103]
- IUCRJ [96]
- INT J MOL SCI [93]
- LIFE SCI ALLIANCE [92]
- PLOS ONE [88]
- ISCIENCE [84]
- J STRUCT BIOL X [83]
- PNAS NEXUS [81]
- CURR BIOL [75]
- DEV CELL [75]
- BIOCHEMISTRY [74]
- MOL BIOL CELL [72]
- ACS NANO [71]
- J MED CHEM [70]
- COMMUN CHEM [68]
- SCI TRANSL MED [66]
- RES SQ [62]
- NPJ VACCINES [59]
- SIGNAL TRANSDUCT TARGET THER [58]
- ADV SCI [54]
- BLOOD [54]
- ACTA NEUROPATHOL [53]
- FRONT ENDOCRINOL [53]
- ANGEW CHEM INT ED ENGL [51]
- NAT NANOTECHNOL [49]
- VIROLOGY [48]
- INT J BIOL MACROMOL [47]
- BIOMOLECULES [45]
- NAT CELL BIOL [45]
- RNA [44]
- NAT CATAL [43]
- MOL PLANT [41]
- BIOCHEM BIOPHYS RES COMMUN [40]
- J CLIN INV [40]
- FEBS LETT [39]
- SCI IMMUNOL [39]
- FEBS J [38]
- FRONT MOL BIOSCI [37]
- NAT CHEM [37]
- J CELL SCI [35]
- EMERG MICROBES INFECT [34]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- MOL MICROBIOL [29]
- GENES DEV [27]
- NATL SCI REV [27]
- PLANT CELL [27]
- PLANT COMMUN. [27]
- J EXP MED [26]
- BIOCHEM J [25]
- FRONT IMMUNOL [24]
- FRONT MICROBIOL [24]
- NAT MATER [24]
- OPEN BIOL [23]
- BIOPHYS J [22]
- CELL DEATH DIFFER. [22]
- HLIFE [22]
- SCI BULL (BEIJING) [22]
- ACS CENT SCI [21]
- ACS CHEM BIOL [21]
- J.MOL.CELL.CARDIOL. [21]
- SMALL [21]
Software
- RELION [12370]
- CRYOSPARC [11580]
- CTFFIND [2169]
- GCTF [1389]
- IMOD [958]
- SPIDER [631]
- CISTEM [454]
- FREALIGN [421]
- IPET [416]
- WARP [397]
- TOMOCTF [383]
- CHIMERA [348]
- DYNAMO [309]
- EMAN2 [272]
- EMAN [251]
- COOT [246]
- PEET [232]
- PHENIX [187]
- JSPR [142]
- PYTOM [123]
- XMIPP [120]
- AUTO3DEM [119]
- MATLAB [116]
- UCSF CHIMERA [112]
- SPHIRE [107]
- CRYOLO [94]
- UCSF CHIMERAX [88]
- IMAGIC [87]
- AV3 [82]
- NOVACTF [81]
- CTFPHASEFLIP [69]
- ETOMO [69]
- TOMO3D [67]
- EMCLARITY [62]
- TOM TOOLBOX [62]
- NOVASTA [61]
- STOPGAP [52]
- TOM [49]
- CTFFIND3 [48]
- AIMLESS [45]
- SITUS [44]
- MDFF [39]
- BSOFT [38]
- PROTOMO [36]
- URO [36]
- IMOD, PEET [35]
- SPIDER, FREALIGN [33]
- EMFIT [32]
- CTFFIND3, RELION [31]
- SPARX [31]
- APPION [29]
- SIMPLE [29]
- EM3DR2 [28]
- SPRING [28]
- IHRSR [27]
- FREALIX [26]
- MPSA [26]
- IMIRS [24]
- SCIPION [24]
- IMAGIC, SPIDER [23]
- PRIISM/IVE [23]
- EMAN1 [22]
- ISOLDE [22]
- MRC [22]
- O [22]
- CTFFIND4 [21]
- SUBTOM [21]
- CHIMERA, SITUS [20]
- CTFTILT [20]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- J3DR [20]
- CHIMERA, MDFF [19]
- IMOD, TOMO3D [19]
- IMOD, TOMO3D, PEET [18]
- JALIGN [18]
- SERIALEM [18]
- TOMOALIGN [18]
- CHIMERA, COOT [17]
- I3 [17]
- MOLREP [17]
- SPIDER, RELION [17]
- EMAN1, EMAN2 [16]
- IMAGIC, CUSTOM, SPIDER [16]
- MULTI-PATH SA [16]
- UNBLUR, CTFFIND4, FREALIGN [16]
- COMET [15]
- CRYODRGN [15]
- IMOD, DYNAMO [15]
- POINTLESS [15]
- RELION, CTFFIND3 [15]
- CHIMERA, FLEX-EM [14]
- EMAN2, RELION [14]
- SPIDER, IMAGIC [14]
- DIREX [13]
- IMOD, RAPTOR, PROTOMO [13]
- PEET, RUBY-HELIX [13]
- REFMAC [13]
- EMAN, SPIDER [12]
- PHOELIX [12]
- PHOELIX, SUPRIM [12]
Microscope
- FEI TITAN KRIOS [30171]
- TFS KRIOS [8967]
- FEI TALOS ARCTICA [2505]
- TFS GLACIOS [1434]
- FEI POLARA 300 [1206]
- FEI TECNAI F20 [952]
- FEI TECNAI F30 [587]
- JEOL CRYO ARM 300 [573]
- FEI TITAN [517]
- FEI TECNAI ARCTICA [371]
- ZEISS LIBRA120PLUS [217]
- JEOL 3200FSC [201]
- FEI/PHILIPS CM200FEG [198]
- FEI TECNAI 20 [191]
- JEOL 2200FS [175]
- TFS TALOS [148]
- FEI/PHILIPS CM300FEG/T [114]
- JEOL 2010F [100]
- JEOL CRYO ARM 200 [64]
- JEOL 3100FFC [58]
- JEOL 3200FS [48]
- FEI TECNAI 12 [42]
- FEI TECNAI SPIRIT [38]
- JEOL 2100 [38]
- OTHER [37]
- JEOL 2100F [32]
- TFS TITAN THEMIS [29]
- FEI/PHILIPS CM120T [26]
- FEI/PHILIPS CM200FEG/ST [24]
- FEI/PHILIPS CM200T [24]
- JEOL 3000SFF [22]
- TFS TUNDRA [19]
- FEI MORGAGNI [17]
- JEOL 4000 [17]
- JEOL 4000EX [17]
- TFS TALOS F200C [16]
- JEOL 2200FSC [15]
- FEI/PHILIPS CM300FEG/HE [14]
- JEOL 1400/HR YPS FEG [11]
- FEI TECNAI 10 [9]
- FEI/PHILIPS CM200FEG/UT [9]
- JEOL KYOTO-3000SFF [8]
- FEI/PHILIPS CM300FEG/ST [7]
- JEOL 3100FEF [7]
- JEOL 1200EX [6]
- JEOL 1200EXII [5]
- FEI TECNAI SPHERA [4]
- FEI/PHILIPS EM420 [4]
- FEI/PHILIPS CM12 [3]
- HITACHI EF2000 [3]
- JEOL 1000EES [3]
- JEOL 1230 [3]
- JEOL 1400 [3]
- FEI/PHILIPS CM10 [2]
- JEOL 1200 [2]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- FEI/PHILIPS EM400 [1]
- JEOL 2010 [1]
- JEOL 2011 [1]
- SHUIMU TOTEM 300S [1]
Electron Source
- FIELD EMISSION GUN [48466]
- LAB6 [495]
- OTHER [261]
- TUNGSTEN HAIRPIN [56]
Film or detector model
- GATAN K3 6K X 4K [12708]
- GATAN K2 SUMMIT 4K X 4K [10552]
- GATAN K3 BIOQUANTUM 6K X 4K [10290]
- FEI FALCON IV 4K X 4K [4411]
- FEI FALCON III 4K X 4K [2796]
- GATAN K2 QUANTUM 4K X 4K [2128]
- FEI FALCON II 4K X 4K [1414]
- KODAK SO-163 FILM [914]
- TFS FALCON 4I 4K X 4K [827]
- GATAN ULTRASCAN 4000 4K X 4K [672]
- GATAN K3 BIOCONTINUUM 6K X 4K [439]
- GATAN K2 4K X 4K [225]
- TVIPS TEMCAM-F416 4K X 4K [201]
- GATAN K2 BASE 4K X 4K [192]
- OTHER [171]
- DIRECT ELECTRON DE-20 5K X 3K [138]
- FEI EAGLE 4K X 4K [130]
- GENERIC CCD [92]
- TVIPS TEMCAM-F415 4K X 4K [85]
- GATAN ULTRASCAN 1000 2K X 2K [83]
- FEI FALCON I 4K X 4K [81]
- GENERIC GATAN 4K X 4K [75]
- FEI CETA 4K X 4K [67]
- TVIPS TEMCAM-F816 8K X 8K [49]
- GENERIC TVIPS 4K X 4K [47]
- GENERIC GATAN [42]
- DIRECT ELECTRON DE-64 8K X 8K [40]
- GATAN MULTISCAN [40]
- DIRECT ELECTRON DE-16 4K X 4K [39]
- GATAN K2 IS 4K X 4K [39]
- DIRECT ELECTRON DE-12 4K X 3K [31]
- DIRECT ELECTRON APOLLO 4K X 4K [29]
- DIRECT ELECTRON DE-10 5K X 4K [20]
- TVIPS TEMCAM-F224 2K X 2K [20]
- FEI EAGLE 2K X 2K [17]
- DECTRIS SINGLA 1K X 1K [11]
- GENERIC GATAN 2K X 2K [11]
- AGFA SCIENTA FILM [10]
- GENERIC TVIPS [9]
- TVIPS TEMCAM-F216 2K X 2K [9]
- GENERIC CCD 2K X 2K [7]
- DECTRIS ELA 1K X 0.5K [6]
- GATAN ULTRASCAN 10000 10K X 10K [6]
- KODAK 4489 FILM [6]
- DECTRIS ARINA 0.2K X 0.2K [5]
- GATAN ALPINE 2.3K X 3.2K [5]
- GATAN ORIUS SC200 2K X 2K [5]
- GENERIC FILM [5]
- PROSCAN TEM-PIV 2K X 2K [1]
EMPIAR Experiment type
- EMDB [4]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [3]
- TILT SERIES [1]
External links
- UniProt [30636]
- PDB [29989]
- PDBe-Kb [27830]
- AlphaFold DB [25852]
- Pfam [24772]
- Gene Ontology [22888]
- InterPro [22207]
- ChEBI [17774]
- ChEMBL [16092]
- DrugBank [14308]
- Complex Portal [8720]
- EMPIAR [4029]
- SCOP2 [645]
- CATH [418]
- EMDB [4]