Electron Microscopy Data Bank

Reconstructed cryo soft X-ray tomography dataset of a treated NIH-3T3 cell with corresponding correlated cryo-3D-SIM channels

Release date: Nov. 26, 2021
Dataset size: 10.1 GB
Experiment type: CLXM

Groen J, Palanca A, Aires A, Conesa JJ, Maestro D, Rehbein S, Harkiolaki M, Villar AV, Cortajarena AL, Pereiro E

Chem Sci (2021) 12 pp. 15090-15103 [ DOI: 10.1039/d1sc04183e Pubmed: 34909150 ]

Image sets:

Stitched and correlated 3D reconstruction of a NIH-3T3 cell

EMPIAR-10615

Cryo Soft X-ray data for tetraspeck correlation

Release date: Nov. 1, 2021
Dataset size: 15.1 GB
Experiment type: CLXM

Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish TM, Koronfel MA, Cortajarena AL, Dobbie IM, Pereiro E, Harkiolaki M

Nat Protoc (2021) 16 pp. 2851-2885 [ DOI: 10.1038/s41596-021-00522-4 Pubmed: 33990802 ]

Image sets:

Cryo Soft X-ray tomography of NIH-3T3 cells with Tetraspeck as correlative fiducial markers
Cryo soft X-ray tomography of Tetraspecks on Quantifoil
Cryo Soft X-ray tomography of NIH-3T3 cells for mitochondrial correlation

EMPIAR-10624

Cryo Soft X-ray data for tetraspeck correlation

Release date: Feb. 12, 2021
Dataset size: 6.8 GB
Experiment type: CLXM

Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish TM, Koronfel MA, Cortajarena AL, Dobbie IM, Pereiro E, Harkiolaki M

Nat Protoc (2021) 16 pp. 2851-2885 [ DOI: 10.1038/s41596-021-00522-4 Pubmed: 33990802 ]

Image sets:

Cryo Soft X-ray tomography of NIH-3T3 cells with Tetraspeck as correlative fiducial markers
Cryo soft X-ray tomography reconstruction of NIH-3T3 cells
Cryo Soft X-ray tomography of Tetraspeck on Quantifoil

EMPIAR-10412

Soft X-ray Tomography of mock-infected U2OS cells

Release date: June 30, 2020
Dataset size: 2.3 GB
Experiment type: CLXM

Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M

Cell (2020) 182 pp. 515-530.e17 [ DOI: 10.1016/j.cell.2020.05.051 Pubmed: 32610083 ]

Image sets:

Tomogram of reovirus mock-infected U2OS cells (Area1)

EMPIAR-10413

Soft X-ray Tomography of mock-infected U2OS cells

Release date: June 30, 2020
Dataset size: 2.3 GB
Experiment type: CLXM

Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M

Cell (2020) 182 pp. 515-530.e17 [ DOI: 10.1016/j.cell.2020.05.051 Pubmed: 32610083 ]

Image sets:

Tomogram of reovirus mock-infected U2OS cells (Area 2)

EMPIAR-10414

Soft X-ray Tomography of mock-infected U2OS cells

Release date: June 30, 2020
Dataset size: 1.2 GB
Experiment type: CLXM

Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M

Cell (2020) 182 pp. 515-530.e17 [ DOI: 10.1016/j.cell.2020.05.051 Pubmed: 32610083 ]

Image sets:

Tomogram of reovirus infected U2OS cells 1h post-infection (Area1)

EMPIAR-10415

Soft X-ray Tomography of mock-infected U2OS cells

Release date: June 30, 2020
Dataset size: 2.3 GB
Experiment type: CLXM

Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M

Cell (2020) 182 pp. 515-530.e17 [ DOI: 10.1016/j.cell.2020.05.051 Pubmed: 32610083 ]

Image sets:

Tomogram of reovirus infected U2OS cells 1h post-infection (Area 2)

EMPIAR-10416

Soft X-ray Tomography of mock-infected U2OS cells

Release date: June 30, 2020
Dataset size: 1.2 GB
Experiment type: CLXM

Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M

Cell (2020) 182 pp. 515-530.e17 [ DOI: 10.1016/j.cell.2020.05.051 Pubmed: 32610083 ]

Image sets:

Tomogram of reovirus infected U2OS cells 2h post-infection (Area 2)

EMPIAR-10417

Soft X-ray Tomography of mock-infected U2OS cells

Release date: June 30, 2020
Dataset size: 1.2 GB
Experiment type: CLXM

Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M

Cell (2020) 182 pp. 515-530.e17 [ DOI: 10.1016/j.cell.2020.05.051 Pubmed: 32610083 ]

Image sets:

Tomogram of reovirus infected U2OS cells 2h post-infection (Area 1)

EMPIAR-10418

Soft X-ray Tomography of mock-infected U2OS cells

Release date: June 30, 2020
Dataset size: 1.2 GB
Experiment type: CLXM

Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M

Cell (2020) 182 pp. 515-530.e17 [ DOI: 10.1016/j.cell.2020.05.051 Pubmed: 32610083 ]

Image sets:

Tomogram of reovirus-infected U2OS cells 4h post-infection (Area 1)

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