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4D-STEM

Filter By

Current Database

  • EMDB [81]
  • EMPIAR [3]

Current status

  • REL [84]

Sample type

  • Complex [71]
  • Protein [57]
  • Ligand [42]
  • RNA [22]
  • Virus [8]
  • Cellular component [6]
  • DNA [1]

Organism

  • Homo sapiens [27]
  • Geobacillus stearothermophilus [22]
  • Bos taurus [8]
  • Saccharomyces cerevisiae [6]
  • Listeria monocytogenes [5]
  • Enterobacteria phage t4 [4]
  • Enterovirus d [4]
  • Thermoplasma acidophilum [3]
  • Pseudomonas phage pp7 [2]
  • Listeria monocytogenes [2]
  • Escherichia coli [2]
  • Thermus phage philo [2]
  • Sepahanvirus gn1 [2]
  • Synthetic construct [2]
  • Escherichia coli [2]
  • Mus musculus [1]
  • Klebsiella aerogenes [1]
  • Human cytomegalovirus [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Dna molecule [1]
  • Brucella abortus [1]
  • Myroides profundi [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [77]
  • Tomography [4]

Resolution

  • ≥ 2Å and < 3Å [27]
  • ≥ 3Å and < 4Å [37]
  • ≥ 4Å and < 5Å [6]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [4]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [2]
  • 100-250 kDa [33]
  • 250-500 kDa [7]
  • 500-1000 kDa [10]
  • 1-2 MDa [6]
  • 5-10 MDa [4]

Release Date

  • 2026 [42]
  • 2025 [27]
  • 2024 [15]

Author by name

  • Zhang J [23]
  • Bhoge BA [22]
  • Degenhardt MFS [22]
  • Lee Y-T [22]
  • Skeparnias I [22]
  • Stagno JR [22]
  • Wang Y-X [22]
  • Chen SY [12]
  • Dyba MA [12]
  • Lee YT [12]
  • Tarasov SG [12]
  • Wang YX [12]
  • Chen S-Y [10]
  • Barrie KR [9]
  • Dominguez R [9]
  • Fregoso FE [8]
  • Saks AJ [8]
  • Amaro RE [6]
  • Karasmanis EP [6]
  • Kendrick AA [6]
  • Leschziner AE [6]
  • Ma W [6]
  • Nguyen KHV [6]
  • Reck-peterson SL [6]
  • Yang Z [6]
  • Banerjea A [5]
  • Cattoglio C [5]
  • Cote J [5]
  • Florez Ariza Aj [5]
  • Fradet-turcotte A [5]
  • Galloy M [5]
  • Garda V [5]
  • Humbert J [5]
  • Lachance C [5]
  • Lambert JP [5]
  • Linde-garelli KY [5]
  • Lobanovska M [5]
  • Lopez-ayala I [5]
  • Luo J [5]
  • Mameri A [5]
  • Martinez-bond EA [5]
  • Nogales E [5]
  • Portnoy DA [5]
  • Qiu L [5]
  • Ranish JA [5]
  • Rogala KB [5]
  • Sabatini DM [5]
  • Sudarshan D [5]
  • Valenstein ML [5]
  • Williams AH [5]
  • Wranik M [5]
  • Yu Z [5]
  • Zhao Z [5]
  • Cheng J [4]
  • Edel KM [4]
  • Elbaum M [4]
  • Huang R [4]
  • Huang RK [4]
  • Kirchweger P [4]
  • Krug PW [4]
  • Kwong PD [4]
  • Lang ZC [4]
  • Lei H [4]
  • Liu X [4]
  • Morton AJ [4]
  • Moss DL [4]
  • Pierson TC [4]
  • Pletnev S [4]
  • Ruckwardt TJ [4]
  • Seifer S [4]
  • Shen C [4]
  • Shen CH [4]
  • Zhou T [4]
  • Chivukula RR [3]
  • Choi Y [3]
  • Delarue M [3]
  • Gross JD [3]
  • Guerrero-ferreira RCG [3]
  • Kube MK [3]
  • Küçükoğlu BK [3]
  • Lalgudi PV [3]
  • Lau KL [3]
  • Leidl MLL [3]
  • Missoury S [3]
  • Mohammed IM [3]
  • Myasnikov AM [3]
  • Müller-caspary KMC [3]
  • Nazarov SN [3]
  • Ophus CO [3]
  • Radecke JR [3]
  • Ribet SR [3]
  • Sachse CS [3]
  • Stahlberg HS [3]
  • Varnavides GV [3]
  • Asadollahi K [2]
  • Chen M [2]
  • Chu N [2]
  • Cole PA [2]
  • Congreve S [2]
  • Dramicanin M [2]

Author by ORCID

  • Zhang J [22]
  • Stagno JR [22]
  • Degenhardt MFS [22]
  • Lee YT [12]
  • Wang YX [12]
  • Bhoge BA [10]
  • Lee Y-T [10]
  • Wang Y-X [10]
  • Skeparnias I [10]
  • Barrie KR [9]
  • Dominguez R [9]
  • Fregoso FE [8]
  • Saks AJ [8]
  • Karasmanis EP [6]
  • Ma W [6]
  • Reck-peterson SL [6]
  • Leschziner AE [6]
  • Amaro RE [6]
  • Kendrick AA [6]
  • Nguyen KHV [6]
  • Rogala KB [5]
  • Cattoglio C [5]
  • Cote J [5]
  • Ranish JA [5]
  • Mameri A [5]
  • Valenstein ML [5]
  • Yu Z [5]
  • Nogales E [5]
  • Banerjea A [5]
  • Yang Z [5]
  • Williams AH [5]
  • Zhao Z [5]
  • Lambert JP [5]
  • Humbert J [5]
  • Sabatini DM [5]
  • Lobanovska M [5]
  • Garda V [5]
  • Fradet-turcotte A [5]
  • Sudarshan D [5]
  • Martinez-bond EA [5]
  • Galloy M [5]
  • Portnoy DA [5]
  • Florez Ariza Aj [5]
  • Luo J [5]
  • Linde-garelli KY [5]
  • Qiu L [5]
  • Lopez-ayala I [5]
  • Lachance C [5]
  • Moss DL [4]
  • Elbaum M [4]
  • Kirchweger P [4]
  • Cheng J [4]
  • Ruckwardt TJ [4]
  • Seifer S [4]
  • Zhou T [4]
  • Lei H [4]
  • Krug PW [4]
  • Kwong PD [4]
  • Edel KM [4]
  • Morton AJ [4]
  • Lalgudi PV [3]
  • Venugopal H [2]
  • Gray NS [2]
  • Taylor MS [2]
  • Cole PA [2]
  • Chu N [2]
  • Ficarro SB [2]
  • Chen M [2]
  • Shi Y [2]
  • Lovell S [2]
  • Yu Y [2]
  • O'meara TR [2]
  • Palanski BA [2]
  • Lupton CJ [2]
  • Mondal D [2]
  • Xiang Y [2]
  • Kropp A [2]
  • Grinter R [2]
  • Li X [2]
  • Knott GJ [2]
  • Shen Y [2]
  • Spicer BA [2]
  • Fox DR [2]
  • Sali A [2]
  • Liu L [2]
  • Van Eeuwen T [2]
  • Marto JA [2]
  • Li S [2]
  • Hennink M [2]
  • Xibinaku K [2]
  • Li T [2]
  • Congreve S [2]
  • Kondo KT [2]
  • Matas K [2]
  • Ingham DJ [2]
  • Miller BD [2]
  • Freund D [2]
  • Samuels I [2]
  • Lee MJ [2]
  • Holbaur ELF [1]

Journal

  • TO BE PUBLISHED [39]
  • NAT COMMUN [15]
  • SCIENCE [7]
  • NAT STRUCT MOL BIOL [6]
  • ACTA CRYSTALLOGR D STRUCT BIOL [4]
  • COMMUN BIOL [4]
  • MICROSC MICROANAL [4]
  • NATURE [4]
  • BIORXIV [3]
  • MBIO [1]
  • NAT METHODS [1]

Software

  • CRYOSPARC [25]
  • MATLAB [4]
  • PRIISM/IVE [4]
  • CTFFIND [2]
  • RELION [1]

Microscope

  • FEI TALOS ARCTICA [28]
  • TFS KRIOS [23]
  • FEI TITAN KRIOS [17]
  • FEI TECNAI F20 [4]
  • TFS TITAN THEMIS [3]
  • FEI TECNAI F30 [2]
  • TFS GLACIOS [2]
  • FEI POLARA 300 [1]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [81]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [36]
  • GATAN K3 6K X 4K [26]
  • GATAN K2 SUMMIT 4K X 4K [7]
  • DECTRIS ARINA 0.2K X 0.2K [4]
  • FEI FALCON IV 4K X 4K [3]
  • OTHER [3]
  • FEI FALCON I 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [3]

EMPIAR Image category

  • DIFFRACTION IMAGES [3]

External links

  • PDB [80]
  • UniProt [55]
  • AlphaFold DB [47]
  • ChEBI [42]
  • DrugBank [40]
  • PDBe-Kb [38]
  • Gene Ontology [37]
  • Pfam [28]
  • InterPro [25]
  • ChEMBL [19]
  • EMPIAR [17]
  • Complex Portal [8]
  • EMDB [3]
Sort by: Download
Showing 1 - 10 of 84. Page 1 of 9
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EMD-81077
Download Map
3D View
Human fatty acid synthase conformational state 2
CryoEM
Release date: July 15, 2026
Resolution: 7.29 Å
EM Method: Single-particle

Xu XX, Jian LF

To Be Published

EMD-70938
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5 leader sub-conformation 1 of tRNA anticodon arm tilted
CryoEM
Release date: June 10, 2026
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 9owo
Q-score: 0.429

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70939
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5 leader sub-conformation 2 of tRNA anticodon arm tilted
CryoEM
Release date: June 10, 2026
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 9owp
Q-score: 0.427

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70942
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P holoenzyme in 5 mM Mg2
CryoEM
Release date: June 10, 2026
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 9ows
Q-score: 0.394

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70943
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with precursor tRNA in 5 mM Ca2
CryoEM
Release date: June 10, 2026
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 9owt
Q-score: 0.446

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70944
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with precursor tRNA in 1 mM Ca2
CryoEM
Release date: June 10, 2026
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 9owu
Q-score: 0.402

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70945
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with mature tRNA in 5 mM Ca2
CryoEM
Release date: June 10, 2026
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 9owv
Q-score: 0.389

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70946
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with the precursor tRNA with non-complementary 5 leader
CryoEM
Release date: June 10, 2026
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 9oww
Q-score: 0.437

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70947
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with the precursor tRNA with loop-back 5 leader sub-conformation 1 of tRNA anticodon arm tilted
CryoEM
Release date: June 10, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9owx
Q-score: 0.466

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70948
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with the precursor tRNA with loop-back 5 leader sub-conformation 2 of tRNA anticodon arm tilted
CryoEM
Release date: June 10, 2026
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 9owy
Q-score: 0.474

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

Sort by: Download
Showing 1 - 10 of 84. Page 1 of 9
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [81]
  • EMPIAR [3]

Current status

  • REL [84]

Sample type

  • Complex [71]
  • Protein [57]
  • Ligand [42]
  • RNA [22]
  • Virus [8]
  • Cellular component [6]
  • DNA [1]

Organism

  • Homo sapiens [27]
  • Geobacillus stearothermophilus [22]
  • Bos taurus [8]
  • Saccharomyces cerevisiae [6]
  • Listeria monocytogenes [5]
  • Enterobacteria phage t4 [4]
  • Enterovirus d [4]
  • Thermoplasma acidophilum [3]
  • Pseudomonas phage pp7 [2]
  • Listeria monocytogenes [2]
  • Escherichia coli [2]
  • Thermus phage philo [2]
  • Sepahanvirus gn1 [2]
  • Synthetic construct [2]
  • Escherichia coli [2]
  • Mus musculus [1]
  • Klebsiella aerogenes [1]
  • Human cytomegalovirus [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Dna molecule [1]
  • Brucella abortus [1]
  • Myroides profundi [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [77]
  • Tomography [4]

Resolution

  • ≥ 2Å and < 3Å [27]
  • ≥ 3Å and < 4Å [37]
  • ≥ 4Å and < 5Å [6]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [4]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [2]
  • 100-250 kDa [33]
  • 250-500 kDa [7]
  • 500-1000 kDa [10]
  • 1-2 MDa [6]
  • 5-10 MDa [4]

Release Date

  • 2026 [42]
  • 2025 [27]
  • 2024 [15]

Author by name

  • Zhang J [23]
  • Bhoge BA [22]
  • Degenhardt MFS [22]
  • Lee Y-T [22]
  • Skeparnias I [22]
  • Stagno JR [22]
  • Wang Y-X [22]
  • Chen SY [12]
  • Dyba MA [12]
  • Lee YT [12]
  • Tarasov SG [12]
  • Wang YX [12]
  • Chen S-Y [10]
  • Barrie KR [9]
  • Dominguez R [9]
  • Fregoso FE [8]
  • Saks AJ [8]
  • Amaro RE [6]
  • Karasmanis EP [6]
  • Kendrick AA [6]
  • Leschziner AE [6]
  • Ma W [6]
  • Nguyen KHV [6]
  • Reck-peterson SL [6]
  • Yang Z [6]
  • Banerjea A [5]
  • Cattoglio C [5]
  • Cote J [5]
  • Florez Ariza Aj [5]
  • Fradet-turcotte A [5]
  • Galloy M [5]
  • Garda V [5]
  • Humbert J [5]
  • Lachance C [5]
  • Lambert JP [5]
  • Linde-garelli KY [5]
  • Lobanovska M [5]
  • Lopez-ayala I [5]
  • Luo J [5]
  • Mameri A [5]
  • Martinez-bond EA [5]
  • Nogales E [5]
  • Portnoy DA [5]
  • Qiu L [5]
  • Ranish JA [5]
  • Rogala KB [5]
  • Sabatini DM [5]
  • Sudarshan D [5]
  • Valenstein ML [5]
  • Williams AH [5]
  • Wranik M [5]
  • Yu Z [5]
  • Zhao Z [5]
  • Cheng J [4]
  • Edel KM [4]
  • Elbaum M [4]
  • Huang R [4]
  • Huang RK [4]
  • Kirchweger P [4]
  • Krug PW [4]
  • Kwong PD [4]
  • Lang ZC [4]
  • Lei H [4]
  • Liu X [4]
  • Morton AJ [4]
  • Moss DL [4]
  • Pierson TC [4]
  • Pletnev S [4]
  • Ruckwardt TJ [4]
  • Seifer S [4]
  • Shen C [4]
  • Shen CH [4]
  • Zhou T [4]
  • Chivukula RR [3]
  • Choi Y [3]
  • Delarue M [3]
  • Gross JD [3]
  • Guerrero-ferreira RCG [3]
  • Kube MK [3]
  • Küçükoğlu BK [3]
  • Lalgudi PV [3]
  • Lau KL [3]
  • Leidl MLL [3]
  • Missoury S [3]
  • Mohammed IM [3]
  • Myasnikov AM [3]
  • Müller-caspary KMC [3]
  • Nazarov SN [3]
  • Ophus CO [3]
  • Radecke JR [3]
  • Ribet SR [3]
  • Sachse CS [3]
  • Stahlberg HS [3]
  • Varnavides GV [3]
  • Asadollahi K [2]
  • Chen M [2]
  • Chu N [2]
  • Cole PA [2]
  • Congreve S [2]
  • Dramicanin M [2]

Author by ORCID

  • Zhang J [22]
  • Stagno JR [22]
  • Degenhardt MFS [22]
  • Lee YT [12]
  • Wang YX [12]
  • Bhoge BA [10]
  • Lee Y-T [10]
  • Wang Y-X [10]
  • Skeparnias I [10]
  • Barrie KR [9]
  • Dominguez R [9]
  • Fregoso FE [8]
  • Saks AJ [8]
  • Karasmanis EP [6]
  • Ma W [6]
  • Reck-peterson SL [6]
  • Leschziner AE [6]
  • Amaro RE [6]
  • Kendrick AA [6]
  • Nguyen KHV [6]
  • Rogala KB [5]
  • Cattoglio C [5]
  • Cote J [5]
  • Ranish JA [5]
  • Mameri A [5]
  • Valenstein ML [5]
  • Yu Z [5]
  • Nogales E [5]
  • Banerjea A [5]
  • Yang Z [5]
  • Williams AH [5]
  • Zhao Z [5]
  • Lambert JP [5]
  • Humbert J [5]
  • Sabatini DM [5]
  • Lobanovska M [5]
  • Garda V [5]
  • Fradet-turcotte A [5]
  • Sudarshan D [5]
  • Martinez-bond EA [5]
  • Galloy M [5]
  • Portnoy DA [5]
  • Florez Ariza Aj [5]
  • Luo J [5]
  • Linde-garelli KY [5]
  • Qiu L [5]
  • Lopez-ayala I [5]
  • Lachance C [5]
  • Moss DL [4]
  • Elbaum M [4]
  • Kirchweger P [4]
  • Cheng J [4]
  • Ruckwardt TJ [4]
  • Seifer S [4]
  • Zhou T [4]
  • Lei H [4]
  • Krug PW [4]
  • Kwong PD [4]
  • Edel KM [4]
  • Morton AJ [4]
  • Lalgudi PV [3]
  • Venugopal H [2]
  • Gray NS [2]
  • Taylor MS [2]
  • Cole PA [2]
  • Chu N [2]
  • Ficarro SB [2]
  • Chen M [2]
  • Shi Y [2]
  • Lovell S [2]
  • Yu Y [2]
  • O'meara TR [2]
  • Palanski BA [2]
  • Lupton CJ [2]
  • Mondal D [2]
  • Xiang Y [2]
  • Kropp A [2]
  • Grinter R [2]
  • Li X [2]
  • Knott GJ [2]
  • Shen Y [2]
  • Spicer BA [2]
  • Fox DR [2]
  • Sali A [2]
  • Liu L [2]
  • Van Eeuwen T [2]
  • Marto JA [2]
  • Li S [2]
  • Hennink M [2]
  • Xibinaku K [2]
  • Li T [2]
  • Congreve S [2]
  • Kondo KT [2]
  • Matas K [2]
  • Ingham DJ [2]
  • Miller BD [2]
  • Freund D [2]
  • Samuels I [2]
  • Lee MJ [2]
  • Holbaur ELF [1]

Journal

  • TO BE PUBLISHED [39]
  • NAT COMMUN [15]
  • SCIENCE [7]
  • NAT STRUCT MOL BIOL [6]
  • ACTA CRYSTALLOGR D STRUCT BIOL [4]
  • COMMUN BIOL [4]
  • MICROSC MICROANAL [4]
  • NATURE [4]
  • BIORXIV [3]
  • MBIO [1]
  • NAT METHODS [1]

Software

  • CRYOSPARC [25]
  • MATLAB [4]
  • PRIISM/IVE [4]
  • CTFFIND [2]
  • RELION [1]

Microscope

  • FEI TALOS ARCTICA [28]
  • TFS KRIOS [23]
  • FEI TITAN KRIOS [17]
  • FEI TECNAI F20 [4]
  • TFS TITAN THEMIS [3]
  • FEI TECNAI F30 [2]
  • TFS GLACIOS [2]
  • FEI POLARA 300 [1]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [81]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [36]
  • GATAN K3 6K X 4K [26]
  • GATAN K2 SUMMIT 4K X 4K [7]
  • DECTRIS ARINA 0.2K X 0.2K [4]
  • FEI FALCON IV 4K X 4K [3]
  • OTHER [3]
  • FEI FALCON I 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [3]

EMPIAR Image category

  • DIFFRACTION IMAGES [3]

External links

  • PDB [80]
  • UniProt [55]
  • AlphaFold DB [47]
  • ChEBI [42]
  • DrugBank [40]
  • PDBe-Kb [38]
  • Gene Ontology [37]
  • Pfam [28]
  • InterPro [25]
  • ChEMBL [19]
  • EMPIAR [17]
  • Complex Portal [8]
  • EMDB [3]