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EMDB ID
Title
Author
ORCID
EM method
Current status
Deposition date
Release date
Deposition site
Last processing site
Fitted models
Raw data
Resolution
Resolution method
Software
Composite map
Ligand name
Complex name
Domain name
Drug name
GO term name
InterPro term name
ChEBI term name
External reference
Publication title
Publication year
Journal
Publication author
Sample type
Sample name
Organism
Organism (NCBI code)
Strain
Organ
Tissue
Cell
Organelle
Cellular Location
E.C. number
Molecular Weight method
Molecular Weight (Da)
Recombinant Expression
Recombinant organism
Recombinant organism (NCBI code)
Recombinant strain
Recombinant expression cell
Recombinant expression plasmid
DNA/RNA classification
DNA/RNA structure
Estimated volume from the map
Calculated resolution using FSC 0.143
Calculated resolution using FSC 0.5
Calculated resolution using FSC half-bit
Author-provided resolution using FSC 0.143
Author-provided resolution using FSC 0.5
Author-provided resolution using FSC half-bit
Map-model resolution using FSC 0.5
Overall atom inclusion
Average Q-Score
Species
Genus
Family
Order
Class
Phylum
Kingdom
Super Kingdom
Serotype
Serocomplex
Category
Isolate
Enveloped
Empty
Natural host organism
Natural host organism (NCBI code)
Host recombinant organism
Host recombinant organism (NCBI code)
Host recombinant strain
Host recombinant cell
Host recombinant plasmid
Shell
Shell triangulation
Shell diameter
Structure determination method
Aggregation State
Specimen preparation type
Buffer pH
Buffer formula
Buffer name
Staining type
Staining material
Grid model
Grid material
Grid mesh
Support film material
Support film topology
Support film thickness
Pretreatment type
Pretreatment atmosphere
Cryogen
Chamber humidity
Chamber temperature
Vitrification pressure
Vitrification instrument
Vitrification method
Lipid protein ratio
Lipid mixture
Instrument
Atmosphere
Temperature
Fiducial type
Embedding material
Fiducial manufacturer
Fiducial diameter
Freezing instrument
Sectioning type
Sectioning instrument
Sectioning temperature
Final thickness
Focused ion bean
Ion bean Voltage
Ion bean current
Ion bean dose rate
Ion bean duration
Microscope name
Illumination mode
Imaging mode
Electron source
Acceleration voltage
C2 aperture diameter
Nominal CS
Nominal defocus (Min)
Nominal defocus (Max)
Calibrated defocus (Min)
Calibrated defocus (Max)
Nominal magnification
Calibrated magnification
Specimen holder model
Cooling holder cryogen
Minimum temperature
Average temperature
Maximum temperature
Specimen holder
Minimum tilt angle
Maximum tilt angle
Legacy tilt params
Phase plate
Energy filter name
Film or detector model
Film/Detector category
Detector mode
Scanner
Imaging width
Imaging height
Sampling interval
Number of grids images
Number of real images
Number of diffraction images
Imaging exposure time
Electron dose per image
Tilt series minimum angle
Tilt series maximum angle
Crystallography camera length
Crystallography tilt angle
Point group
Algorithm
Reconstruction resolution
Reconstruction resolution method
Number of classes
Helical delta Phi
Helical delta Z
Helical symmetry Z
Number of images used
Number of subtomograms used
Crystal plane group
Crystal space group
Number of selected segments
Number of tomograms
Final 2D classification number of classes
Final 3D classification number of classes
Final 3D classification avg. members per classes
Startup model type
Startup EMDB model
Startup PDB model
Startup insilico model
Number of intensities measured
Number of structure factors
Fourier space coverage
R sym
R merge
Overall phase error
Overall phase residual
Phase error rejection criteria
Map size (kB)
Data type
Col
Row
Sec
Cell alpha
Cell beta
Cell gamma
Fast axis
Medium axis
Slow axis
Minimum
Maximum
Average
Std
Voxel size X
Voxel size Y
Voxel size Z
Initial model
Final model
Modelling refining protocol
Mask file
Space group
Point group
Data type
Dimension Col
Dimension Row
Dimension Sec
Cell alpha
Cell beta
Cell gamma
Fast axis
Medium axis
Slow axis
Minimum
Maximum
Average
Std
Voxel size X
Voxel size Y
Voxel size Z
Additional map file
Space group
Point group
Data type
Dimension Col
Dimension Row
Dimension Sec
Cell alpha
Cell beta
Cell gamma
Fast axis
Medium axis
Slow axis
Minimum
Maximum
Average
Std
Voxel size X
Voxel size Y
Voxel size Z
Half map file
Space group
Point group
Data type
Dimension Col
Dimension Row
Dimension Sec
Cell alpha
Cell beta
Cell gamma
Fast axis
Medium axis
Slow axis
Minimum
Maximum
Average
Std
Voxel size X
Voxel size Y
Voxel size Z
Microscopy
Final reconstruction
CTF correction
Molecular replacement
Symmetry determination
Merging
Segment selection
Initial angle assignment
Final angle assignment
Subtomogram extraction
Final 3D classification
Lattice distortion correction
Modelling
EMPIAR ID
Entry DOI
Organization
Organization type
Dataset (GB)
Experiment type
scale
Entry type
Imageset category
Related EMDBs
Header format
Data format
Number of images
Frames per image
Voxel type
Image width
Pixel width
Image height
Pixel height
Segmentation file
Segmentation format
DOI
Pubmed
ISSN
ASTM
UniprotKb
PDBe-KB
AlphaFold DB
Uniparc
INTERPRO
GO
Complex Portal
Pfam
CATH
SCOP
Refseq
Genbank
CAS
PubChem
DrugBank
CHEBI
CHEMBL
CARDBANK
BioImage Archive
IDR
Deposition: 23/01/2023
,
Yen LY,
Yelshanskaya MV,
Sobolevsky AI
,
Yen LY,
Yelshanskaya MV,
Sobolevsky AI